Differential transcript abundance and genotypic variation of four putative allergen-encoding gene families in melting peach

Tree Genetics and Genomes

Volumn 7, Issue 5, 2011, Pages 903-916

  Yang, Zhaowei ^a   Ma, Yingtao ^a   Chen, Lin ^a   Xie, Rangjin ^a   Zhang, Xianqi ^b   Zhang, Bo ^a   Lu, Meidan ^a   Wu, Shandong ^a   Gilissen, Luud J W J ^c   van Ree, Ronald ^d   Gao, Zhongshan ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b THE SECOND AFFILIATED HOSPITAL OF ZHEJIANG UNIVERSITY SCHOOL OF MEDICINE   (China)

^c WAGENINGEN UNIVERSITY   (Netherlands)

^d ACADEMIC MEDICAL CENTER   (Netherlands)

Author keywords

Gene expression; Genotypic variation; Peach allergen; Real time PCR

Indexed keywords

PRUNUS PERSICA;

EID: 80052722874     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-011-0383-5     Document Type: Article

References (70)

1. Ahrazem O, Jimeno L, Lopez-Torrejon G, Herrero M, Espada JL, Sanchez-Monge R, Duffort O, Barber D, Salcedo G (2007) Assessing allergen levels in peach and nectarine cultivars. Ann Allergy Asthma Immunol 99: 42-47.
2. Asero R, Mistrello G, Amato S, Roncarolo D, Martinelli A, Zaccarini M (2006) Peach fuzz contains large amounts of lipid transfer protein: is this the cause of the high prevalence of sensitization to LTP in Mediterranean countries? Eur Ann Allergy Clin Immunol 38: 118-121.
3. Beuning LL, Bowen JH, Persson HA, Barraclough D, Bulley S, MacRae EA (2004) Characterisation of Mal d 1-related genes in Malus. Plant Mol Biol 55: 369-388.
4. Blanco C, Carrillo T, Castillo R, Quiralte J, Cuevas M (1994) Latex allergy-clinical-features and cross-reactivity with fruits. Ann Allergy 73: 309-314.
5. Bolhaar ST, van de Weg WE, van Ree R, Gonzalez-Mancebo E, Zuidmeer L, Bruijnzeel-Koomen CA, Fernandez-Rivas M, Jansen J, Hoffmann-Sommergruber K, Knulst AC, Gilissen LJ (2005) In vivo assessment with prick-to-prick testing and double-blind, placebo-controlled food challenge of allergenicity of apple cultivars. J Allergy Clin Immunol 116: 1080-1086.
6. Botton A, Begheldo M, Rasori A, Bonghi C, Tonutti P (2002) Differential expression of two lipid transfer protein genes in reproductive organs of peach (Prunus persica L. Batsch). Plant Sci 163: 993-1000.
7. Botton A, Vegro M, De Franceschi F, Ramina A, Gemignani C, Marcer G, Pasini G, Tonutti P (2006) Different expression of Pp-LTP1 and accumulation of Pru p 3 in fruits of two Prunus persica L. Batsch genotypes. Plant Sci 171: 106-113.
8. Botton A, Lezzer P, Dorigoni A, Barcaccia G, Ruperti B, Ramina A (2008) Genetic and environmental factors affecting allergen-related gene expression in apple fruit (Malus domestica L. Borkh). J Agric Food Chem 56: 6707-6716.
9. Botton A, Andreotti C, Costa G, Ramina A (2009) Peach (Prunus persica L. Batsch) allergen-encoding genes are developmentally regulated and affected by fruit load and light radiation. J Agric Food Chem 57: 724-734.
10. Brenna OV, Pastorello EA, Farioli L, Pravettoni V, Pompei C (2004) Presence of allergenic proteins in different peach (Prunus persica) cultivars and dependence of their content on fruit ripening. J Agric Food Chem 52: 7997-8000.
