-
1
-
-
0030028728
-
Principles of protein-protein interactions
-
10.1073/pnas.93.1.13, 40170, 8552589
-
Jones S, Thornton JM. Principles of protein-protein interactions. Proc Natl Acad Sci U S A 1996, 93:13-20. 10.1073/pnas.93.1.13, 40170, 8552589.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 13-20
-
-
Jones, S.1
Thornton, J.M.2
-
2
-
-
43149092276
-
Principles of protein-protein interactions: what are the preferred ways for proteins to interact?
-
10.1021/cr040409x, 18355092
-
Keskin O, Gursoy A, Ma B, Nussinov R. Principles of protein-protein interactions: what are the preferred ways for proteins to interact?. Chem Rev 2008, 108(4):1225-1244. 10.1021/cr040409x, 18355092.
-
(2008)
Chem Rev
, vol.108
, Issue.4
, pp. 1225-1244
-
-
Keskin, O.1
Gursoy, A.2
Ma, B.3
Nussinov, R.4
-
3
-
-
0031450506
-
Hydrogen bonds and salt bridges across protein-protein interfaces
-
10.1093/protein/10.9.999, 9464564
-
Xu D, Tsai CJ, Nussinov R. Hydrogen bonds and salt bridges across protein-protein interfaces. Protein Eng 1997, 10(9):999-1012. 10.1093/protein/10.9.999, 9464564.
-
(1997)
Protein Eng
, vol.10
, Issue.9
, pp. 999-1012
-
-
Xu, D.1
Tsai, C.J.2
Nussinov, R.3
-
4
-
-
0025718955
-
Contributions of engineered surface salt bridges to the stability of T4 lysozyme determined by directed mutagenesis
-
10.1021/bi00243a015, 1854726
-
Sun DP, Sauer U, Nicholson H, Matthews BW. Contributions of engineered surface salt bridges to the stability of T4 lysozyme determined by directed mutagenesis. Biochemistry 1991, 30(29):7142-53. 10.1021/bi00243a015, 1854726.
-
(1991)
Biochemistry
, vol.30
, Issue.29
, pp. 7142-7153
-
-
Sun, D.P.1
Sauer, U.2
Nicholson, H.3
Matthews, B.W.4
-
5
-
-
0037422589
-
Insufficiently dehydrated hydrogen bonds as determinants of protein interactions
-
10.1073/pnas.0136888100, 140898, 12518060
-
Fernàndez A, Scheraga HA. Insufficiently dehydrated hydrogen bonds as determinants of protein interactions. Proc Natl Acad Sci U S A 2003, 100:113-118. 10.1073/pnas.0136888100, 140898, 12518060.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 113-118
-
-
Fernàndez, A.1
Scheraga, H.A.2
-
6
-
-
0026416668
-
Reconciling the magnitude of the microscopic and macroscopic hydrophobic effects
-
10.1126/science.2011744, 2011744
-
Sharp KA, Nicholls A, Fine RF, Honig B. Reconciling the magnitude of the microscopic and macroscopic hydrophobic effects. Science 1991, 252(5002):106-109. 10.1126/science.2011744, 2011744.
-
(1991)
Science
, vol.252
, Issue.5002
, pp. 106-109
-
-
Sharp, K.A.1
Nicholls, A.2
Fine, R.F.3
Honig, B.4
-
7
-
-
0032479179
-
Anatomy of hot spots in protein interfaces
-
10.1006/jmbi.1998.1843, 9653027
-
Bogan AA, Thorn KS. Anatomy of hot spots in protein interfaces. J Mol Biol 1998, 280:1-9. 10.1006/jmbi.1998.1843, 9653027.
-
(1998)
J Mol Biol
, vol.280
, pp. 1-9
-
-
Bogan, A.A.1
Thorn, K.S.2
-
8
-
-
11844249426
-
Hot regions in protein-protein interactions: the organization and contribution of structurally conserved hot spot residues
-
10.1016/j.jmb.2004.10.077, 15644221
-
Keskin O, Ma B, Nussinov R. Hot regions in protein-protein interactions: the organization and contribution of structurally conserved hot spot residues. J Mol Biol 2005, 345(5):1281-1294. 10.1016/j.jmb.2004.10.077, 15644221.
