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Volumn 51, Issue 5, 2011, Pages 1074-1082

Inhibitor and substrate binding by angiotensin-converting enzyme: Quantum mechanical/molecular mechanical molecular dynamics studies

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; ENZYMES; MOLECULAR MODELING; QUANTUM THEORY; X RAYS;

EID: 79960262561     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci200083f     Document Type: Article
Times cited : (58)

References (66)
  • 1
    • 0038163054 scopus 로고
    • The preparation and function of the hypertension-converting enzyme
    • Skeggs, L. T. J.; Kahn, J. R.; Shuway, N. P. The preparation and function of the hypertension-converting enzyme. J. Exp. Med. 1956, 103, 295-299.
    • (1956) J. Exp. Med. , vol.103 , pp. 295-299
    • Skeggs, L.T.J.1    Kahn, J.R.2    Shuway, N.P.3
  • 2
    • 0032515917 scopus 로고    scopus 로고
    • Angiotensin-converting enzyme inhibitors
    • Brown, N. J.; Vaughan, D. E. Angiotensin-converting enzyme inhibitors. Circulation 1998, 97 1411-1420. (Pubitemid 28182680)
    • (1998) Circulation , vol.97 , Issue.14 , pp. 1411-1420
    • Brown, N.J.1    Vaughan, D.E.2
  • 3
    • 0036690114 scopus 로고    scopus 로고
    • Drugs targeting the renin-angiotensin-aldosterone system
    • DOI 10.1038/nrd873
    • Zaman, M. A.; Oparil, S.; Calhoun, D. A. Drugs targeting the renin-angiotensin-aldosterone system. Nat. Rev. Drug Discovery 2002, 1 621-636. (Pubitemid 37368827)
    • (2002) Nature Reviews Drug Discovery , vol.1 , Issue.8 , pp. 621-636
    • Zaman, M.A.1    Oparil, S.2    Calhoun, D.A.3
  • 4
    • 0017578611 scopus 로고
    • Design of specific inhibitors of angiotensin converting enzyme: New class of orally active antihypertensive agents
    • Ondetti, M. A.; Rubin, B.; Cushman, D. W. Design of specific inhibitors of angiotensin-converting enzyme: new class of orally antihypertensive agents. Science 1977, 196 441-444. (Pubitemid 8073845)
    • (1977) Science , vol.196 , Issue.4288 , pp. 441-444
    • Ondetti, M.A.1    Rubin, B.2    Cushman, D.W.3
  • 5
    • 0019274399 scopus 로고
    • A new class of angiotensin converting enzyme inhibitors
    • DOI 10.1038/288280a0
    • Patchett, A.; Harris, E.; Tristram, E.; Wyvratt, M.; Wu, M.; Taub, D.; Peterson, E.; Ikeler, T.; Ten Broeke, J.; Payne, L.; Ondeyka, D.; Thorsett, E.; Greenlee, W.; Lohr, N.; Hoffsommer, R.; Joshua, H.; Ruyle, W.; Rothrock, J.; Aster, S.; Maycock, A.; Robinson, F.; Hirschmann, R.; Sweet, C.; Ulm, E.; Gross, D.; Vassil, T.; Stone, C. A new class of angiotensin-converting enzyme inhibitors. Nature 1980, 288, 280-283. (Pubitemid 11165879)
    • (1980) Nature , vol.288 , Issue.5788 , pp. 280-283
    • Patchett, A.A.1    Harris, E.2    Tristram, E.W.3
  • 6
    • 0346195665 scopus 로고    scopus 로고
    • Crystal structure of the human angiotensin-converting enzyme-lisinopril complex
    • DOI 10.1038/nature01370
    • Natesh, R.; Schwager, S. L. U.; Sturrock, E. D.; Acharya, K. R. Crystal structure of the human angiotensin-converting enzyme-lisinopril complex. Nature 2003, 421, 551-554. (Pubitemid 36168450)
    • (2003) Nature , vol.421 , Issue.6922 , pp. 551-554
    • Natesh, R.1    Schwager, S.L.U.2    Sturrock, E.D.3    Acharya, K.R.4
  • 9
    • 0035042245 scopus 로고    scopus 로고
    • RXP 407, a selective inhibitor of the N-domain of angiotensin I-converting enzyme, blocks in vivo the degradation of hemoregulatory peptide acetyl-Ser-Asp-Lys-Pro with no effect on angiotensin I hydrolysis
    • Junot, C.; Gonzales, M. F.; Ezan, E.; Cotton, J.; Vazeux, G.; Michaud, A.; Azizi, M.; Vassiliou, S.; Yiotakis, A.; Corvol, P.; Dive, V. RXP 407, a selective inhibitor of the N-domain of angiotensin I-converting enzyme, blocks in vivo the degradation of hemoregulatory peptide acetyl-Ser-Asp-Lys-Pro with no effect on angiotensin I hydrolysis. J. Pharmacol. Exp. Ther. 2001, 297 (2), 606-611. (Pubitemid 32377991)
    • (2001) Journal of Pharmacology and Experimental Therapeutics , vol.297 , Issue.2 , pp. 606-611
    • Junot, C.1    Gonzales, M.-F.2    Ezan, E.3    Cotton, J.4    Vazeux, G.5    Michaud, A.6    Azizi, M.7    Vassiliou, S.8    Yiotakis, A.9    Corvol, P.10    Dive, V.11
  • 10
    • 0042908657 scopus 로고
    • Molecular cloning of human testicular angiotensin-converting enzyme: The testis isozyme is identical to the C-terminal half of endothelial angiotensin-converting enzyme
    • Ehlers, M. R. W.; Fox, E. A.; Strydom, D. J.; Riordan, J. F. Molecular cloning of human testicular angiotensin-converting enzyme: the testis isozyme is identical to the C-terminal half of endothelial angiotensin-converting enzyme. Proc. Natl. Acad. Sci. U.S.A. 1989, 86 7741-7745. (Pubitemid 19265263)
    • (1989) Proceedings of the National Academy of Sciences of the United States of America , vol.86 , Issue.20 , pp. 7741-7745
    • Ehlers, M.R.W.1    Fox, E.A.2    Strydom, D.J.3    Riordan, J.F.4
  • 11
    • 3042732126 scopus 로고    scopus 로고
    • Structural details on the binding of antihypertensive drugs captopril and enalaprilat to human testicular angiotensin I-converting enzyme
    • DOI 10.1021/bi049480n
    • Natesh, R.; Schwager, S. L. U.; Evans, H. R.; Sturrock, E. D.; Acharya, K. R. Structural Details on the Binding of Antihypertensive Drugs Captopril and Enalaprilat to Human Testicular Angiotensin I-Converting Enzyme. Biochemistry 2004, 43, 8718-8724. (Pubitemid 38880042)
    • (2004) Biochemistry , vol.43 , Issue.27 , pp. 8718-8724
    • Natesh, R.1    Schwager, S.L.U.2    Evans, H.R.3    Sturrock, E.D.4    Acharya, K.R.5
  • 12
    • 33750291932 scopus 로고    scopus 로고
    • Structure of testis ACE glycosylation mutants and evidence for conserved domain movement
    • DOI 10.1021/bi061146z
    • Watermeyer, J. M.; Sewell, B. T.; Schwager, S. L.; Natesh, R.; Corradi, H. R.; Acharya, K. R.; Sturrock, E. D. Structure of Testis ACE Glycosylation Mutants and Evidence for Conserved Domain Movement. Biochemistry 2006, 45, 12654-12663. (Pubitemid 44630850)
    • (2006) Biochemistry , vol.45 , Issue.42 , pp. 12654-12663
    • Watermeyer, J.M.1    Sewell, B.T.2    Schwager, S.L.3    Natesh, R.4    Corradi, H.R.5    Acharya, K.R.6    Sturrock, E.D.7
  • 13
    • 33644945546 scopus 로고    scopus 로고
    • Crystal structure of the N domain of human somatic angiotensin I-converting enzyme provides a structural basis for domain-specific inhibitor design
    • Corradi, H. R.; Schwager, S. L. U.; Nchinda, A. T.; Sturrock, E. D.; Acharya, K. R. Crystal structure of the N domain of human somatic angiotensin I-converting enzyme provides a structural basis for domain-specific inhibitor design. J. Mol. Biol. 2006, 357, 964-974.
    • (2006) J. Mol. Biol. , vol.357 , pp. 964-974
    • Corradi, H.R.1    Schwager, S.L.U.2    Nchinda, A.T.3    Sturrock, E.D.4    Acharya, K.R.5
  • 14
    • 34248221658 scopus 로고    scopus 로고
    • The structure of testis angiotensin-converting enzyme in complex with the C domain-specific inhibitor RXPA380
    • DOI 10.1021/bi700275e
    • Corradi, H. R.; Chitapi, I.; Sewell, T.; Georgiadis, D.; Dive, V.; Sturrock, E. D.; Acharya, K. R. The Structure of Testis Angiotensin-Converting Enzyme in Complex with the C Domain-Specific Inhibitor RXPA380. Biochemistry 2007, 46, 5473-5478. (Pubitemid 46717270)
    • (2007) Biochemistry , vol.46 , Issue.18 , pp. 5473-5478
    • Corradi, H.R.1    Chitapi, I.2    Sewell, B.T.3    Georgiadis, D.4    Dive, V.5    Sturrock, E.D.6    Acharya, K.R.7
  • 15
    • 44449140132 scopus 로고    scopus 로고
    • Probing the basis of domain-dependent inhibition using novel ketone inhibitors of angiotensin-converting enzyme
    • DOI 10.1021/bi8002605
    • Watermeyer, J. M.; Kroger, W. L.; O'Neil, H. G.; Sewell, B. T.; Sturrock, E. D. Probing the Basis of Domain-Dependent Inhibition Using Novel ketone Inhibitors of Angiotensin-Converting Enzyme. Biochemistry 2008, 47, 5942-5950. (Pubitemid 351770024)
    • (2008) Biochemistry , vol.47 , Issue.22 , pp. 5942-5950
    • Watermeyer, J.M.1    Kroger, W.L.2    O'Neill, H.G.3    Sewell, B.T.4    Sturrock, E.D.5
  • 16
    • 77954386602 scopus 로고    scopus 로고
    • High-resolution crystal structures of drosophila melanogaster angiotensin-converting enzyme in complex with novel inhibitors and antihypertensive drugs
    • Akif, M.; Georgiadis, D.; mahajan, A.; Dive, V.; Sturrock, E. D.; Isaac, R. E.; Acharya, K. R. High-Resolution Crystal Structures of Drosophila melanogaster Angiotensin-Converting Enzyme in Complex with Novel Inhibitors and Antihypertensive Drugs. J. Mol. Biol. 2010, 400, 502-517.
    • (2010) J. Mol Biol. , vol.400 , pp. 502-517
    • Akif, M.1    Georgiadis, D.2    Mahajan, A.3    Dive, V.4    Sturrock, E.D.5    Isaac, R.E.6    Acharya, K.R.7
  • 17
    • 0020678693 scopus 로고
    • Activation of angiotensin converting enzyme by monovalent anions
    • DOI 10.1021/bi00270a016
    • Bunning, P.; Riordan, J. F. Activation of angiotensin conveting enzyme by monovalent anions. Biochemistry 1983, 22, 110-116. (Pubitemid 13154153)
    • (1983) Biochemistry , vol.22 , Issue.1 , pp. 110-116
    • Bunning, P.1    Riordan, J.F.2
  • 18
    • 0020593991 scopus 로고
    • Anion activation of angiotensin converting enzyme. Dependence on nature of substrate
    • Shapiro, R.; Holmquist, B.; Riordan, J. F. Anion activation of angiotensin converting enzyme: dependence on nature of substrate. Biochemistry 1983, 22, 3850-3857. (Pubitemid 13035557)
    • (1983) Biochemistry , vol.22 , Issue.16 , pp. 3850-3857
    • Shapiro, R.1    Holmquist, B.2    Riordan, J.F.3
  • 19
    • 0035823581 scopus 로고    scopus 로고
    • Arg(1097) is critical for the chloride dependence of human angiotensin I-converting C-domain catalytic activity
    • Liu, X.; Fernandez, A.; Wouters, M. A.; Heyberger, S.; Husain, A. Arg(1097) is critical for the chloride dependence of human angiotensin I-converting C-domain catalytic activity. J. Biol Chem. 2001, 276, 33518-33525.
    • (2001) J. Biol Chem. , vol.276 , pp. 33518-33525
    • Liu, X.1    Fernandez, A.2    Wouters, M.A.3    Heyberger, S.4    Husain, A.5
  • 22
    • 0021780973 scopus 로고
    • The design and properties of N-carboxyalkyl-depeptide inhibitors of angiotensin-converting enzyme
    • Patchett, A. A.; Cordes, E. H. The design and properties of N-carboxyalkyl-depeptide inhibitors of angiotensin-converting enzyme. Adv. Enzymol. Relat. Areas Mol. Biol. 1985, 57, 1-84.
    • (1985) Adv. Enzymol. Relat. Areas Mol. Biol. , vol.57 , pp. 1-84
    • Patchett, A.A.1    Cordes, E.H.2
  • 23
    • 0017584729 scopus 로고
    • Design of potent competitive inhibitors of angiotensin-converting enzyme. Carboxyalkanoyl and mercaptoalkanoyl amino acids
    • Cushman, D. W.; Cheung, H. S.; Sabo, E. F.; Ondetti, M. A. Design of potent competitive inhibitors of angiotensin-converting enzyme. Carboxyalkanoyl and mercaptoalkanoyl amino acids. Biochemistry 1977, 16 5484-5491. (Pubitemid 8254139)
    • (1977) Biochemistry , vol.16 , Issue.25 , pp. 5484-5491
    • Cushman, D.W.1    Cheung, H.S.2    Sabo, E.F.3    Ondetti, M.A.4
  • 24
    • 0019274218 scopus 로고
    • Synthesis and biological activity of a ketomethylene analogue of a tripeptide inhibitor of angiotensin converting enzyme
    • Almquist, R. G.; Chao, W. R.; Ellis, M. E.; Johnson, H. L. Synthesis and biological activity of a ketomethylene analog of a tripeptide inhibitor of angiotensin converting enzyme. J. Med. Chem. 1980, 23, 1392-1398. (Pubitemid 11164109)
    • (1980) Journal of Medicinal Chemistry , vol.23 , Issue.12 , pp. 1392-1398
    • Almquist, R.G.1    Chao, W.R.2    Ellis, M.E.3    Johnson, H.L.4
  • 26
    • 0042490795 scopus 로고    scopus 로고
    • Roles of the two active sites of somatic angiotensin-converting enzyme in the cleavage of angiotensin I and bradykinin insights from selective inhibitors
    • DOI 10.1161/01.RES.0000081593.33848.FC
    • Georgiadis, D.; Beau, F.; Czarny, B.; Cotton, J.; Yiotakis, A.; Dive, V. Roles of the two active sites of somatic angiotensin-converting enzyme in the cleavage of angiotensin I and bradykinin: insights from selective inhibitors. Circ. Res. 2003, 93 148-154. (Pubitemid 36919702)
    • (2003) Circulation Research , vol.93 , Issue.2 , pp. 148-154
    • Georgiadis, D.1    Beau, F.2    Czarny, B.3    Cotton, J.4    Yiotakis, A.5    Dive, V.6
  • 28
    • 34548746991 scopus 로고    scopus 로고
    • Towards triple vasopeptidase inhibitors for the treatment of cardiovascular diseases
    • DOI 10.1097/FJC.0b013e31813c6ca5, PII 0000534420070900000004
    • Daull, P.; Jeng, A. Y.; Battistini, B. Towards Triple Vasopeptidase Inhibitors for the Treatment of Cariovascular Diseases. J. Cardiovasc. Pharmacol 2007, 50 (3), 247-256. (Pubitemid 47428971)
    • (2007) Journal of Cardiovascular Pharmacology , vol.50 , Issue.3 , pp. 247-256
    • Daull, P.1    Jeng, A.Y.2    Battistini, B.3
  • 30
    • 54049114994 scopus 로고    scopus 로고
    • Thermodynamics of binding of angiotensin-converting enzyme inhibitors to enzyme active site model
    • Sramko, M.; Garaj, V.; Remko, M. Thermodynamics of binding of angiotensin-converting enzyme inhibitors to enzyme active site model. J. Mol. Struct. (Theochem) 2008, 869 19-28.
    • (2008) J. Mol. Struct. (Theochem) , vol.869 , pp. 19-28
    • Sramko, M.1    Garaj, V.2    Remko, M.3
  • 31
    • 63449118442 scopus 로고    scopus 로고
    • Studies on the molecular recognition between bioactive peptides and angiotensin-converting enzyme
    • Pina, A. S.; Roque, A. C. A. Studies on the molecular recognition between bioactive peptides and angiotensin-converting enzyme. J. Mol. Recognit. 2009, 22, 162-168.
    • (2009) J. Mol. Recognit. , vol.22 , pp. 162-168
    • Pina, A.S.1    Roque, A.C.A.2
  • 33
    • 34547635443 scopus 로고    scopus 로고
    • Simulated interactions between angiotensin-converting enzyme and substrate gonadotropin-releasing hormone: Novel insights into domain selectivity
    • DOI 10.1021/bi700253q
    • Papakyriakou, A.; Spyroulias, G. A.; Sturrock, E. D.; Manessi-Zoupa, E.; Cordopatis, P. Simulated Interactions between Angiotensin-Converting Enzyme and Substrate Gonadotropin-Releasing Hormone: Novel Insights into Domain Selectivity. Biochemistry 2007, 46, 8753-8765. (Pubitemid 47204441)
    • (2007) Biochemistry , vol.46 , Issue.30 , pp. 8753-8765
    • Papakyriakou, A.1    Spyroulias, G.A.2    Sturrock, E.D.3    Manessi-Zoupa, E.4    Cordopatis, P.5
  • 34
    • 77950689552 scopus 로고    scopus 로고
    • QM/MM X-ray refinement of zinc metalloenzymes
    • Li, X.; Hayik, S. A.; Merz, K. M., Jr. QM/MM X-ray refinement of zinc metalloenzymes. J. Inorg. Biochem. 2010, 104, 512-522.
    • (2010) J. Inorg. Biochem. , vol.104 , pp. 512-522
    • Li, X.1    Hayik, S.A.2    Merz Jr., K.M.3
  • 35
    • 77950139247 scopus 로고    scopus 로고
    • Flexibility of catalytic zinc coordination in thermolysin and HDAC8: A born-oppenheimer ab initio QM/MM molecular dynamics study
    • in press
    • Wu, R.; Hu, P.; Wang, S.; Cao, Z.; Zhang, Y., Flexibility of catalytic zinc coordination in thermolysin and HDAC8: A Born-Oppenheimer ab initio QM/MM molecular dynamics study. J. Chem. Theory Comput. in press.
    • J. Chem. Theory Comput.
    • Wu, R.1    Hu, P.2    Wang, S.3    Cao, Z.4    Zhang, Y.5
  • 37
    • 0017100947 scopus 로고
    • Theoretical studies of enzymatic reactions: Dielectric, electrostatic and steric stabilization of carbonium ion in the reaction of lysozyme
    • Warshel, A.; Levitt, M. Theoretical studies of enzymatic reactions: Dielectric, electrostatic and steric stabilization of carbonium ion in the reaction of lysozyme. J. Mol. Biol. 1976, 103 227-249.
    • (1976) J. Mol. Biol. , vol.103 , pp. 227-249
    • Warshel, A.1    Levitt, M.2
  • 38
    • 84986513644 scopus 로고
    • A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations
    • Field, M. J.; Bash, P. A.; Karplus, M. A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations. J. Comput. Chem. 1990, 11 700-733.
    • (1990) J. Comput. Chem. , vol.11 , pp. 700-733
    • Field, M.J.1    Bash, P.A.2    Karplus, M.3
  • 39
    • 84962367344 scopus 로고    scopus 로고
    • Methods and applications of combined quantum mechanical and molecular mechanical potentials
    • Gao, J., Methods and applications of combined quantum mechanical and molecular mechanical potentials. In Rev. Comput. Chem. Lipkowitz, K. B.; Boyd, D. B., Eds.; VCH: New York, 1996; Vol. 7, pp 119-185. (Pubitemid 126676953)
    • (1996) Reviews in Computational Chemistry , vol.7 , pp. 119-185
    • Gao, J.1
  • 42
    • 0033633272 scopus 로고    scopus 로고
    • A self-consistent charge density-functional based tight-binding scheme for large biomolecules
    • Elstner, M.; Frauenheim, T.; Kaxiras, E.; Seifert, G.; Suhai, S. A self-consistent charge density-functional based tight-binding scheme for large biomolecules. Phys. Status Solidi 2000, B217 357-376.
    • (2000) Phys. Status Solidi , vol.B217 , pp. 357-376
    • Elstner, M.1    Frauenheim, T.2    Kaxiras, E.3    Seifert, G.4    Suhai, S.5
  • 43
    • 0035138648 scopus 로고    scopus 로고
    • A QM/MM implementation of the self consistent charge density functional tight binding (SCC-DFTB) method
    • Cui, Q.; Elstner, M.; Kaxiras, E.; Frauenheim, T.; Karplus, M. A QM/MM implementation of the self consistent charge density functional tight binding (SCC-DFTB) method. J. Phys. Chem. B 2001, 105, 569-585.
    • (2001) J. Phys. Chem. B , vol.105 , pp. 569-585
    • Cui, Q.1    Elstner, M.2    Kaxiras, E.3    Frauenheim, T.4    Karplus, M.5
  • 45
    • 0141566583 scopus 로고    scopus 로고
    • Modeling zinc in biomolecules with the self consistent charge density functional tight binding (SCC-DFTB) method: Applications to structure and energetic analysis
    • Elstner, M.; Cui, Q.; Munih, P.; Kaxiras, E.; Frauenheim, T.; Karplus, M. Modeling zinc in biomolecules with the self consistent charge density functional tight binding (SCC-DFTB) method: Applications to structure and energetic analysis. J. Comput. Chem. 2003, 24, 565-581.
    • (2003) J. Comput. Chem. , vol.24 , pp. 565-581
    • Elstner, M.1    Cui, Q.2    Munih, P.3    Kaxiras, E.4    Frauenheim, T.5    Karplus, M.6
  • 46
    • 34547480925 scopus 로고    scopus 로고
    • a analysis for the zinc-bound water in human carbonic anhydrase II: Benchmark for "multiscale" QM/MM simulations and mechanistic implications
    • DOI 10.1021/jp070699w
    • Riccardi, D.; Cui, Q. pKa analysis for the zinc-bound water in human carbonic anhydrase II: benchmark for "multi-scale" QM/MM simulations and mechanistic implications. J. Phys. Chem. A 2007, 111 5703-5711. (Pubitemid 47166774)
    • (2007) Journal of Physical Chemistry A , vol.111 , Issue.26 , pp. 5703-5711
    • Riccardi, D.1    Cui, Q.2
  • 47
    • 39749169756 scopus 로고    scopus 로고
    • Proton transfer in carbonic anhydrase is controlled by electrostatics rather than the orientation of the acceptor
    • DOI 10.1021/bi701950j
    • Riccardi, D.; Konig, P.; Guo, H.; Cui, Q. Proton transfer in carbonic anhydrase is controlled by electrostatics rather than the orientation of the acceptor. Biochemistry 2008, 47, 2369-2378. (Pubitemid 351304542)
    • (2008) Biochemistry , vol.47 , Issue.8 , pp. 2369-2378
    • Riccardi, D.1    Konig, P.2    Guo, H.3    Cui, Q.4
  • 48
    • 67650504166 scopus 로고    scopus 로고
    • Quantum mechanical/molecular mechanical and density functional theory studies of a prototypical zinc peptidase (carboxypeptidase A) suggest a general acid-general base mechanism
    • Xu, D.; Guo, H. Quantum mechanical/molecular mechanical and density functional theory studies of a prototypical zinc peptidase (carboxypeptidase A) suggest a general acid-general base mechanism. J. Am. Chem. Soc. 2009, 131 9780-9788.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 9780-9788
    • Xu, D.1    Guo, H.2
  • 49
    • 77954706270 scopus 로고    scopus 로고
    • Catalysis of carboxypeptidase A: Promoted-water versus nucleophilic pathways
    • Wu, S. S.; Zhang, C. C.; Xu, D. G.; Guo, H. Catalysis of Carboxypeptidase A: Promoted-Water versus Nucleophilic Pathways. J. Phys. Chem. B 2010, 114 (28), 9259-9267.
    • (2010) J. Phys. Chem. B , vol.114 , Issue.28 , pp. 9259-9267
    • Wu, S.S.1    Zhang, C.C.2    Xu, D.G.3    Guo, H.4
  • 50
    • 27144445025 scopus 로고    scopus 로고
    • Antibiotic binding to monozinc CphA β-lactamase from Aeromonas hydropila: Quantum mechanical/molecular mechanical and density functional theory studies
    • DOI 10.1021/jm0505112
    • Xu, D.; Zhou, Y.; Xie, D.; Guo, H. Antibiotic binding to monozinc CphA β-lactamase from Aeromonas hydropila: quantum mechanical/molecular mechanical and density functional theory studies. J. Biol. Chem. 2005, 48, 6679-6689. (Pubitemid 41504724)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.21 , pp. 6679-6689
    • Xu, D.1    Zhou, Y.2    Xie, D.3    Guo, H.4
  • 51
    • 33646855255 scopus 로고    scopus 로고
    • Catalytic mechanism of class B2 metallo-β-lactamase
    • Xu, D.; Xie, D.; Guo, H. Catalytic mechanism of class B2 metallo-β-lactamase. J. Biol. Chem. 2006, 281 8740-8747.
    • (2006) J. Biol. Chem. , vol.281 , pp. 8740-8747
    • Xu, D.1    Xie, D.2    Guo, H.3
  • 52
    • 34548564145 scopus 로고    scopus 로고
    • Inhibitor binding by metallo-β-lactamase IMP-1 from Pseudomonas aeruginosa: Quantum mechanical/molecular mechanical simulations
    • DOI 10.1021/jp073864g
    • Wang, C.; Guo, H. Inhibitor binding by metallo-β-lactamase IMP-1 from Pseudomonas aeruginosa: Quantum mechanical/molecular mechanical simulations. J. Phys. Chem. B 2007, 111 9986-9992. (Pubitemid 47387883)
    • (2007) Journal of Physical Chemistry B , vol.111 , Issue.33 , pp. 9986-9992
    • Wang, C.1    Guo, H.2
  • 53
    • 34848849542 scopus 로고    scopus 로고
    • Antibiotic deactivation by dizinc β-lactamase: Mechanistic insights from QM/MM and DFT studies
    • Xu, D.; Guo, H.; Cui, Q. Antibiotic deactivation by dizinc β-lactamase: mechanistic insights from QM/MM and DFT studies. J. Am. Chem. Soc. 2007, 129, 10814.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 10814
    • Xu, D.1    Guo, H.2    Cui, Q.3
  • 54
    • 34547456540 scopus 로고    scopus 로고
    • Antibiotic binding to dizinc β-lactamase L1 from Stenotrophomonas maltophilia: SCC-DFTB/CHARMM and DFT studies
    • DOI 10.1021/jp068746s
    • Xu, D.; Guo, H.; Cui, Q. Antibiotic binding to dizinc β-lactamase L1 from Stenotrophomonas maltophilia: SCC-DFTB/ CHARMM and DFT studies. J. Phys. Chem. A 2007, 111 5630-5636. (Pubitemid 47166766)
    • (2007) Journal of Physical Chemistry A , vol.111 , Issue.26 , pp. 5630-5636
    • Xu, D.1    Guo, H.2    Cui, Q.3
  • 55
    • 78650620354 scopus 로고    scopus 로고
    • QM/MM studies of mono-zinc beta-lactamase CphA suggest that the crystal structure of an enzyme-intermediate complex represents a minor pathway
    • Wu, S.; Xu, D.; Guo, H. QM/MM studies of mono-zinc beta-lactamase CphA suggest that the crystal structure of an enzyme-intermediate complex represents a minor pathway. J. Am. Chem. Soc. 2010, 132, 17986-17988.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 17986-17988
    • Wu, S.1    Xu, D.2    Guo, H.3
  • 56
    • 0024354001 scopus 로고
    • Solvent effects on protein motion and protein effects on solvent motion
    • Brooks, C. L., III; Karplus, M. Solvent effects on protein motion and protein effects on solvent motion. J. Mol. Biol. 1989, 208, 159-181.
    • (1989) J. Mol. Biol. , vol.208 , pp. 159-181
    • Brooks III, C.L.1    Karplus, M.2
  • 57
    • 84986534166 scopus 로고
    • New spherical-cutoff methods for long-range forces in macromolecular simulations
    • Steinbach, P. J.; Brooks, B. R. New spherical-cutoff methods for long-range forces in macromolecular simulations. J. Comput. Chem. 1994, 15, 667.
    • (1994) J. Comput. Chem. , vol.15 , pp. 667
    • Steinbach, P.J.1    Brooks, B.R.2
  • 58
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, J. P.; Ciccotti, G.; Berendsen, H. J. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 1977, 23, 327-341.
    • (1977) J. Comput. Phys. , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.3
  • 60
    • 0021744255 scopus 로고
    • An interactive computer graphics study of thermolysin-catalyzed peptide cleavage and inhibition by N-carboxymethyl dipeptides
    • DOI 10.1021/bi00319a011
    • Hangauer, D. G.; Mozingo, A. F.; Matthews, B. W. An interactive computer graphics study of thermolysin-catalyzed peptide cleavage and inhibition by N-carboxymethyl dipeptides. Biochemistry 1984, 23, 5730-5741. (Pubitemid 15189726)
    • (1984) Biochemistry , vol.23 , Issue.24 , pp. 5730-5741
    • Hangauer, D.G.1    Monzingo, A.F.2    Matthews, B.W.3
  • 61
    • 35948980030 scopus 로고    scopus 로고
    • Peptide hydrolysis in thermolysin: Ab initio QM/MM investigation of the glu143-assisted water addition mechanism
    • Blumberger, J.; Lamoureux, G.; Klein, M. L. Peptide hydrolysis in thermolysin: Ab initio QM/MM investigation of the Glu143-assisted water addition mechanism. J. Chem. Theory Comput. 2007, 3, 1837-1850.
    • (2007) J. Chem. Theory Comput. , vol.3 , pp. 1837-1850
    • Blumberger, J.1    Lamoureux, G.2    Klein, M.L.3
  • 63
    • 33845280830 scopus 로고
    • Structural basis of the action of thermolysin and related zinc peptidases
    • Matthews, B. W. Structural basis of the action of thermolysin and related zinc peptidases. Acc. Chem. Res. 1988, 21, 333-340.
    • (1988) Acc. Chem. Res. , vol.21 , pp. 333-340
    • Matthews, B.W.1
  • 65
    • 7744244599 scopus 로고    scopus 로고
    • Recent advances in zinc enzymology
    • Lipscomb, W. M.; Strater, N. Recent advances in zinc enzymology. Chem. Rev. 1996, 96 2375-2433. (Pubitemid 126641107)
    • (1996) Chemical Reviews , vol.96 , Issue.7 , pp. 2375-2433
    • Lipscomb, W.N.1    Strater, N.2
  • 66
    • 0037434846 scopus 로고    scopus 로고
    • Crystal structure of Drosophila angiotensin I-converting enzyme bound to captopril and lisinopril
    • DOI 10.1016/S0014-5793(03)00128-5
    • Kim, H. M.; Shin, D. R.; Yoo, O. J.; Lee, H.; Lee, J. O. Crystal structure of Drosophila angiotensin I-converting enzyme bound to captopril and lisinopril. FEBS Lett. 2003, 538, 65-70. (Pubitemid 36287426)
    • (2003) FEBS Letters , vol.538 , Issue.1-3 , pp. 65-70
    • Kim, H.M.1    Shin, D.R.2    Yoo, O.J.3    Lee, H.4    Lee, J.-O.5


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