11. Cavatorta V, Sforza S, Mastrobuoni G, Pieraccini G, Francese S, Moneti G, Dossena A, Pastorello EA, Marchelli R (2009) Unambiguous characterization and tissue localization of Pru P 3 peach allergen by electrospray mass spectrometry and MALDI imaging. J Mass Spectrom 44: 891-897.
12. Chan ZL, Qin GZ, Xu XB, Li BQ, Tian SP (2007) Proteome approach to characterize proteins induced by antagonist yeast and salicylic acid in peach fruit. J Proteome Res 6: 1677-1688.
13. Chang S, Puryear J, Cairney J (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep 11: 113-116.
14. Chang WC, Lee TY, Huang HD, Huang HY, Pan RL (2008) PlantPAN: plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups. BMC Genomics 9: 561.
15. Chen L, Zhang S, Illa E, Song L, Wu S, Howad W, Arus P, van de Weg E, Chen K, Gao Z (2008) Genomic characterization of putative allergen genes in peach/almond and their synteny with apple. BMC Genomics 9: 543.
16. Cuesta-Herranz J, Lazaro M, de las Heras M, Lluch M, Figueredo E, Umpierrez A, Hernandez J, Cuesta C (1998) Peach allergy pattern: experience in 70 patients. Allergy 53: 78-82.
17. Egger M, Mutschlechner S, Wopfner N, Gadermaier G, Briza P, Ferreira F (2006) Pollen-food syndromes associated with weed pollinosis: an update from the molecular point of view. Allergy 61: 461-476.
18. Fernandez-Rivas M, van Ree R, Cuevas M (1997) Allergy to Rosaceae fruits without related pollinosis. J Allergy Clin Immunol 100: 728-733.
19. Fernandez-Rivas M, Benito C, Gonzalez-Mancebo E, de Durana M (2008) Allergies to fruits and vegetables. Pediatr Allergy Immunol 19: 675-681.
20. Fonseca S, L Hackler Jr, Zvara A, Ferreira S, Baldé A, Dudits D, Pais MS, Puskás LG (2004) Monitoring gene expression along pear fruit development, ripening and senescence using cDNA microarrays. Plant Sci 167: 457-469.
21. Gaier S, Marsh J, Oberhuber C, Rigby NM, Lovegrove A, Alessandri S, Briza P, Radauer C, Zuidmeer L, van Ree R, Hemmer W, Sancho AI, Mills C, Hoffmann-Sommergruber K, Shewry PR (2008) Purification and structural stability of the peach allergens Pru p 1 and Pru p 3. Mol Nutr Food Res 52: S220-S229.
22. Gamboa PM, Caceres O, Antepara I, Sanchez-Monge R, Ahrazem O, Salcedo G, Barber D, Lombardero M, Sanz ML (2007) Two different profiles of peach allergy in the north of Spain. Allergy 62: 408-414.
23. Gao ZS, van de Weg WE, Schaart JG, van Arkel G, Breiteneder H, Hoffmann-Sommergruber K, Gilissen L (2005) Genomic characterization and linkage mapping of the apple allergen genes Mal d 2 (thaumatin-like protein) and Mal d 4 (profilin). Theor Appl Genet 111: 1087-1097.
24. Gao ZS, van de Weg EW, Matos CI, Arens P, Bolhaar S, Knulst AC, Li YH, Hoffmann-Sommergruber K, Gilissen L (2008) Assessment of allelic diversity in intron-containing Mal d 1 genes and their association to apple allergenicity. BMC Plant Biol 8: 116.
25. GarcÌa BE, Lombardero M, EchechipÌa S, Olaguibel JM, DÌaz-Perales A, Sánchez-Monge R, Barber D, Salcedo G, Tabar AI (2004) Respiratory allergy to peach leaves and lipid-transfer proteins. Clin Exp Allergy 34: 291-295.
26. Garcia-Casado G, Pacios LF, Diaz-Perales A, Sanchez-Monge R, Lombardero M, Garcia-Selles FJ, Polo F, Barber D, Salcedo G (2003) Identification of IgE-binding epitopes of the major peach allergen Pru p 3. J Allergy Clin Immunol 112: 599-605.
