The binding inteference database (BID): A compilation of amino acid hot spots in protein interfaces

Bioinformatics

Volumn 19, Issue 11, 2003, Pages 1453-1454

  Fischer, T B ^a   Arunachalam, K V ^a   Bailey, D ^a   Mangual, V ^a   Barkhru, S ^a   Russo, R ^a   Huang, D ^a   Paczkowski, M ^a   Lalchandani, V ^a   Ramachandra, C ^a   Ellison, B ^a   Galer, S ^a   Shapley, J ^a   Fuentes, E ^a   Tsai, J ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CHEMISTRY; CLASSIFICATION; DATA BASE; INFORMATION RETRIEVAL; INTERNET; METHODOLOGY; MOLECULAR GENETICS; MUTATION; PROTEIN BINDING; PROTEIN DATABASE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; BINDING INTERFACE DATABASE; COMPUTER GRAPHICS; COMPUTER INTERFACE; GENE MUTATION; MEDICAL LITERATURE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN STRUCTURE;

AMINO ACID SEQUENCE; AMINO ACIDS; BINDING SITES; DATABASE MANAGEMENT SYSTEMS; DATABASES, PROTEIN; INFORMATION STORAGE AND RETRIEVAL; INTERNET; MOLECULAR SEQUENCE DATA; MUTATION; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0042594456     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg163     Document Type: Article

References (7)

1. Bader, G.D., Betel, D. and Hogue, C.W. (2003) BIND: the biomolecular interaction network database. Nucleic Acids Res., 31, 248-250.
2. Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Rapp, B.A. and Wheeler, D.L. (2002) GenBank. Nucleic Acids Res., 30, 17-20.
3. Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
4. Bogan, A.A. and Thorn, K.S. (1998) Anatomy of hot spots in protein interfaces. J. Mol. Biol., 280, 1-9.
5. DeLano, W.L. (2002) Unraveling hot spots in binding interfaces: progress and challenges. Curr. Opin. Struct. Biol., 12, 14-20.
6. Thorn, K.S. and Bogan, A.A. (2001) ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions. Bioinformatics, 17, 284-285.
7. Xenarios, I., Fernandez, E., Salwinski, L., Duan, X.J., Thompson, M.J., Marcotte, E.M. and Eisenberg, D. (2001) DIP: the database of interacting proteins: 2001 update. Nucleic Acids Res., 29, 239-241.