-
1
-
-
69549096251
-
Structures and Mechanisms of Polyketide Synthases
-
Khosla, C. (2009) Structures and Mechanisms of Polyketide Synthases J. Org. Chem. 74, 6416-6420
-
(2009)
J. Org. Chem.
, vol.74
, pp. 6416-6420
-
-
Khosla, C.1
-
2
-
-
38949203821
-
Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection
-
DOI 10.1038/nbt1379, PII NBT1379
-
Nguyen, T., Ishida, K., Jenke-Kodama, H., Dittmann, E., Gurgui, C., Hochmuth, T., Taudien, S., Platzer, M., Hertweck, C., and Piel, J. (2008) Exploiting the Mosaic Structure of Trans-Acyltransferase Polyketide Synthases for Natural Product Discovery and Pathway Dissection Nat. Biotechnol. 26, 225-233 (Pubitemid 351225955)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.2
, pp. 225-233
-
-
Nguyen, T.1
Ishida, K.2
Jenke-Kodama, H.3
Dittmann, E.4
Gurgui, C.5
Hochmuth, T.6
Taudien, S.7
Platzer, M.8
Hertweck, C.9
Piel, J.10
-
3
-
-
0037452928
-
Type I polyketide synthase requiring a discrete acyltransferase for polyketide biosynthesis
-
DOI 10.1073/pnas.0537286100
-
Cheng, Y., Tang, G., and Shen, B. (2003) From the Cover: Type I Polyketide Synthase Requiring a Discrete Acyltransferase for Polyketide Biosynthesis Proc. Natl. Acad. Sci. U.S.A. 100, 3149-3154 (Pubitemid 36356554)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.6
, pp. 3149-3154
-
-
Cheng, Y.-Q.1
Tang, G.-L.2
Shen, B.3
-
4
-
-
4344675456
-
Targeting modular polyketide synthases with iteratively acting acyltransferases from metagenomes of uncultured bacterial consortia
-
DOI 10.1111/j.1462-2920.2004.00531.x
-
Piel, J., Hui, D., Fusetani, N., and Matsunaga, S. (2004) Targeting Modular Polyketide Synthases with Iteratively Acting Acyltransferases from Metagenomes of Uncultured Bacterial Consortia Environ. Microbiol. 6, 921-927 (Pubitemid 39123246)
-
(2004)
Environmental Microbiology
, vol.6
, Issue.9
, pp. 921-927
-
-
Piel, J.1
Hui, D.2
Fusetani, N.3
Matsunaga, S.4
-
5
-
-
1142293995
-
Leinamycin Biosynthesis Revealing Unprecedented Architectural Complexity for a Hybrid Polyketide Synthase and Nonribosomal Peptide Synthetase
-
DOI 10.1016/S1074-5521(03)00286-2
-
Tang, G., Cheng, Y., and Shen, B. (2004) Leinamycin Biosynthesis Revealing Unprecedented Architectural Complexity for a Hybrid Polyketide Synthase and Nonribosomal Peptide Synthetase Chem. Biol. 11, 33-45 (Pubitemid 38203988)
-
(2004)
Chemistry and Biology
, vol.11
, Issue.1
, pp. 33-45
-
-
Tang, G.-L.1
Cheng, Y.-Q.2
Shen, B.3
-
6
-
-
70350353075
-
Iso-Migrastatin, Migrastatin, and Dorrigocin Production in Streptomyces platensis NRRL 18993 is Governed by a Single Biosynthetic Machinery Featuring an Acyltransferase-Less Type i Polyketide Synthase
-
Lim, S., Ju, J., Zazopoulos, E., Jiang, H., Seo, J., Chen, Y., Feng, Z., Rajski, S. R., Farnet, C. M., and Shen, B. (2009) Iso-Migrastatin, Migrastatin, and Dorrigocin Production in Streptomyces platensis NRRL 18993 is Governed by a Single Biosynthetic Machinery Featuring an Acyltransferase-Less Type I Polyketide Synthase J. Biol. Chem. 284, 29746-29756
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 29746-29756
