Genomic characterization of putative allergen genes in peach/almond and their synteny with apple

BMC Genomics

Volumn 9, Issue , 2008, Pages

  Chen, Lin ^a   Zhang, Shuiming ^a,d   Illa, Eudald ^b   Song, Lijuan ^a   Wu, Shandong ^a   Howad, Werner ^b   Arús, Pere ^b   Van de Weg, Eric ^c   Chen, Kunsong ^a   Gao, Zhongshan ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b IRTA   (Spain)

^c WAGENINGEN UNIVERSITY   (Netherlands)

^d ANHUI AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ALLERGEN; PLANT ANTIGEN;

ALLERGENICITY; ALMOND; AMINO ACID SEQUENCE; APPLE; ARTICLE; CONTROLLED STUDY; CULTIVAR; EXON; GENE CLUSTER; GENE IDENTIFICATION; GENE MAPPING; GENE SEQUENCE; GENETIC LINKAGE; GENOME ANALYSIS; IMMUNOGENETICS; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PEACH; PLANT GENETICS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SPECIES COMPARISON; SYNTENY; UNINDEXED SEQUENCE; CHROMOSOME WALKING; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; GENOMICS; IMMUNOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; MULTIGENE FAMILY; PHYLOGENY; PLANT GENE; PLANT GENOME; PRUNUS; SINGLE NUCLEOTIDE POLYMORPHISM;

MALUS X DOMESTICA; PRUNUS; PRUNUS DULCIS; PRUNUS PERSICA; ROSACEAE;

AMINO ACID SEQUENCE; ANTIGENS, PLANT; CHROMOSOME WALKING; CLONING, MOLECULAR; GENES, PLANT; GENOME, PLANT; GENOMICS; MALUS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; PRUNUS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SYNTENY;

EID: 58249112871     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-543     Document Type: Article

References (39)

