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Volumn 29, Issue 8, 2011, Pages 1039-1046

Probing the reactivation process of sarin-inhibited acetylcholinesterase with α-nucleophiles: Hydroxylamine anion is predicted to be a better antidote with DFT calculations

Author keywords

Alpha nucleophiles; Density functional calculations; Hydroxylamine anion; OP inihited AChE; Reactivation

Indexed keywords

ALPHA-NUCLEOPHILES; DENSITY FUNCTIONAL CALCULATIONS; HYDROXYLAMINE ANION; OP-INIHITED ACHE; REACTIVATION;

EID: 79957902945     PISSN: 10933263     EISSN: 18734243     Source Type: Journal    
DOI: 10.1016/j.jmgm.2011.04.009     Document Type: Article
Times cited : (23)

References (50)
  • 1
    • 0002893825 scopus 로고    scopus 로고
    • Chemical warfare in Macmillan encyclopedia of chemistry
    • J.J. Lagowsky (Ed.) Simon and Schuster Macmillan, New York
    • C.A. Buntun, Chemical warfare in Macmillan encyclopedia of chemistry, in: J.J. Lagowsky (Ed.), Macmillan Reference USA, vol. 1, Simon and Schuster Macmillan, New York, 1997, pp. 343-346.
    • (1997) Macmillan Reference USA , vol.1 , pp. 343-346
    • Buntun, C.A.1
  • 2
    • 0002545188 scopus 로고
    • Organophosphorus cholinesterase inhibitors: Detoxification by microbial enzymes
    • J.W. Kelly, T.O. Baldwin (Eds.) Plenum Press, New York
    • J.J. DeFrank, Organophosphorus cholinesterase inhibitors: detoxification by microbial enzymes, in: J.W. Kelly, T.O. Baldwin (Eds.), Applications of Enzyme Biotechnology, Plenum Press, New York, 1991, pp. 165-180.
    • (1991) Applications of Enzyme Biotechnology , pp. 165-180
    • DeFrank, J.J.1
  • 3
    • 0345609711 scopus 로고
    • Phosphorylated cholinesterase: Their formation reactions and hydrolysis
    • E. Heilbronn-Wikstrom, Phosphorylated cholinesterase: their formation reactions and hydrolysis, Sven. Kem. Tidskr. 77 (1965) 598-631.
    • (1965) Sven. Kem. Tidskr. , vol.77 , pp. 598-631
    • Heilbronn-Wikstrom, E.1
  • 4
    • 0348109450 scopus 로고    scopus 로고
    • The growing impact of click chemistry on drug discovery
    • DOI 10.1016/S1359-6446(03)02933-7, PII S1359644603029337
    • H.C. Kolb, K.B. Sharpless, The growing impact of click chemistry on drug discovery, Drug Discov. Today 8 (2003) 1128-1137. (Pubitemid 37547919)
    • (2003) Drug Discovery Today , vol.8 , Issue.24 , pp. 1128-1137
    • Kolb, H.C.1    Sharpless, K.B.2
  • 5
    • 33845282579 scopus 로고
    • Acetylcholinesterase: Enzyme structure, reaction dynamics and virtual transition states
    • D.M. Quinn, Acetylcholinesterase: enzyme structure, reaction dynamics and virtual transition states, Chem. Rev. 87 (1987) 955-979.
    • (1987) Chem. Rev. , vol.87 , pp. 955-979
    • Quinn, D.M.1
  • 7
    • 13244292472 scopus 로고    scopus 로고
    • Comprehensive global energy minimum modeling of the sarin-serine adduct
    • J. Wang, S. Roszak, J. Gu, J. Leszczynski, Comprehensive global energy minimum modeling of the sarin-serine adduct, J. Phys. Chem. B 109 (2005) 1006-1014.
    • (2005) J. Phys. Chem. B , vol.109 , pp. 1006-1014
    • Wang, J.1    Roszak, S.2    Gu, J.3    Leszczynski, J.4
  • 8
    • 33646236571 scopus 로고    scopus 로고
    • Phosphonylation mechanisms of sarin and acetylcholinesterase: A model DFT study
    • J. Wang, J. Gu, J. Leszczynski, Phosphonylation mechanisms of sarin and acetylcholinesterase: a model DFT study, J. Phys. Chem. B 110 (2006) 7567-7573.
    • (2006) J. Phys. Chem. B , vol.110 , pp. 7567-7573
    • Wang, J.1    Gu, J.2    Leszczynski, J.3
  • 9
    • 0016823110 scopus 로고
    • Interaction of fluorescence probes with acetylcholinesterase site and specificity of propidium binding
    • P. Taylor, S. Lappi, Interaction of fluorescence probes with acetylcholinesterase site and specificity of propidium binding, Biochemistry 14 (1975) 1989-1997.