-
-
Lim, S.1
Ju, J.2
Zazopoulos, E.3
Jiang, H.4
Seo, J.5
Chen, Y.6
Feng, Z.7
Rajski, S.R.8
Farnet, C.M.9
Shen, B.10
-
7
-
-
22144451059
-
Production of the tubulin destabilizer disorazol in Sorangium cellulosum: Biosynthetic machinery and regulatory genes
-
DOI 10.1002/cbic.200400459
-
Kopp, M., Irschik, H., Pradella, S., and Rolf Müller, R. (2005) Production of the Tubulin Destabilizer Disorazol in Sorangium cellulosum: Biosynthetic Machinery and Regulatory Genes ChemBioChem 6, 1277-1286 (Pubitemid 40978190)
-
(2005)
ChemBioChem
, vol.6
, Issue.7
, pp. 1277-1286
-
-
Kopp, M.1
Irschik, H.2
Pradella, S.3
Muller, R.4
-
8
-
-
25144520542
-
The biosynthetic genes for disorazoles, potent cytotoxic compounds that disrupt microtubule formation
-
DOI 10.1016/j.gene.2005.06.003, PII S0378111905003355
-
Carvalho, R., Reid, R., Viswanathan, N., Gramajo, H., and Julien, B. (2005) The Biosynthetic Genes for Disorazoles, Potent Cytotoxic Compounds that Disrupt Microtubule Formation Gene 359, 91-98 (Pubitemid 41338714)
-
(2005)
Gene
, vol.359
, Issue.1-2
, pp. 91-98
-
-
Carvalho, R.1
Reid, R.2
Viswanathan, N.3
Gramajo, H.4
Julien, B.5
-
9
-
-
73449134857
-
Protein-Protein Recognition between Acyltransferases and Acyl Carrier Proteins in Multimodular Polyketide Synthases
-
Wong, F. T., Chen, A. Y., Cane, D. E., and Khosla, C. (2010) Protein-Protein Recognition between Acyltransferases and Acyl Carrier Proteins in Multimodular Polyketide Synthases Biochemistry 49, 95-102
-
(2010)
Biochemistry
, vol.49
, pp. 95-102
-
-
Wong, F.T.1
Chen, A.Y.2
Cane, D.E.3
Khosla, C.4
-
10
-
-
0037314870
-
Catalysis, specificity, and ACP docking site of Streptomyces coelicolor malonyl-CoA:ACP Transacylase
-
DOI 10.1016/S0969-2126(03)00004-2, PII S0969212603000042
-
Keatinge-Clay, A., Shelat, A. A., Savage, D. F., Tsai, S. C., Miercke, L. J., OConnell, J., Khosla, C., and Stroud, R. M. (2003) Catalysis, Specificity, and ACP Docking Site of Streptomyces coelicolor Malonyl-CoA:ACP Transacylase Structure 11, 147-154 (Pubitemid 36187417)
-
(2003)
Structure
, vol.11
, Issue.2
, pp. 147-154
-
-
Keatinge-Clay, A.T.1
Shelat, A.A.2
Savage, D.F.3
Tsai, S.-C.4
Miercke, L.J.W.5
O'Connell III, J.D.6
Khosla, C.7
Stroud, R.M.8
-
11
-
-
33744460734
-
Mapping the active site of Escherichia coli malonyl-CoA-acyl carrier protein transacylase (FabD) by protein crystallography
-
DOI 10.1107/S0907444906009474
-
Oefner, C., Schulz, H., DArcy, A., and Dale, G. E. (2006) Mapping the Active Site of Escherichia coli Malonyl-CoA-Acyl Carrier Protein Transacylase (FabD) by Protein Crystallography Acta Crystallogr. 62, 613-618 (Pubitemid 43806639)
-
(2006)
Acta Crystallographica Section D: Biological Crystallography
, vol.62
, Issue.6
, pp. 613-618
-
-
Oefner, C.1
Schulz, H.2
D'Arcy, A.3
Dale, G.E.4
-
12
-
-
33746776204
-
The 2.7-Å crystal structure of a 194-kDa homodimeric fragment of the 6-deoxyerythronolide B synthase
-
DOI 10.1073/pnas.0601924103
-