1. Hoffmann-Sommergruber K the SAFE consortium The SAFE project: 'plant food allergies: Field to table strategies for reducing their incidence in Europe' an EC-funded study Allergy 2005, 60(4):436-442. 10.1111/ j.1398-9995.2005.00809.x 15727573
2. Fernandez-Rivas M Bolhaar S Gonzalez-Mancebo E Asero R van Leeuwen A Bohle B Ebner C Rigby N Sancho AI Miles S Zuidmeer L Knulst A Breiteneder H Mills C Hoffmann-Sommergruber K van Ree R Apple allergy across Europe: How allergen sensitization profiles determine the clinical expression of allergies to plant foods Journal of Allergy and Clinical Immunology 2006, 118(2):481-488. 10.1016/j.jaci.2006.05.012
3. Karamloo F Scheurer S Wangorsch A May S Haustein D Vieths S Pyr c 1, the major allergen from pear (Pyrus communis), is a new member of the Bet v 1 allergen family J Chromatogr B Biomed Sci Appl 2001, 756(1-2):281-293. 10.1016/S0378-4347(01)00087-1 11419719
4. Fernandez-Rivas M van Ree R Cuevas M Allergy to Rosaceae fruits without related pollinosis Journal of Allergy and Clinical Immunology 1997, 100(6):728-733. 10.1016/S0091-6749(97)70265-3
5. Pastorello EA Farioli L Pravettoni V Ortolani C Ispano M Monza M Baroglio C Scibola E Ansaloni R Incorvaia C Conti A The major allergen of peach (Prunus persica) is a lipid transfer protein Journal of Allergy and Clinical Immunology 1999, 103(3):520-526. 10.1016/ S0091-6749(99)70480-X
6. Scheurer S Metzner K Haustein D Vieths S Molecular cloning, expression and characterization of Pru a 1, the major cherry allergen Molecular Immunology 1997, 34(8-9):619-629. 10.1016/S0161-5890(97)00072-2 9393965
7. Scheurer S Lauer I Foetisch K Moncin MSM Retzek M Hartz C Enrique E Lidholm J Cistero-Bahima A Vieths S Strong allergenicity of Pru av 3, the lipid transfer protein from cherry, is related to high stability against thermal processing and digestion Journal of Allergy and Clinical Immunology 2004, 114(4):900-907. 10.1016/j.jaci.2004.06.017
8. Pastorello EA Farioli L Pravettoni V Giuffrida MG Ortolani C Fortunato D Trambaioli C Scibola E Calamari AM Robino AM Conti A Characterization of the major allergen of plum as a lipid transfer protein J Chromatogr B Biomed Sci Appl 2001, 756(1-2):95-103. 10.1016/S0378-4347(01)00074-3 11419731
9. Pastorello EA Purello D' Ambrosio F Pravettoni V Farioli L Giuffrida G Monza M Ansaloni R Fortunato D Scibola E Rivolta F Incorvaia C Bengtsson A Conti A Ortolani C Evidence for a lipid transfer protein as the major allergen of apricot Journal of Allergy and Clinical Immunology 2000, 105(2):371-377. 10.1016/S0091-6749(00)90090-3
10. Tawde P Venkatesh YP Wang F Teuber SS Sathe SK Roux KH Cloning and characterization of profilin (Pru du 4), a cross-reactive almond (Prunus dulcis) allergen Journal of Allergy and Clinical Immunology 2006, 118(4):915-922. 10.1016/j.jaci.2006.05.028
11. Brenna OV Pastorello EA Farioli L Pravettoni V Pompei C Presence of allergenic proteins in different peach (Prunus persica) cultivars and dependence of their content on fruit ripening Journal of Agricultural and Food Chemistry 2004, 52(26):7997-8000. 10.1021/jf0491052
12. Kootstra HS Vlleg-Boerstra BJ Dubois AEJ Assessment of the reduced allergenic properties of the Santana apple Ann Allergy Asthma Immunol 2007, 99(6):522-525. 18219833
13. Breiteneder H Ebner C Molecular and biochemical classification of plant-derived food allergens Journal of Allergy and Clinical Immunology 2000, 106(1):27-36. 10.1067/mai.2000.106929
14. Bohle B The impact of pollen-related food allergens on pollen allergy Allergy 2007, 62(1):3-10. 10.1111/j.1398-9995.2006.01258.x 17156335
15. Gamboa PM Caceres O Antepara I Sanchez-Monge R Ahrazem O Salcedo G Barber D Lombardero M Sanz ML Two different profiles of peach allergy in the north of Spain Allergy 2007, 62(4):408-414. 10.1111/ j.1398-9995.2006.01284.x 17362252
16. Wen ZM Ye ST A report of 50 patients with artemisia pollenosis and plant food allergy National Medical Journal of China 2002, 82(9):626-629. (in Chinese with English abstract) 12133486
17. Gao ZS Weg van de WE Schaart JG Schouten HJ Tran DH Kodde LP Meer van der IM Geest van der AHM Kodde J Breiteneder H Hoffmann-Sommergruber H Bosch D Gilissen LJWJ Genomic cloning and linkage mapping of the Mal d 1 (PR-10) gene family in apple (Malus domestica) Theoretical and Applied Genetics 2005, 111(1):171-183. 10.1007/s00122-005-2018-4
18. Gao ZS Weg van de WE Schaart JG van Arkel G Breiteneder H Hoffmann-Sommergruber K Gilissen LJWJ Genomic characterization and linkage mapping of the apple allergen genes Mal d 2 (thaumatin-like protein) and Mal d 4 (profilin) Theoretical and Applied Genetics 2005, 111(6):1087-1097. 10.1007/s00122-005-0034-z
19. Gao ZS Weg van de WE Schaart JG Meer van der IM Kodde L Laimer M Breiteneder H Hoffmann-Sommergruber K Gilissen LJWJ Linkage map positions and allelic diversity of two Mal d 3 (non-specific lipid transfer protein) genes in the cultivated apple (Malus domestica) Theoretical and Applied Genetics 2005, 110(3):479-491. 10.1007/ s00122-004-1856-9
20. Gao ZS Weg Van de WE Matos CI Arens P Bolhaar STHP Knulst AC Li YH Hoffmann-Sommergruber Gilissen LJWJ Assessment of allelic diversity in intron-containing Mal d 1 genes and their association to apple allergenicity BMC Plant Biology 2008, 8:116. 2596139 19014530 10.1186/ 1471-2229-8-116
21. Dirlewanger E Graziano E Joobeur T Garriga-Caldere F Cosson P Howad W Arus P Comparative mapping and marker-assisted selection in Rosaceae fruit crops Proceedings of the National Academy of Sciences of the United States of America 2004, 101(26):9891-9896. 10.1073/ pnas.0307937101 15159547 470769
22. Ahrazem O Jimeno L Lopez-Torrejon G Herrero M Espada JL Sanchez-Monge R Duffort O Barber D Salcedo G Assessing allergen levels in peach and nectarine cultivars Ann Allergy Asthma Immunol 2007, 99(1):42-47. 17650828
23. Botton A Vegro M De Franceschi F Ramina A Gemignani C Marcer G Pasini G Tonutti P Different expression of Pp-LTP1 and accumulation of Pru p 3 in fruits of two Prunus persica L. Batsch genotypes Plant Science 2006, 171(1):106-113. 10.1016/j.plantsci.2006.02.016
24. Ruperti B Cattivelli L Pagni S Ramina A Ethylene-responsive genes are differentially regulated during abscission, organ senescence and wounding in peach (Prunus persica) Journal of Experimental Botany 2002, 53(368):429-437. 10.1093/jexbot/53.368.429 11847241
25. Rodriguez-Perez R Fernandez-Rivas M Gonzalez-Mancebo E Sanchez-Monge R Diaz-Perales A Salcedo G Peach profilin: Cloning, heterologous expression and cross-reactivity with Bet v 2 Allergy 2003, 58(7):653-640. 10.1034/j.1398-9995.2003.00198.x
26. Howad W Yamamoto T Dirlewanger E Testolin R Cosson P Cipriani G Monforte AJ Georgi L Abbott AG Arus P Mapping with a few plants: Using selective mapping for microsatellite saturation of the Prunus reference map Genetics 2005, 171(3):1305-1309. 10.1534/genetics.105.043661 16118196 1456826
27. Shatters RG Boykin LM Lapointe SL Hunter WB Weathersbee AA Phylogenetic and structural relationships of the PR5 gene family reveal an ancient multigene family conserved in plants and select animal taxa Journal of Molecular Evolution 2006, 63(1):12-29. 10.1007/s00239-005-0053-z 16736102
28. Breiteneder H Mills C Structural bioinformatic approaches to understand cross-reactivity Molecular Nutrition & Food Research 2006, 50(7):628-632. 10.1002/mnfr.200500274 16764018
29. Botton A Begheldo M Rasori A Bonghi C Tonutti P Differential expression of two lipid transfer protein genes in reproductive organs of peach (Prunus persica L. Batsch) Plant Science 2002, 163(5):993-1000. 10.1016/ S0168-9452(02)00271-6
30. Pacios LF Tordesillas L Cuesta-Herranz J Compes E Sanchez-Monge R Palacin A Salcedo G Diaz-Perales A Mimotope mapping as a complementary strategy to define allergen IgE-epitopes: Peach Pru p 3 allergen as a model Molecular Immunology 2008, 45(8):2269-2276. 10.1016/ j.molimm.2007.11.022 18242709
31. Botton A Lezzer P Dorigoni A Barcaccia G Ruperti B Ramina A Genetic and environmental factors affecting allergen-related gene expression in apple fruit (Malus domestica L. Borkh) Journal of Agricultural and Food Chemistry 2008, 56(15):6707-6716. 10.1021/jf800813d
32. Maliepaard C Alston FH Van Arkel G Brown LM Chevreau E Dunemann F Evans KM Gardiner S Guilford P Van Heusden AW Janse J Laurens F Lynn JR Manganaris AG Den Nijs APM Periam N Rikkerink E Roche P Ryder C Sansavini S Schmidt H Tartarini S Verhaegh JJ Vrielink-Van Ginkel M King GJ Aligning male and female linkage maps of apple (Malus pumila Mill.) using multi-allelic markers Theoretical and Applied Genetics 1998, 97(1-2):60-73.
33. Celton JM Tustin S Chagné D Gardiner S Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences Tree Genetics and Genomes 2008.
34. Arús P Yamamoto T Dirlewanger E Abbott AG Synteny in the Rosaceae Plant Breeding Reviews Jules Janick 2005, 27:175-211.
35. Phipps JB Robertson KR Rohrer JR Origins and evolution of subfam. Maloideae (Rosaceae) Systematic Botany 1991, 16:303-332. 10.2307/2419283
36. Viruel MA Messeguer R de Vicente MC Garcia-Mas J Puigdomenech P Vargas F Arus P A linkage map with RFLP and isozyme markers for almond Theoretical and Applied Genetics 1995, 91:964-971. 10.1007/BF00223907
37. Vision TJ Brown DG Shmoys DB Durrett RT Tanksley SD Selective mapping: A strategy for optimizing the construction of high-density linkage maps Genetics 2000, 155(1):407-420. 1461083 10790413
38. King TP Hoffman D Lowenstein H Marsh DG Platts TAE Thomas W Allergen nomenclature Journal of Allergy and Clinical Immunology 1995, 96:5-14. 10.1016/S0091-6749(95)70027-7
39. Schenk MF Gilissen L Esselink GD Smulders MJM Seven different genes encode a diverse mixture of isoforms of Bet v I, the major birch pollen allergen BMC Genomics 2006, 7:168. 10.1186/1471-2164-7-168 16820045 1552068