    • (1975) Biochemistry , vol.14 , pp. 1989-1997
    • Taylor, P.1    Lappi, S.2
  • 12
    • 0034673934 scopus 로고    scopus 로고
    • Mechanism of oxime reactivation of acetylcholinesterase analyzed by chirality and mutagenesis
    • DOI 10.1021/bi992906r
    • L. Wong, Z. Radić, R.J.M. Brüggemann, N. Hosea, H.A. Berman, P. Taylor, Mechanism of oxime reactivation of acetylcholinesterase analyzed by chirality, and mutagenesis, Biochemistry 39 (2000) 5750-5757. (Pubitemid 30307963)
    • (2000) Biochemistry , vol.39 , Issue.19 , pp. 5750-5757
    • Wong, L.1    Radic, Z.2    Bruggemann, R.J.M.3    Hosea, N.4    Berman, H.A.5    Taylor, P.6
  • 13
    • 34547456515 scopus 로고    scopus 로고
    • 2
    • DOI 10.1021/jp071529m
    • V.M. Bermudez, Computational study of the adsorption of trichlorophosphate, dimethyl methylphosphonate, and sarin on amorphous SiO2, J. Phys. Chem. C 111 (2007) 9314-9323. (Pubitemid 47166874)
    • (2007) Journal of Physical Chemistry C , vol.111 , Issue.26 , pp. 9314-9323
    • Bermudez, V.M.1
  • 14
    • 33645526430 scopus 로고    scopus 로고
    • Favorable pendant-amino metal chelation in VX nerve agent model systems
    • I. Bandyopadhyay, M.J. Kim, Y.S. Lee, D.G. Churchill, Favorable pendant-amino metal chelation in VX nerve agent model systems, J. Phys. Chem. A 110 (2006) 3655-3661.
    • (2006) J. Phys. Chem. A , vol.110 , pp. 3655-3661
    • Bandyopadhyay, I.1    Kim, M.J.2    Lee, Y.S.3    Churchill, D.G.4
  • 15
    • 27444433822 scopus 로고    scopus 로고
    • Ab initio molecular orbital and density functional studies on the solvolysis of sarin and O,S-dimethyl methylphosphonothiolate, a VX-like compound
    • DOI 10.1021/jo0502706
    • J. Šečkutė, J.L. Menke, R.J. Emnett, E.V. Patterson, C.J. Cramer, Ab initio molecular orbital, and density functional studies on the solvolysis of sarin and O,S-dimethyl methylphosphonothiolate, a VX-like compound, J. Org. Chem. 70 (2005) 8649-8660. (Pubitemid 41532794)
    • (2005) Journal of Organic Chemistry , vol.70 , Issue.22 , pp. 8649-8660
    • Seckute, J.1    Menke, J.L.2    Emnett, R.J.3    Patterson, E.V.4    Cramer, C.J.5
  • 16
    • 0035543503 scopus 로고    scopus 로고
    • Theoretical studies of reaction pathways and energy barriers for alkaline hydrolysis of phosphotriesterase substrates paraoxon and related toxic phosphofluoridate nerve agents
    • F. Zheng, C.G. Zhan, R.L. Ornstein, Theoretical studies of reaction pathways and energy barriers for alkaline hydrolysis of phosphotriesterase substrates paraoxon and related toxic phosphofluoridate nerve agents, J. Chem. Soc. Perkin Trans. 2 (2001) 2355-2363.
    • (2001) J. Chem. Soc. Perkin Trans. , vol.2 , pp. 2355-2363
    • Zheng, F.1    Zhan, C.G.2    Ornstein, R.L.3
  • 17
    • 84962361128 scopus 로고    scopus 로고
    • Molecular orbital calculations on the P-S bond cleavage step in the hydroperoxidolysis of nerve agent VX
    • E.V. Patterson, C.J. Cramer, Molecular orbital calculations on the P-S bond cleavage step in the hydroperoxidolysis of nerve agent VX, J. Phys. Org. Chem. 11 (1998) 232-240. (Pubitemid 128605116)
    • (1998) Journal of Physical Organic Chemistry , vol.11 , Issue.4 , pp. 232-240
    • Patterson, E.V.1    Cramer, C.J.2
  • 18
    • 43249091376 scopus 로고    scopus 로고
    • Computational studies on the solvolysis of the chemical warfare agent VX
    • DOI 10.1002/poc.1333
    • K.A. Daniel, L.A. Kopff, E.V. Patterson, Computational studies on the solvolysis of the chemical warfare agent VX, J. Phys. Org. Chem. 21 (2008) 321-328. (Pubitemid 351652806)
    • (2008) Journal of Physical Organic Chemistry , vol.21 , Issue.4 , pp. 321-328
    • Daniel, K.A.1    Kopff, L.A.2    Patterson, E.V.3
  • 19
    • 34248175851 scopus 로고    scopus 로고
    • Quantum mechanical calculations on the reaction of ethoxide anion with O,S-dimethyl methylphosphonothiolate
    • J.L. Menke, E.V. Patterson, Quantum mechanical calculations on the reaction of ethoxide anion with O,S-dimethyl methylphosphonothiolate, J. Mol. Struct. THEOCHEM 811 (2007) 281-291.