Tang, Y., Kim, C., Mathews, I. I., Cane, D. E., and Khosla, C. (2006) The 2.7-Å Crystal Structure of a 194-kDa Homodimeric Fragment of the 6-Deoxyerythronolide B Synthase Proc. Natl. Acad. Sci. U.S.A. 103, 11124-11129 (Pubitemid 44159927)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.30
, pp. 11124-11129
-
-
Tang, Y.1
Kim, C.-Y.2
Mathews, I.I.3
Cane, D.E.4
Khosla, C.5
-
13
-
-
34447516335
-
Structural and Mechanistic Analysis of Protein Interactions in Module 3 of the 6-Deoxyerythronolide B Synthase
-
DOI 10.1016/j.chembiol.2007.07.012, PII S1074552107002530
-
Tang, Y., Chen, A., Kim, C., Cane, D., and Khosla, C. (2007) Structural and Mechanistic Analysis of Protein Interactions in Module 3 of the 6-Deoxyerythronolide B Synthase Chem. Biol. 14, 931-943 (Pubitemid 47268782)
-
(2007)
Chemistry and Biology
, vol.14
, Issue.8
, pp. 931-943
-
-
Tang, Y.1
Chen, A.Y.2
Kim, C.-Y.3
Cane, D.E.4
Khosla, C.5
-
14
-
-
0035793858
-
Biosynthesis of complex polyketides in a metabolically engineered strain of E. coli
-
DOI 10.1126/science.1058092
-
Pfeifer, B. A., Admiraal, S. J., Gramajo, H., Cane, D. E., and Khosla, C. (2001) Biosynthesis of Complex Polyketides in a Metabolically Engineered Strain of E. coli Science 291, 1790-1792 (Pubitemid 32198984)
-
(2001)
Science
, vol.291
, Issue.5509
, pp. 1790-1792
-
-
Pfeifer, B.A.1
Admiraal, S.J.2
Gramajo, H.3
Cane, D.E.4
Khosla, C.5
-
16
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
DOI 10.1038/8263
-
Perrakis, A., Morris, R. M., and Lamzin, V. S. (1999) Automated Protein Model Building Combined with Iterative Structure Refinement Nat. Struct. Biol. 6, 458-463 (Pubitemid 29218016)
-
(1999)
Nature Structural Biology
, vol.6
, Issue.5
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
17
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
DOI 10.1107/S0907444996012255
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinement of Macromolecular Structures by the Maximum-Likelihood Method Acta Crystallogr. D53, 240-255 (Pubitemid 27235885)
-
(1997)
Acta Crystallographica Section D: Biological Crystallography
, vol.53
, Issue.3
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
18
-
-
77954065271
-
I-TASSER: A Unified Platform for Automated Protein Structure and Function Prediction
-
Roy, A., Kucukural, A., and Zhang, Y. (2010) I-TASSER: A Unified Platform for Automated Protein Structure and Function Prediction Nat. Protoc. 5, 725-738
-
(2010)
Nat. Protoc.
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
19
-
-
39449115394
-
I-TASSER Server for Protein 3D Structure Prediction
-
Zhang, Y. (2008) I-TASSER Server for Protein 3D Structure Prediction BMC Bioinf. 9, 40
-
(2008)
BMC Bioinf.
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
20
-
-
33646136894
-
Solution Structure of Asl1650, an Acyl Carrier Protein from Anabaena sp. PCC 7120 with a Variant Phosphopantetheinylation-Site Sequence
-
Johnson, M. A., Peti, W., Herrmann, T., Wilson, I. A., and Wuthrich, K. (2006) Solution Structure of Asl1650, an Acyl Carrier Protein from Anabaena sp. PCC 7120 with a Variant Phosphopantetheinylation-Site Sequence Protein Sci. 15, 1030-1041
-
(2006)
Protein Sci.