-
(2005)
J Mol Biol
, vol.345
, Issue.5
, pp. 1281-1294
-
-
Keskin, O.1
Ma, B.2
Nussinov, R.3
-
9
-
-
34548779127
-
Hot spots-A review of the protein-protein interface determinant amino-acid residues
-
10.1002/prot.21396, 17546660
-
Moreira ISS, Fernandes PAA, Ramos MJJ. Hot spots-A review of the protein-protein interface determinant amino-acid residues. Proteins 2007, 68(4):803-812. 10.1002/prot.21396, 17546660.
-
(2007)
Proteins
, vol.68
, Issue.4
, pp. 803-812
-
-
Moreira, I.S.S.1
Fernandes, P.A.A.2
Ramos, M.J.J.3
-
10
-
-
0024403619
-
High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis
-
10.1126/science.2471267, 2471267
-
Cunningham B, Wells J. High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 1989, 244(4908):1081-1085. 10.1126/science.2471267, 2471267.
-
(1989)
Science
, vol.244
, Issue.4908
, pp. 1081-1085
-
-
Cunningham, B.1
Wells, J.2
-
11
-
-
0026350498
-
Systematic mutational analyses of protein-protein interfaces
-
Academic Press, Langone JJ
-
Wells JA. Systematic mutational analyses of protein-protein interfaces. Molecular Design and Modeling: Concepts and Applications Part A: Proteins, Peptides, and Enzymes, Volume 202 of Methods in Enzymology 1991, 390-411. Academic Press, Langone JJ.
-
(1991)
Molecular Design and Modeling: Concepts and Applications Part A: Proteins, Peptides, and Enzymes, Volume 202 of Methods in Enzymology
, pp. 390-411
-
-
Wells, J.A.1
-
12
-
-
0028916599
-
A hot spot of binding energy in a hormone-receptor interface
-
10.1126/science.7529940, 7529940
-
Clackson T, Wells JA. A hot spot of binding energy in a hormone-receptor interface. Science 1995, 267(5196):383-386. 10.1126/science.7529940, 7529940.
-
(1995)
Science
, vol.267
, Issue.5196
, pp. 383-386
-
-
Clackson, T.1
Wells, J.A.2
-
13
-
-
38549092067
-
HotSprint: database of computational hot spots in protein interfaces
-
10.1093/nar/gkm813, 2238999, 17959648
-
Guney E, Tuncbag N, Keskin O, Gursoy A. HotSprint: database of computational hot spots in protein interfaces. Nucleic Acids Res 2007, 36(Database):D662-D666. 10.1093/nar/gkm813, 2238999, 17959648.
-
(2007)
Nucleic Acids Res
, vol.36
, Issue.DATABASE
-
-
Guney, E.1
Tuncbag, N.2
Keskin, O.3
Gursoy, A.4
-
14
-
-
34548764386
-
An automated decision-tree approach to predicting protein interaction hot spots
-
10.1002/prot.21474, 17554779
-
Darnell SJ, Page D, Mitchell JC. An automated decision-tree approach to predicting protein interaction hot spots. Proteins 2007, 68(4):813-823. 10.1002/prot.21474, 17554779.
-
(2007)
Proteins
, vol.68
, Issue.4
, pp. 813-823
-
-
Darnell, S.J.1
Page, D.2
Mitchell, J.C.3
-
15
-
-
65849158839
-
A feature-based approach to modeling protein-protein interaction hot spots
-
10.1093/nar/gkp132, 2677884, 19273533
-
Cho KI, Kim D, Lee D. A feature-based approach to modeling protein-protein interaction hot spots. Nucleic Acids Res 2009, 37(8):2672-2687. 10.1093/nar/gkp132, 2677884, 19273533.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.8
, pp. 2672-2687
-
-
Cho, K.I.1
Kim, D.2
Lee, D.3
-
16
-
-
66349094681
-
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy
-
10.1093/bioinformatics/btp240, 19357097
-
Tuncbag N, Gursoy A, Keskin O. Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. Bioinformatics 2009, 25(12):1513-1520. 10.1093/bioinformatics/btp240, 19357097.