27. Gilissen L, Bolhaar S, Knulst AC, Zuidmeer L, van Ree R, Gao ZS, van de Weg WE (2004) Production of hypoallergenic plant foods by selection, breeding and genetic modification. In: Gilissen LJW, Wichers HJ, Savelkoul HFJ, Bogers RJ (eds) Symposium on allergy matters-new approaches to allergy prevention and management. Wageningen University and Research Centre, Netherlands, pp 97-107.
28. Gilissen L, Bolhaar STH, Matos CI, Rouwendal GJA, Boone MJ, Krens FA, Zuidmeer L, van Leeuwen A, Akkerdaas J, Hoffmann-Sommergruber K, Knulst AC, Bosch D, van de Weg WE, van Ree R (2005) Silencing the major apple allergen Mal d 1 by using the RNA interference approach. J Allergy Clin Immunol 115: 364-369.
29. Goulao LF, Oliveira CM (2007) Molecular identification of novel differentially expressed mRNAs up-regulated during ripening of apples. Plant Sci 172: 306-318.
30. Han LF, Qiao HY, Li Y (2008) Etiological survey on occupational pollen allergy in fruit growers. Chin Occup Med 35: 270-270.
31. Helsper J, Gilissen L, van Ree R, America AHP, Cordewener JHG, Bosch D (2002) Quadrupole time-of-flight mass spectrometry: a method to study the actual expression of allergen isoforms identified by PCR cloning. J Allergy Clin Immunol 110: 131-138.
32. Herndl A, Marzban G, Kolarich D, Hahn R, Boscia D, Hemmer W, Maghuly F, Stoyanova E, Katinger H, Laimer M (2007) Mapping of Malus domestica allergens by 2-D electrophoresis and IgE-reactivity. Electrophoresis 28: 437-448.
33. Hoffmann-Sommergruber K, Consortium S (2005) The SAFE project: 'plant food allergies: field to table strategies for reducing their incidence in Europe' an EC-funded study. Allergy 60: 436-442.
34. Inomata N, Morita A, Kirino M, Yamazaki H, Yamaguchi J, Yamane Y, Tatewaki S, Hirokado M, Kondo M, Ikezawa Z (2007) Oral allergy syndrome due to plant-derived foods: a clinical review of 63 patients over a period of 6 years. Arerugi 56: 1276-1284.
35. Jin W, Xu C, Li X, Zhang B, Wang P, Allan AC, Chen K (2009) Expression of ROP/RAC GTPase genes in postharvest loquat fruit in association with senescence and cold regulated lignification. Postharvest Biol Technol 54: 9-14.
36. Kanny G, Moneret-Vautrin DA, Flabbee J, Beaudouin E, Morisset M, Thevenin F (2001) Population study of food allergy in France. J Allergy Clin Immunol 108: 133-140.
37. Krebitz M, Wagner B, Ferreira F, Peterbauer C, Campillo N, Witty M, Kolarich D, Steinkellner H, Scheiner O, Breiteneder H (2003) Plant-based heterologous expression of Mal d 2, a thaumatin-like protein and allergen of apple (Malus domestica), and its characterization as an antifungal protein. J Mol Biol 329: 721-730.
38. Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C (2008) Version VI of the ESTree db: an improved tool for peach transcriptome analysis. BMC Bioinform 9: S9.
39. Li QW, Cai J, Dai LQ (2003) 1 case of anaphylactic shock caused by peach hair. J Diffic and Compl Cas 2: 153-153.
40. Marzban G, Puehringer H, Dey R, Brynda S, Ma Y, Martinelli A, Zaccarini M, van der Weg E, Housley Z, Kolarich D, Altmann F, Laimer M (2005) Localisation and distribution of the major allergens in apple fruits. Plant Sci 169: 387-394.