, vol.15
, pp. 1030-1041
-
-
Johnson, M.A.1
Peti, W.2
Herrmann, T.3
Wilson, I.A.4
Wuthrich, K.5
-
21
-
-
34547933299
-
Solution structure and proposed domain-domain recognition interface of an acyl carrier protein domain from a modular polyketide synthase
-
DOI 10.1110/ps.073011407
-
Alekseyev, V. Y., Liu, C. W., Cane, D. E., Puglisi, J. D., and Khosla, C. (2007) Solution Structure and Proposed Domain Domain Recognition Interface of an Acyl Carrier Protein Domain from a Modular Polyketide Synthase Protein Sci. 16, 2093-2107 (Pubitemid 47481645)
-
(2007)
Protein Science
, vol.16
, Issue.10
, pp. 2093-2107
-
-
Alekseyev, V.Y.1
Liu, C.W.2
Cane, D.E.3
Puglisi, J.D.4
Khosla, C.5
-
22
-
-
84956979675
-
Efficient Unbound Docking of Rigid Molecules
-
(Guigo, R. and Gusfield, D., Eds.), Springer-Verlag, Rome
-
Duhovny, D., Nussinov, R., and Wolfson, H. (2002) Efficient Unbound Docking of Rigid Molecules. In Proceedings of the 2nd Workshop on Algorithms in Bioinformatics (WABI) Lecture Notes in Computer Science (Guigo, R. and Gusfield, D., Eds.) Vol. 2452, pp 185-200, Springer-Verlag, Rome.
-
(2002)
Proceedings of the 2nd Workshop on Algorithms in Bioinformatics (WABI) Lecture Notes in Computer Science
, vol.2452
, pp. 185-200
-
-
Duhovny, D.1
Nussinov, R.2
Wolfson, H.3
-
23
-
-
21644476468
-
PatchDock and SymmDock: Servers for Rigid and Symmetric Docking
-
Schneidman-Duhovny, D., Inbar, Y., Nussinov, R., and Wolfson, H. J. (2005) PatchDock and SymmDock: Servers for Rigid and Symmetric Docking Nucleic Acids Res. 33, W363-W367
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Schneidman-Duhovny, D.1
Inbar, Y.2
Nussinov, R.3
Wolfson, H.J.4
-
24
-
-
34548317146
-
FireDock: Fast interaction refinement in molecular docking
-
DOI 10.1002/prot.21495
-
Andrusier, N., Nussinov, R., and Wolfson, H. J. (2007) FireDock: Fast Interaction Refinement in Molecular Docking Proteins 69, 139-159 (Pubitemid 47339146)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.69
, Issue.1
, pp. 139-159
-
-
Andrusier, N.1
Nussinov, R.2
Wolfson, H.J.3
-
25
-
-
48449092207
-
FireDock: A Web Server for Fast Interaction Refinement in Molecular Docking
-
Mashiach, E., Schneidman-Duhovny, D., Andrusier, N., Nussinov, R., and Wolfson, H. J. (2008) FireDock: A Web Server for Fast Interaction Refinement in Molecular Docking Nucleic Acids Res. 36, W229-W232
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Mashiach, E.1
Schneidman-Duhovny, D.2
Andrusier, N.3
Nussinov, R.4
Wolfson, H.J.5
-
26
-
-
0344875194
-
Enhancing the Modularity of the Modular Polyketide Synthases: Transacylation in Modular Polyketide Synthases Catalyzed by Malonyl-CoA:ACP Transacylase
-
DOI 10.1021/ja037429l
-
Kumar, P., Koppisch, A. T., Cane, D. E., and Khosla, C. (2003) Enhancing the Modularity of the Modular Polyketide Synthases: Transacylation in Modular Polyketide Synthases Catalyzed by Malonyl-CoA:ACP Transacylase J. Am. Chem. Soc. 125, 14307-14312 (Pubitemid 37452369)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.47
, pp. 14307-14312
-
-
Kumar, P.1
Koppisch, A.T.2
Cane, D.E.3
Khosla, C.4
-
27
-
-
0035900017
-
Malonyl-CoA:ACP transacylase from Streptomyces coelicolor has two alternative catalytically active nucleophiles
-
DOI 10.1021/bi011108+
-
Dreier, J., Li, Q., and Khosla, C. (2001) Malonyl-CoA:ACP Transacylase from Streptomyces coelicolor has Two Alternative Catalytically Active Nucleophiles Biochemistry 40, 12407-12411 (Pubitemid 32959764)
-
(2001)
Biochemistry
, vol.40
, Issue.41
, pp. 12407-12411
-
-
Dreier, J.1
Li, Q.2
Khosla, C.3
-
28
-
-
0025786062
-
Site-directed mutagenesis studies on the recombinant thioesterase domain of chicken fatty acid synthase expressed in Escherichia coli
-
Pazirandeh, M., Chirala, S. S., and Wakil, S. J. (1991) Site-directed mutagenesis studies on the recombinant thioesterase domain of chicken fatty acid synthase expressed in Escherichia coli J. Biol. Chem. 266, 20946-20952 (Pubitemid 21908556)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.31
, pp. 20946-20952
-
-
Pazirandeh, M.1
Chirala, S.S.2
Wakil, S.J.3
-
29
-
-
0024393375
-
Introduction of a cysteine protease active site into trypsin
-
DOI 10.1021/bi00450a004
-
Higaki, J. N., Evnin, L. B., and Craik, C. S. (1989) Introduction of a Cysteine Protease Active Site into Trypsin Biochemistry 28, 9256-9263 (Pubitemid 20000695)
-
(1989)
Biochemistry
, vol.28
, Issue.24
, pp. 9256-9263
-
-
Higaki, J.N.1
Evnin, L.B.2
Craik, C.S.3
-
30
-
-
64749111406
-
Crosslinking Studies of Protein-Protein Interactions in Nonribosomal Peptide Biosynthesis
-
Hur, G. H., Meier, J. L., Baskin, J., Codelli, J. A., Bertozzi, C. R., Marahiel, M. A., and Burkart, M. D. (2009) Crosslinking Studies of Protein-Protein Interactions in Nonribosomal Peptide Biosynthesis Chem. Biol. 16, 372-381
-
(2009)
Chem. Biol.
, vol.16
, pp. 372-381
-
-
Hur, G.H.1
Meier, J.L.2
Baskin, J.3
Codelli, J.A.4
Bertozzi, C.R.5
Marahiel, M.A.6
Burkart, M.D.7
-
31
-
-
43549100873
-
Mechanism based protein crosslinking of domains from the 6-deoxyerythronolide B synthase
-
DOI 10.1016/j.bmcl.2008.01.073, PII S0960894X0800070X
-
Kapur, S., Worthington, A., Tang, Y., Cane, D. E., Burkart, M. D., and Khosla, C. (2008) Mechanism Based Protein Crosslinking of Domains from the 6-Deoxyerythronolide B Synthase Bioorg. Med. Chem. Lett. 18, 3034-3038 (Pubitemid 351680394)
-
(2008)
Bioorganic and Medicinal Chemistry Letters
, vol.18
, Issue.10
, pp. 3034-3038
-
-
Kapur, S.1
Worthington, A.2
Tang, Y.3
Cane, D.E.4
Burkart, M.D.5
Khosla, C.6
-
32
-
-
0030915704
-
Improved R-factors for diffraction data analysis in macromolecular crystallography
-
DOI 10.1038/nsb0497-269
-
Diederichs, K. and Karplus, P. A. (1997) Improved R-Factors for Diffraction Data Analysis in Macromolecular Crystallography Nat. Struct. Mol. Biol. 4, 269-275 (Pubitemid 27157198)
-
(1997)
Nature Structural Biology
, vol.4
, Issue.4
, pp. 269-275
-
-
Diederichs, K.1
Karplus, P.A.2
-
33
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., and Higgins, D. G. (2007) Clustal W and Clustal X Version 2.0 Bioinformatics 23, 2947-2948 (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
34
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
DOI 10.1093/bioinformatics/15.4.305
-
Gouet, P., Courcelle, E., Stuart, D. I., and Metoz, F. (1999) ESPript: Multiple Sequence Alignments in PostScript Bioinformatics 15, 305-308 (Pubitemid 29213756)
-
(1999)
Bioinformatics
, vol.15
, Issue.4
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
35
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
DOI 10.1073/pnas.181342398
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J., and McCammon, J. A. (2001) Electrostatics of Nanosystems: Application to Microtubules and the Ribosome Proc. Natl. Acad. Sci. U.S.A. 98, 10037-10041 (Pubitemid 32802969)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
|