-
(2009)
Bioinformatics
, vol.25
, Issue.12
, pp. 1513-1520
-
-
Tuncbag, N.1
Gursoy, A.2
Keskin, O.3
-
17
-
-
77950651626
-
APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility
-
10.1186/1471-2105-11-174, 2874803, 20377884
-
Xia JF, Zhao XM, Song J, Huang DS. APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility. BMC Bioinformatics 2010, 11:174. 10.1186/1471-2105-11-174, 2874803, 20377884.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 174
-
-
Xia, J.F.1
Zhao, X.M.2
Song, J.3
Huang, D.S.4
-
18
-
-
0033568644
-
Computational Alanine Scanning To Probe Protein-Protein Interactions: A Novel Approach To Evaluate Binding Free Energies
-
Massova I, Kollman PA. Computational Alanine Scanning To Probe Protein-Protein Interactions: A Novel Approach To Evaluate Binding Free Energies. J Am Chem Soc 1999, 121(36):8133-8143.
-
(1999)
J Am Chem Soc
, vol.121
, Issue.36
, pp. 8133-8143
-
-
Massova, I.1
Kollman, P.A.2
-
19
-
-
0037195144
-
A simple physical model for binding energy hot spots in protein-protein complexes
-
10.1073/pnas.202485799, 137846, 12381794
-
Kortemme T, Baker D. A simple physical model for binding energy hot spots in protein-protein complexes. Proc Natl Acad Sci U S A 2002, 99(22):14116-14121. 10.1073/pnas.202485799, 137846, 12381794.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.22
, pp. 14116-14121
-
-
Kortemme, T.1
Baker, D.2
-
20
-
-
0036291145
-
Predicting Changes in the Stability of Proteins and Protein Complexes: A Study of More Than 1000 Mutations
-
10.1016/S0022-2836(02)00442-4, 12079393
-
Guerois R, Nielsen JE, Serrano L. Predicting Changes in the Stability of Proteins and Protein Complexes: A Study of More Than 1000 Mutations. J Mol Biol 2002, 320(2):369-387. 10.1016/S0022-2836(02)00442-4, 12079393.
-
(2002)
J Mol Biol
, vol.320
, Issue.2
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
21
-
-
3242879771
-
Computational Alanine Scanning of Protein-Protein Interfaces
-
10.1126/stke.2192004pl2, 14872095
-
Kortemme T, Kim DE, Baker D. Computational Alanine Scanning of Protein-Protein Interfaces. Sci STKE 2004, 2004(219):pl2. 10.1126/stke.2192004pl2, 14872095.
-
(2004)
Sci STKE
, vol.2004
, Issue.219
-
-
Kortemme, T.1
Kim, D.E.2
Baker, D.3
-
22
-
-
14144256681
-
Energy Functions for Protein Design: Adjustment with Protein-Protein Complex Affinities, Models for the Unfolded State, and Negative Design of Solubility and Specificity
-
10.1016/j.jmb.2004.12.019, 15733929
-
Pokala N, Handel TM. Energy Functions for Protein Design: Adjustment with Protein-Protein Complex Affinities, Models for the Unfolded State, and Negative Design of Solubility and Specificity. J Mol Biol 2005, 347:203-227. 10.1016/j.jmb.2004.12.019, 15733929.
-
(2005)
J Mol Biol
, vol.347
, pp. 203-227
-
-
Pokala, N.1
Handel, T.M.2
-
23
-
-
58149247893
-
Predicting free energy changes using structural ensembles
-
10.1038/nmeth0109-3, 19116609
-
Benedix A, Becker CM, de Groot BL, Caflisch A, Bockmann RA. Predicting free energy changes using structural ensembles. Nature Methods 2009, 6:3-4. 10.1038/nmeth0109-3, 19116609.
-
(2009)
Nature Methods
, vol.6
, pp. 3-4
-
-
Benedix, A.1
Becker, C.M.2
de Groot, B.L.3
Caflisch, A.4
Bockmann, R.A.5
-
24
-
-
70749125843
-
Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods
-
10.1186/1471-2105-10-365, 2777894, 19878545
-
Lise S, Archambeau C, Pontil M, Jones D. Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods. BMC Bioinformatics 2009, 10:365. 10.1186/1471-2105-10-365, 2777894, 19878545.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 365
-
-
Lise, S.1
Archambeau, C.2
Pontil, M.3
Jones, D.4
-
25
-
-
77951273638
-
PCRPi: Presaging Critical Residues in Protein interfaces, a new computational tool to chart hot spots in protein interfaces
-
10.1093/nar/gkp1158, 2847225, 20008102
-
Assi SA, Tanaka T, Rabbitts TH, Fernandez-Fuentes N. PCRPi: Presaging Critical Residues in Protein interfaces, a new computational tool to chart hot spots in protein interfaces. Nucleic Acids Res 2010, 38(6). 10.1093/nar/gkp1158, 2847225, 20008102.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.6
-
-
Assi, S.A.1
Tanaka, T.2
Rabbitts, T.H.3
Fernandez-Fuentes, N.4
-
26
-
-
0035066602
-
ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions
-
10.1093/bioinformatics/17.3.284, 11294795
-
Thorn KS, Bogan AA. ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions. Bioinformatics 2001, 17(3):284-285. 10.1093/bioinformatics/17.3.284, 11294795.
-
(2001)
Bioinformatics
, vol.17
, Issue.3
, pp. 284-285
-
-
Thorn, K.S.1
Bogan, A.A.2
-
27
-
-
0027132013
-
Comparison of a Structural and a Functional Epitope
-
10.1006/jmbi.1993.1611, 7504735
-
Cunningham BC, Wells JA. Comparison of a Structural and a Functional Epitope. J Mol Biol 1993, 234(3):554-563. 10.1006/jmbi.1993.1611, 7504735.
-
(1993)
J Mol Biol
, vol.234
, Issue.3
, pp. 554-563
-
-
Cunningham, B.C.1
Wells, J.A.2
-
28
-
-
0031887368
-
Effects of substitutions in the binding surface of an antibody on antigen affinity
-
10.1093/protein/11.1.65, 9579662
-
Dougan D, Malby R, Gruen L, Kortt A, Hudson P. Effects of substitutions in the binding surface of an antibody on antigen affinity. Protein Eng 1998, 11:65-74. 10.1093/protein/11.1.65, 9579662.
-
(1998)
Protein Eng
, vol.11
, pp. 65-74
-
-
Dougan, D.1
Malby, R.2
Gruen, L.3
Kortt, A.4
Hudson, P.5
-
29
-
-
0032540358
-
Structural and Functional Analysis of the 1:1 Growth Hormone:Receptor Complex Reveals the Molecular Basis for Receptor Affinity
-
10.1006/jmbi.1998.1669, 9571026
-
Clackson T, Ultsch MH, Wells JA, de Vos AM. Structural and Functional Analysis of the 1:1 Growth Hormone:Receptor Complex Reveals the Molecular Basis for Receptor Affinity. J Mol Biol 1998, 277(5):1111-1128. 10.1006/jmbi.1998.1669, 9571026.
-
(1998)
J Mol Biol
, vol.277
, Issue.5
, pp. 1111-1128
-
-
Clackson, T.1
Ultsch, M.H.2
Wells, J.A.3
de Vos, A.M.4
-
30
-
-
0037200049
-
The thrombin epitope recognizing thrombomodulin is a highly cooperative hot spot in exosite I
-
10.1074/jbc.M205009200, 12068020
-
Pineda AO, Cantwell AM, Bush LA, Rose T, Di Cera E. The thrombin epitope recognizing thrombomodulin is a highly cooperative hot spot in exosite I. J Biol Chem 2002, 277(35):32015-32019. 10.1074/jbc.M205009200, 12068020.
-
(2002)
J Biol Chem
, vol.277
, Issue.35
, pp. 32015-32019
-
-
Pineda, A.O.1
Cantwell, A.M.2
Bush, L.A.3
Rose, T.4
Di Cera, E.5
-
31
-
-
11844296052
-
The modular architecture of protein-protein binding interfaces
-
10.1073/pnas.0407280102, 544062, 15618400
-
Reichmann D, Rahat O, Albeck S, Meged R, Dym O, Schreiber G. The modular architecture of protein-protein binding interfaces. Proc Natl Acad Sci U S A 2005, 102:57-62. 10.1073/pnas.0407280102, 544062, 15618400.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 57-62
-
-
Reichmann, D.1
Rahat, O.2
Albeck, S.3
Meged, R.4
Dym, O.5
Schreiber, G.6
-
32
-
-
0033954256
-
The Protein Data Bank
-
10.1093/nar/28.1.235, 102472, 10592235
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The Protein Data Bank. Nucleic Acids Res 2000, 28:235-242. 10.1093/nar/28.1.235, 102472, 10592235.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
33
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
10.1093/protein/11.9.739, 9796821
-
Shindyalov IN, Bourne PE. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng 1998, 11(9):739-747. 10.1093/protein/11.9.739, 9796821.
-
(1998)
Protein Eng
, vol.11
, Issue.9
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
34
-
-
78349271620
-
Geometrically centered region: A " wet" model of protein binding hot spots not excluding water molecules
-
10.1002/prot.22838, 20818601
-
Li Z, Li J. Geometrically centered region: A " wet" model of protein binding hot spots not excluding water molecules. Proteins 2010, 78(16):3304-3316. 10.1002/prot.22838, 20818601.
-
(2010)
Proteins
, vol.78
, Issue.16
, pp. 3304-3316
-
-
Li, Z.1
Li, J.2
-
35
-
-
0015222647
-
The interpretation of protein structures: estimation of static accessibility
-
10.1016/0022-2836(71)90324-X, 5551392
-
Lee B, Richards FM. The interpretation of protein structures: estimation of static accessibility. J Mol Biol 1971, 55(3):379-400. 10.1016/0022-2836(71)90324-X, 5551392.
-
(1971)
J Mol Biol
, vol.55
, Issue.3
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
37
-
-
62549102939
-
'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces
-
10.1093/bioinformatics/btp058, 2654803, 19179356
-
Li J, Liu Q. 'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces. Bioinformatics 2009, 25(6):743-750. 10.1093/bioinformatics/btp058, 2654803, 19179356.
-
(2009)
Bioinformatics
, vol.25
, Issue.6
, pp. 743-750
-
-
Li, J.1
Liu, Q.2
-
38
-
-
34147120474
-
A note on two problems in connexion with graphs
-
Dijkstra EW. A note on two problems in connexion with graphs. Numerische Mathematik 1959, 1:269-271.
-
(1959)
Numerische Mathematik
, vol.1
, pp. 269-271
-
-
Dijkstra, E.W.1
-
39
-
-
0033565815
-
Residue depth: a novel parameter for the analysis of protein structure and stability
-
10.1016/S0969-2126(99)80097-5, 10425675
-
Chakravarty S, Varadarajan R. Residue depth: a novel parameter for the analysis of protein structure and stability. Structure 1999, 7(7):723-732. 10.1016/S0969-2126(99)80097-5, 10425675.
-
(1999)
Structure
, vol.7
, Issue.7
, pp. 723-732
-
-
Chakravarty, S.1
Varadarajan, R.2
-
40
-
-
0037316590
-
DPX: for the analysis of the protein core
-
10.1093/bioinformatics/19.2.313, 12538266
-
Pintar A, Carugo O, Pongor S. DPX: for the analysis of the protein core. Bioinformatics 2003, 19(2):313-314. 10.1093/bioinformatics/19.2.313, 12538266.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 313-314
-
-
Pintar, A.1
Carugo, O.2
Pongor, S.3
-
41
-
-
0037382258
-
Atom Depth as a Descriptor of the Protein Interior
-
10.1016/S0006-3495(03)75060-7, 1302821, 12668463
-
Pintar A. Atom Depth as a Descriptor of the Protein Interior. Biophysical Journal 2003, 84(4):2553-2561. 10.1016/S0006-3495(03)75060-7, 1302821, 12668463.