    • (2007) J. Mol. Struct. Theochem , vol.811 , pp. 281-291
    • Menke, J.L.1    Patterson, E.V.2
  • 20
    • 70349311635 scopus 로고    scopus 로고
    • Solvolysis of chemical warfare agent VX is more efficient with hydroxylamine anion: A computational study
    • M.A.S. Khan, M.K. Kesharwani, T. Bandyopadhyay, B. Ganguly, Solvolysis of chemical warfare agent VX is more efficient with hydroxylamine anion: a computational study, J. Mol. Graphics Model. 28 (2009) 177-182.
    • (2009) J. Mol. Graphics Model. , vol.28 , pp. 177-182
    • Khan, M.A.S.1    Kesharwani, M.K.2    Bandyopadhyay, T.3    Ganguly, B.4
  • 21
    • 76749127447 scopus 로고    scopus 로고
    • Remarkable effect of hydroxylamine anion towards the solvolysis of sarin: A DFT study
    • M.A.S. Khan, M.K. Kesharwani, T. Bandyopadhyay, B. Ganguly, Remarkable effect of hydroxylamine anion towards the solvolysis of sarin: a DFT study, J. Mol. Struct. THEOCHEM 944 (2010) 132-136.
    • (2010) J. Mol. Struct. Theochem , vol.944 , pp. 132-136
    • Khan, M.A.S.1    Kesharwani, M.K.2    Bandyopadhyay, T.3    Ganguly, B.4
  • 22
    • 33947398730 scopus 로고    scopus 로고
    • Oxime-induced reactivation of sarin-inhibited AChE: A theoretical mechanisms study
    • J. Wang, J. Gu, J. Leszczynski, M. Feliks, W.A. Sokalski, Oxime-induced reactivation of sarin-inhibited AChE: a theoretical mechanisms study, J. Phys. Chem. B 111 (2007) 2404-2408.
    • (2007) J. Phys. Chem. B , vol.111 , pp. 2404-2408
    • Wang, J.1    Gu, J.2    Leszczynski, J.3    Feliks, M.4    Sokalski, W.A.5
  • 23
    • 33646236571 scopus 로고    scopus 로고
    • Theoretical modeling study for the phosphonylation mechanisms of the catalytic triad of acetylcholinesterase by sarin
    • J. Wang, J. Gu, J. Leszczynski, Theoretical modeling study for the phosphonylation mechanisms of the catalytic triad of acetylcholinesterase by sarin, J. Phys. Chem. B 110 (2006) 7567-7573.
    • (2006) J. Phys. Chem. B , vol.110 , pp. 7567-7573
    • Wang, J.1    Gu, J.2    Leszczynski, J.3
  • 24
    • 67149126756 scopus 로고    scopus 로고
    • Nucleophilic reactivation of sarin-inhibited acetylcholinesterase: A molecular modeling study
    • R.T. Delfino, J.D. Figueroa-Villar, Nucleophilic reactivation of sarin-inhibited acetylcholinesterase: a molecular modeling study, J. Phys. Chem. B 113 (2009) 8402-8411.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 8402-8411
    • Delfino, R.T.1    Figueroa-Villar, J.D.2
  • 26
    • 5244268272 scopus 로고    scopus 로고
    • Merck molecular force field. V. Extension of MMFF94 using experimental data, additional computational data, and empirical rules
    • T.A. Halgren, Merck molecular force field. V. Extension of MMFF94 using experimental data, additional computational data, and empirical rules, J. Comput. Chem. 17 (1996) 616-641.
    • (1996) J. Comput. Chem. , vol.17 , pp. 616-641
    • Halgren, T.A.1
  • 27
    • 0011143599 scopus 로고    scopus 로고
    • Merck molecular force field. III. Molecular geometries and vibrational frequencies for MMFF94
    • T.A. Halgren, Merck molecular force field. III. Molecular geometries and vibrational frequencies for MMFF94, J. Comput. Chem. 17 (1996) 553-586. (Pubitemid 126567069)
    • (1996) Journal of Computational Chemistry , vol.17 , Issue.5-6 , pp. 553-586
    • Halgren, T.A.1
  • 28
    • 0011134241 scopus 로고    scopus 로고
    • Merck molecular force field. II. MMFF94 van der Waals and electrostatic parameters for intermolecular interactions
    • T.A. Halgren, Merck molecular force field. II. MMFF94 van der Waals and electrostatic parameters for intermolecular interactions, J. Comput. Chem. 17 (1996) 520-552. (Pubitemid 126567068)
    • (1996) Journal of Computational Chemistry , vol.17 , Issue.5-6 , pp. 520-552
    • Halgren, T.A.1
  • 29
    • 0037571112 scopus 로고    scopus 로고
    • Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
    • T.A. Halgren, Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94, J. Comput. Chem. 17 (1996) 490-519.
    • (1996) J. Comput. Chem. , vol.17 , pp. 490-519
    • Halgren, T.A.1
  • 30
    • 0001061464 scopus 로고    scopus 로고
    • Merck molecular force field. IV. Conformational energies and geometries for MMFF94
    • T.A. Halgren, R.B. Nachbar, Merck molecular force field. IV. Conformational energies and geometries for MMFF94, J. Comput. Chem. 17 (1996) 587-615. (Pubitemid 126567070)
    • (1996) Journal of Computational Chemistry , vol.17 , Issue.5-6 , pp. 587-615
    • Halgren, T.A.1    Nachbar, R.B.2
  • 31
    • 0001903222 scopus 로고
    • Note surla convergence des methodes de directions conjuguees
    • E. Polak, G. Ribiere, Note surla convergence des methodes de directions conjuguees, Rev. Fr. Inf. Rech. Oper. 16-R1 (1969) 35-43.
    • (1969) Rev. Fr. Inf. Rech. Oper. , vol.16 R1 , pp. 35-43
    • Polak, E.1    Ribiere, G.2
  • 32
    • 0043162336 scopus 로고
    • An internal-coordinate Monte Carlo method for searching conformational space
    • G. Chang, W.C. Guida, W.C. Still, An internal-coordinate Monte Carlo method for searching conformational space, J. Am. Chem. Soc. 111 (1989) 4379-4386.
    • (1989) J. Am. Chem. Soc. , vol.111 , pp. 4379-4386
    • Chang, G.1    Guida, W.C.2    Still, W.C.3
  • 34
    • 84986532529 scopus 로고
    • Cluster analysis of molecular conformations
    • P.S. Shenkin, D.Q. McDonald, Cluster analysis of molecular conformations, J. Comput. Chem. 15 (1994) 899-916.
    • (1994) J. Comput. Chem. , vol.15 , pp. 899-916
    • Shenkin, P.S.1    McDonald, D.Q.2
  • 35
    • 25844528896 scopus 로고    scopus 로고
    • Cages, baskets, ladders, and tubes: Conformational studies of polyhedral oligomeric silsesquioxanes
    • DOI 10.1021/jp052949j
    • S.D. Hillson, E. Smith, M. Zeldin, C.A. Parish, Cages, baskets, ladders, and tubes: conformational studies of polyhedral oligomeric silsesquioxanes, J. Phys. Chem. A 109 (2005) 8371-8378. (Pubitemid 41396247)
    • (2005) Journal of Physical Chemistry A , vol.109 , Issue.37 , pp. 8371-8378
    • Hillson, S.D.1    Smith, E.2    Zeldin, M.3    Parish, C.A.4
  • 36
    • 0000189651 scopus 로고
    • Density-functional thermo chemistry III. The role of exact exchange
    • A.D. Becke, Density-functional thermo chemistry III. The role of exact exchange, J. Chem. Phys. 98 (1993) 5648-5652.
    • (1993) J. Chem. Phys. , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 37
    • 0345491105 scopus 로고
    • Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
    • C. Lee, W. Yang, R.G. Parr, Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density, Phys. Rev. B 37 (1988) 785-789.
    • (1988) Phys. Rev. B , vol.37 , pp. 785-789
    • Lee, C.1    Yang, W.2    Parr, R.G.3
  • 38
    • 50649123208 scopus 로고    scopus 로고
    • Hydrolysis of nerve agents by model nucleophiles: A computational study
    • J.M. Beck, C.M. Hadad, Hydrolysis of nerve agents by model nucleophiles: a computational study, Chem. Biol. Interact. 175 (2008) 200-203.
    • (2008) Chem. Biol. Interact. , vol.175 , pp. 200-203
    • Beck, J.M.1    Hadad, C.M.2
  • 39
    • 11744256643 scopus 로고
    • Molecular interactions in solution: An overview of methods based on continuous distributions of the solvent
    • J. Tomasi, M. Persico, Molecular interactions in solution: an overview of methods based on continuous distributions of the solvent, Chem. Rev. 94 (1994) 2027-2094.
    • (1994) Chem. Rev. , vol.94 , pp. 2027-2094
    • Tomasi, J.1    Persico, M.2
  • 40
    • 84962359221 scopus 로고    scopus 로고
    • Ab initio study of solvated molecules: A new implementation of the polarizable continuum model
    • M. Cossi, V. Barone, R. Cammi, J. Tomasi, Ab initio study of solvated molecules: a new implementation of the polarizable continuum model, Chem. Phys. Lett. 255 (1996) 327-335.
    • (1996) Chem. Phys. Lett. , vol.255 , pp. 327-335
    • Cossi, M.1    Barone, V.2    Cammi, R.3    Tomasi, J.4
  • 41
    • 84961981991 scopus 로고    scopus 로고
    • A new definition of cavities for the computation of solvation free energies by the polarizable continuum model
    • V. Barone, M. Cossi, J. Tomasi, A new definition of cavities for the computation of solvation free energies by the polarizable continuum model, J. Chem. Phys. 107 (1997) 3210-3221.
    • (1997) J. Chem. Phys. , vol.107 , pp. 3210-3221
    • Barone, V.1    Cossi, M.2    Tomasi, J.3
  • 42
    • 84962428785 scopus 로고    scopus 로고
    • Geometry optimization of molecular structures in solution by the polarizable continuum model
    • V. Barone, M. Cossi, J. Tomasi, Geometry optimization of molecular structures in solution by the polarizable continuum model, J. Comput. Chem. 19 (1998) 404-417.
    • (1998) J. Comput. Chem. , vol.19 , pp. 404-417
    • Barone, V.1    Cossi, M.2    Tomasi, J.3
  • 43
    • 84961974961 scopus 로고    scopus 로고
    • Analytical second derivatives of the free energy in solution by polarizable continuum models
    • M. Cossi, V. Barone, Analytical second derivatives of the free energy in solution by polarizable continuum models, J. Chem. Phys. 109 (1998) 6246-6254.
    • (1998) J. Chem. Phys. , vol.109 , pp. 6246-6254
    • Cossi, M.1    Barone, V.2
  • 44
    • 33750614386 scopus 로고
    • Reaction path following in mass-weighted internal coordinates
    • C. González, H.B. Schlegel, Reaction path following in mass-weighted internal coordinates, J. Phys. Chem. 94 (1990) 5523-5527.
    • (1990) J. Phys. Chem. , vol.94 , pp. 5523-5527
    • González, C.1    Schlegel, H.B.2
  • 45
    • 36449008790 scopus 로고
    • Improved algorithms for reaction path following: Higher-order implicit algorithms
    • C. González, H.B. Schlegel, Improved algorithms for reaction path following: higher-order implicit algorithms, J. Chem. Phys. 95 (1991) 5853-5860.
    • (1991) J. Chem. Phys. , vol.95 , pp. 5853-5860
    • González, C.1    Schlegel, H.B.2
  • 47
    • 34247550159 scopus 로고    scopus 로고
    • Crystal structures of acetylcholinesterase in complex with organophosphorus compounds suggest that the acyl pocket modulates the aging reaction by precluding the formation of the trigonal bipyramidal transition state
    • DOI 10.1021/bi0621361
    • A. Hörnberg, A.-K. Tunemalm, F. Ekström, Crystal structures of acetylcholinesterase in complex with organophosphorus compounds suggest that the acyl pocket modulates the aging reaction by precluding the formation of the trigonal bipyramidal transition state, Biochemistry 46 (2007) 4815-4825. (Pubitemid 46651204)
    • (2007) Biochemistry , vol.46 , Issue.16 , pp. 4815-4825
    • Hornberg, A.1    Tunemalm, A.-K.2    Ekstrom, F.3
  • 48
    • 77952718967 scopus 로고    scopus 로고
    • Structural evidence that human acetylcholinesterase inhibited by tabun ages through O-dealkylation
    • E. Carletti, J.-P. Colletier, F. Dupeux, M. Trovaslet, P. