Adulterations in Basmati rice detected quantitatively by combined use of microsatellite and fragrance typing with High Resolution Melting (HRM) analysis

Food Chemistry

Volumn 129, Issue 2, 2011, Pages 652-659

  Ganopoulos, Ioannis ^a,b   Argiriou, Anagnostis ^a   Tsaftaris, Athanasios ^a,b  

^a INFORMATION TECHNOLOGIES INSTITUTE   (Greece)

^b ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

Adulteration; Basmati rice; Fragrance; High Resolution Melting; Microsatellites

Indexed keywords

ADULTERATION; ALTERNATIVE METHODS; BASMATI RICE; COMMERCIAL RICE; COST EFFECTIVE; GENOTYPING; HIGH RESOLUTION; HIGHER RESOLUTION; MICRO SATELLITE; MICROSATELLITE MARKERS; MICROSATELLITES; RICE PRODUCTS;

FOOD PRODUCTS; GENES; MELTING;

DNA SEQUENCES;

FRAGRANCE;

ARTICLE; BASMATI RICE; DNA FINGERPRINTING; FOOD ANALYSIS; FOOD INDUSTRY; GENOTYPE; HIGH RESOLUTION MELTING ANALYSIS; MICROSATELLITE MARKER; QUANTITATIVE ANALYSIS; RICE;

EID: 79959985867     PISSN: 03088146     EISSN: 18737072     Source Type: Journal    
DOI: 10.1016/j.foodchem.2011.04.109     Document Type: Article

References (29)

1. S. Archak, V. Lakshminarayanareddy, and J. Nagaraju High-throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Oryza sativa) Electrophoresis 28 2007 2396 2405 (Pubitemid 47177115)
2. H.F.J. Bligh Detection of adulteration of Basmati rice with non-premium long-grain rice International Journal of Food Science and Technology 35 2000 257 265
3. L.M.T. Bradbury, T.L. Fitzgerald, R.J. Henry, Q.S. Jin, and D.L.E. Waters The gene for fragrance in rice Plant Biotechnology Journal 3 2005 363 370 (Pubitemid 41557519)
4. L.M.T. Bradbury, R.J. Henry, Q.S. Jin, R.F. Reinke, and D.L.E. Waters A perfect marker for fragrance genotyping in rice Molecular Breeding 16 4 2005 279 283 (Pubitemid 41740506)
5. I. Ganopoulos, A. Argiriou, and A. Tsaftaris Microsatellite high resolution melting (SSR-HRM) analysis for authenticity testing of protected designation of origin (PDO) sweet cherry products Food Control 22 2011 532 541
6. K. Hewson, A.H. Noormohammadi, J.M. Devlin, K. Mardani, and J. Ignjatovic Rapid detection and non-subjective characterisation of infectious bronchitis virus isolates using high-resolution melt curve analysis and a mathematical model Archives of Virology 154 2009 649 660
7. L. Jaakola, M. Suokas, and H. Häggman Novel approaches based on DNA barcoding and high-resolution melting of amplicons for authenticity analyses of berry species Food Chemistry 123 2010 494 500
8. M.J. Kovach, M.N. Calingacion, M.A. Fitzgerald, and S.R. McCouch The origin and evolution of fragrance in rice (Oryza sativa L.) Proceedings of the National Academy of Sciences 106 2009 14444 14449
9. J.H. Li, Y.P. Yin, H.P. Zheng, M.Y. Zhong, R.R. Peng, and B. Wang A high-resolution melting analysis for genotyping urogenital Chlamydia trachomatis Diagnostic Microbiology and Infectious Disease 68 2010 366 374
10. S. Lopez TaqMan based real time PCR method for quantitative detection of Basmati rice adulteration with non-basmati rice European Food Research and Technology 227 2008 619 622 (Pubitemid 351653775)
11. M. Lorieux, M. Petrov, N. Huang, E. Guiderdoni, and A. Ghesquiere Aroma in rice. Genetic analysis of a quantitative trait Theoretical and Applied Genetics 93 1996 1145 1151 (Pubitemid 27015508)
12. J.F. Mackay, C.D. Wright, and R.G. Bonfiglioli A new approach to varietal identification in plants by microsatellite high resolution melting analysis: Application to the verification of grapevine and olive cultivars Plant Methods 4 2008 8
13. E. Mader, B. Lukas, and J. Novak A strategy to setup codominant microsatellite analysis for high-resolution-melting-curve-analysis (HRM) BMC Genetics 9 2008 69
14. E. Mader, J. Ruzicka, C. Schmiderer, and J. Novak Quantitative high-resolution melting analysis for detecting adulterations Analytical Biochemistry 409 2010 153 155
15. A. Martino, T. Mancuso, and A.M. Rossi Application of high-resolution melting to large-scale, high-throughput SNP genotyping: A comparison with the TaqMan method Journal of Biomolecular Screening 15 2010 623 629
16. P.T. Monis, S. Giglio, and C.P. Saint Comparison of SYTO9 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis Analytical Biochemistry 340 2005 24 34 (Pubitemid 40404098)
17. C. Montealegre, M.L.M. Alrgre, and C. Garcia-Ruiz Traceability markers to the botanical origin in olive oils Journal of Agricultural and Food Chemistry 58 2010 28 38
18. J. Nagaraju, M. Kathirvel, R.R. Kumar, E.A. Siddiq, and S.E. Hasnain Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers Proceedings of the National Academy of Sciences of the United States of America 99 2002 5836 5841 (Pubitemid 34493226)
19. A. Pasqualone, V. Alba, G. Mangini, A. Blanco, and C. Montemurro Durum wheat cultivar traceability in PDO Altamura bread by analysis of DNA microsatellites European Food Research and Technology 230 2010 723 729
20. G.H. Reed, and C.T. Wittwer Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis Clinical Chemistry 50 2004 1748 1754 (Pubitemid 39298003)
21. T. Robertson, S. Bibby, D. O'Rourke, T. Belfiore, R. Agnew-Crumpton, and A.H. Noormohammadi Identification of chlamydial species in crocodiles and chickens by PCR-HRM curve analysis Veterinary Microbiology 145 2010 373 379
22. K. Sakthivel, N. Shobha Rani, M. Pandey, A. Sivaranjani, C. Neeraja, and S. Balachandran Development of a simple functional marker for fragrance in rice and its validation in Indian Basmati and non-Basmati fragrant rice varieties Molecular Breeding 24 2009 185 190
23. B.C. Sood, and E.A. Siddiq A rapid technique for scent determination in rice Indian Journal of Genetics and Plant Breeding 38 1978 268 271x
24. P.A. Steer, N.C. Kirkpatrick, D. O'Rourke, and A.H. Noormohammadi Classification of fowl adenovirus serotypes by use of high-resolution melting-curve analysis of the hexon gene region Journal of Clinical Microbiology 47 2009 311 321
25. M. Turci, M.L.S. Sardaro, G. Visioli, E. Maestri, M. Marmiroli, and N. Marmiroli Evaluation of DNA extraction procedures for traceability of various tomato products Food Control 21 2010 143 149
26. L.R. Vemireddy, S. Archak, and J. Nagaraju Capillary electrophoresis is essential for Microsatellite marker based detection and quantification of adulteration of Basmati rice (Oryza sativa) Journal of Agricultural and Food Chemistry 55 2007 8112 8117
27. R. Widjaja, J.D. Craske, and M. Wootton Changes in volatile components of paddy, brown and white fragrant rice during storage Journal of the Science of Food and Agriculture 71 1996 218 224 (Pubitemid 126548602)
28. C.T. Wittwer, G.H. Reed, C.N. Gundry, J.G. Vandersteen, and R.J. Pryor High-resolution genotyping by amplicon melting analysis using LCGreen Clinical Chemistry 49 2003 853 860 (Pubitemid 36623462)
29. S.B. Wu, M.G. Wirthensohn, P. Hunt, J.P. Gibson, and M. Sedgley High resolution melting analysis of almond SNPs derived from ESTs Theoretical and Applied Genetics 118 2008 1 14