-
(2003)
Biophysical Journal
, vol.84
, Issue.4
, pp. 2553-2561
-
-
Pintar, A.1
-
42
-
-
1542606700
-
Atom depth in protein structure and function
-
10.1016/j.tibs.2003.09.004, 14607089
-
Pintar A, Carugo O, Pongor S. Atom depth in protein structure and function. Trends Biochem Sci 2003, 28(11):593-597. 10.1016/j.tibs.2003.09.004, 14607089.
-
(2003)
Trends Biochem Sci
, vol.28
, Issue.11
, pp. 593-597
-
-
Pintar, A.1
Carugo, O.2
Pongor, S.3
-
43
-
-
14644400399
-
An amino acid has two sides: a new 2D measure provides a different view of solvent exposure
-
10.1002/prot.20379, 15688434
-
Hamelryck T. An amino acid has two sides: a new 2D measure provides a different view of solvent exposure. Proteins 2005, 59:38-48. 10.1002/prot.20379, 15688434.
-
(2005)
Proteins
, vol.59
, pp. 38-48
-
-
Hamelryck, T.1
-
44
-
-
70349392341
-
Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only
-
10.1371/journal.pone.0007072, 2742725, 19759917
-
Song J, Tan H, Mahmood K, Law RHP, Buckle AM, Webb GI, Akutsu T, Whisstock JC. Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only. PLoS ONE 2009, 4(9):e7072. 10.1371/journal.pone.0007072, 2742725, 19759917.
-
(2009)
PLoS ONE
, vol.4
, Issue.9
-
-
Song, J.1
Tan, H.2
Mahmood, K.3
Law, R.H.P.4
Buckle, A.M.5
Webb, G.I.6
Akutsu, T.7
Whisstock, J.C.8
-
45
-
-
37849034569
-
Quantifying the relationship of protein burying depth and sequence
-
Yuan Z, Wang ZX. Quantifying the relationship of protein burying depth and sequence. Proteins: Structure Function, and Bioinformatics 2008, 70(2):509-516.
-
(2008)
Proteins: Structure Function, and Bioinformatics
, vol.70
, Issue.2
, pp. 509-516
-
-
Yuan, Z.1
Wang, Z.X.2
-
46
-
-
54049091165
-
Sequence based residue depth prediction using evolutionary information and predicted secondary structure
-
10.1186/1471-2105-9-388, 2567998, 18803867
-
Zhang H, Zhang T, Chen K, Shen S, Ruan J, Kurgan L. Sequence based residue depth prediction using evolutionary information and predicted secondary structure. BMC Bioinformatics 2008, 9:388. 10.1186/1471-2105-9-388, 2567998, 18803867.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 388
-
-
Zhang, H.1
Zhang, T.2
Chen, K.3
Shen, S.4
Ruan, J.5
Kurgan, L.6
-
47
-
-
67649405075
-
Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility
-
10.1074/jbc.R800080200, 2679426, 19164280
-
Pace CN, Grimsley GR, Scholtz JM. Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility. J Biol Chem 2009, 284(20):13285-13289. 10.1074/jbc.R800080200, 2679426, 19164280.
-
(2009)
J Biol Chem
, vol.284
, Issue.20
, pp. 13285-13289
-
-
Pace, C.N.1
Grimsley, G.R.2
Scholtz, J.M.3
-
48
-
-
0003710380
-
LIBSVM: a library for support vector machines 2001
-
Chang CC, Lin CJ. LIBSVM: a library for support vector machines 2001. , http://www.csie.ntu.edu.tw/~cjlin/libsvm
-
-
-
Chang, C.C.1
Lin, C.J.2
-
49
-
-
0002322469
-
On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other
-
Mann HB, Whitney DR. On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other. The Annals of Mathematical Statistics 1947, 18:50-60.
-
(1947)
The Annals of Mathematical Statistics
, vol.18
, pp. 50-60
-
-
Mann, H.B.1
Whitney, D.R.2
-
50
-
-
23144436398
-
The FoldX web server: an online force field
-
Schymkowitz J, Borg J, Stricher F, Nys R, Rousseau F, Serrano L. The FoldX web server: an online force field. Nucleic Acids Res 2005, 33.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Schymkowitz, J.1
Borg, J.2
Stricher, F.3
Nys, R.4
Rousseau, F.5
Serrano, L.6
-
51
-
-
0042594456
-
The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces
-
10.1093/bioinformatics/btg163, 12874065
-
Fischer TB, Arunachalam KV, Bailey D, Mangual V, Bakhru S, Russo R, Huang D, Paczkowski M, Lalchandani V, Ramachandra C, Ellison B, Galer S, Shapley J, Fuentes E, Tsai J. The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces. Bioinformatics 2003, 19(11):1453-1454. 10.1093/bioinformatics/btg163, 12874065.
-
(2003)
Bioinformatics
, vol.19
, Issue.11
, pp. 1453-1454
-
-
Fischer, T.B.1
Arunachalam, K.V.2
Bailey, D.3
Mangual, V.4
Bakhru, S.5
Russo, R.6
Huang, D.7
Paczkowski, M.8
Lalchandani, V.9
Ramachandra, C.10
Ellison, B.11
Galer, S.12
Shapley, J.13
Fuentes, E.14
Tsai, J.15
-
52
-
-
0034607551
-
Evaluation of direct and cooperative contributions towards the strength of buried hydrogen bonds and salt bridges
-
10.1006/jmbi.2000.3656, 10772866
-
Albeck S, Unger R, Schreiber G. Evaluation of direct and cooperative contributions towards the strength of buried hydrogen bonds and salt bridges. J Mol Biol 2000, 298(3):503-520. 10.1006/jmbi.2000.3656, 10772866.
-
(2000)
J Mol Biol
, vol.298
, Issue.3
, pp. 503-520
-
-
Albeck, S.1
Unger, R.2
Schreiber, G.3
-
53
-
-
0029564595
-
Are buried salt bridges important for protein stability and conformational specificity?
-
10.1038/nsb0295-122, 7749916
-
Waldburger CD, Schildbach JF, Sauer RT. Are buried salt bridges important for protein stability and conformational specificity?. Nat Struct Biol 1995, 2:122-128. 10.1038/nsb0295-122, 7749916.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 122-128
-
-
Waldburger, C.D.1
Schildbach, J.F.2
Sauer, R.T.3
-
54
-
-
0028204490
-
Do salt bridges stabilize proteins? A continuum electrostatic analysis
-
10.1002/pro.5560030206, 2142793, 8003958
-
Hendsch ZS, Tidor B. Do salt bridges stabilize proteins? A continuum electrostatic analysis. Protein Sci 1994, 3(2):211-226. 10.1002/pro.5560030206, 2142793, 8003958.
-
(1994)
Protein Sci
, vol.3
, Issue.2
, pp. 211-226
-
-
Hendsch, Z.S.1
Tidor, B.2
-
55
-
-
0028074974
-
Protein-protein recognition: Crystal structural analysis of a barnase-barstar complex at 2.0Å resolution
-
10.1021/bi00196a004, 8043575
-
Buckle AM, Schreiber G, Fersht AR. Protein-protein recognition: Crystal structural analysis of a barnase-barstar complex at 2.0Å resolution. Biochemistry 1994, 33(30):8878-8889. 10.1021/bi00196a004, 8043575.
-
(1994)
Biochemistry
, vol.33
, Issue.30
, pp. 8878-8889
-
-
Buckle, A.M.1
Schreiber, G.2
Fersht, A.R.3
|