41. Marzban G, Mansfeld A, Herndl A, Jager S, Stoyanova ME, Hemmer W, Katinger H, Laimer M (2006) Direct evidence for the presence of allergens in Rosaceae fruit tree pollen. Aerobiologia 22: 237-245.
42. Menu-Bouaouiche L, Vriet C, Peumans WJ, Barre A, van Damme EJM, Rouge P (2003) A molecular basis for the endo-beta 1, 3-glucanase activity of the thaumatin-like proteins from edible fruits. Biochimie 85: 123-131.
43. Monaci L, Visconti A (2009) Mass spectrometry-based proteomics methods for analysis of food allergens. Trac Trends Anal Chem 28: 581-591.
44. Napoli A, Aiello D, Di Donna L, Moschidis P, Sindona G (2008) Vegetable proteomics: the detection of ole e 1 isoallergens by peptide matching of MALDI MS/MS spectra of underivatized and dansylated glycopeptides. J Proteome Res 7: 2723-2732.
45. Nilo R, Saffie C, Lilley K, Baeza-Yates R, Cambiazo V, Campos-Vargas R, Gonzalez M, Meisel LA, Retamales J, Silva H, Orellana A (2010) Proteomic analysis of peach fruit mesocarp softening and chilling injury using difference gel electrophoresis (DIGE). BMC Genomics 11: 43.
46. Ortolani C, Ispano M, Pastorello E, Bigi A, Ansaloni R (1988) The oral allergy syndrome. Ann Allergy 61: 47-52.
47. Pacios LF, Tordesillas L, Cuesta-Herranz J, Compes E, Sanchez-Monge R, Palacin A, Salcedo G, Diaz-Perales A (2008) Mimotope mapping as a complementary strategy to define allergen IgE-epitopes: peach Pru p 3 allergen as a model. Mol Immunol 45: 2269-2276.
48. Palacin A, Tordesillas L, Gamboa P, Sanchez-Monge R, Cuesta-Herranz J, Sanz ML, Barber D, Salcedo G, Diaz-Perales A (2010) Characterization of peach thaumatin-like proteins and their identification as major peach allergens. Clin Exp Allergy 40: 1422-1430.
49. Pasquato N, Berni R, Folli C, Folloni S, Cianci M, Pantano S, Helliwell JR, Zanotti G (2006) Crystal structure of peach Pru p 3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens. J Mol Biol 356: 684-694.
50. Pastorello EA, Farioli L, Pravettoni V, Ortolani C, Ispano M, Monza M, Baroglio C, Scibola E, Ansaloni R, Incorvaia C, Conti A (1999) The major allergen of peach (Prunus persica) is a lipid transfer protein. J Allergy Clin Immunol 103: 520-526.
51. Puehringer HM, Zinoecker I, Marzban G, Katinger H, Laimer M (2003) MdAP, a novel protein in apple, is associated with the major allergen Mal d 1. Gene 321: 173-183.
52. Radauer C, Bublin M, Wagner S, Mari A, Breiteneder H (2008) Allergens are distributed into few protein families and possess a restricted number of biochemical functions. J Allergy Clin Immunol 121: 847-852.
53. Reuter A, Fortunato D, Garoffo LP, Napolitano L, Scheurer S, Giuffrida MG, Vieths S, Conti AD (2005) Novel isoforms of Pru av 1 with diverging immunoglobulin E binding properties identified by a synergistic combination of molecular biology and proteomics. Proteomics 5: 282-289.
54. Rodriguez J, Crespo JF, Lopez-Rubio A, De La Cruz-Bertolo J, Ferrando-Vivas P, Vives R, Daroca P (2000) Clinical cross-reactivity among foods of the Rosaceae family. J Allergy Clin Immunol 106: 183-189.
55. Rodriguez-Perez R, Fernandez-Rivas M, Gonzalez-Mancebo E, Sanchez-Monge R, Diaz-Perales A, Salcedo G (2003) Peach profilin: cloning, heterologous expression and cross-reactivity with Bet v 2. Allergy 58: 635-640.
56. Ruperti B, Cattivelli L, Pagni S, Ramina A (2002) Ethylene-responsive genes are differentially regulated during abscission, organ senescence and wounding in peach (Prunus persica). J Exp Bot 53: 429-437.
57. Sanchez-Monge R, Lombardero M, Garcia-Selles FJ, Barber D, Salcedo G (1999) Lipid-transfer proteins are relevant allergens in fruit allergy. J Allergy Clin Immunol 103: 514-519.
58. Sancho AI, Foxall R, Rigby NM, Browne T, Zuidmeer L, van Ree R, Waldron KW, Mills ENC (2006) Maturity and storage influence on the apple (Malus domestica) allergen Mal d 3, a nonspecific lipid transfer protein. J Agric Food Chem 54(14): 5098-5104.
59. Sancho AI, van Ree R, van Leeuwen A, Meulenbroek BJ, van de Weg EW, Gilissen L, Puehringer H, Laimer M, Martinelli A, Zaccharini M, Vazquez-Cortes S, Fernandez-Rivas M, Hoffmann-Sommergruber K, Mills ENC, Zuidmeer L (2008) Measurement of lipid transfer protein in 88 apple cultivars. Int Arch Allergy Immunol 146: 19-26.
60. Schenk MF, Fischer ARH, Frewer LJ, Gilissen L, Jacobsen E, Smulders MJM (2008) The influence of perceived benefits on acceptance of GM applications for allergy prevention. Health Risk Soc 10: 263-282.
61. Schenk MF, Cordewener JHG, America AHP, van't Westende WPC, Smulders MJM, Gilissen L (2009) Characterization of PR-10 genes from eight Betula species and detection of Bet v 1 isoforms in birch pollen. BMC Plant Biol 9: 24.
62. Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative C-T method. Nat Protoc 3: 1101-1108.
63. Smole U, Bublin M, Radauer C, Ebner C, Breiteneder H (2008) Mal d 2, the thaumatin-Like allergen from apple, is highly resistant to gastrointestinal digestion and thermal processing. Int Arch Allergy Immunol 147: 289-298.
64. Tawde P, Venkatesh YP, Wang F, Teuber SS, Sathe SK, Roux KH (2006) Cloning and characterization of profilin (Pru du 4), a cross-reactive almond (Prunus dulcis) allergen. J Allergy Clin Immunol 118: 915-922.
65. Tong Z, Gao Z, Wang F, Zhou J, Zhang Z (2009) Selection of reliable reference genes for gene expression studies in peach using real-time PCR. BMC Mol Biol 10: 71.
66. Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, van de Peer Y, Salamini F, Viola R (2010) The genome of the domesticated apple (Malus domestica Borkh.). Nat Genet 42: 833-839.
67. Wen Z, Ye S (2002) A report of 50 patients with artemisia pollenosis and plant food allergy. Zhonghua Yi Xue Za Zhi 82: 626-629.
68. Zhang B, Chen KS, Bowen J, Allan A, Espley R, Karunairetnam S, Ferguson I (2006) Differential expression within the LOX gene family in ripening kiwifruit. J Exp Bot 57: 3825-3836.
69. Zheng Q, Song J, Doncaster K, Rowland E, Byers DM (2007) Qualitative and quantitative evaluation of protein extraction protocols for apple and strawberry fruit suitable for two-dimensional electrophoresis and mass spectrometry analysis. J Agr Food Chem 55: 1663-1673.
70. Zubini P, Zambelli B, Musiani F, Ciurli S, Bertolini P, Baraldi E (2009) The RNA hydrolysis and the cytokinin binding activities of PR-10 proteins are differently performed by two isoforms of the Pru p 1 peach major allergen and are possibly functionally related. Plant Physiol 150: 1235-1247.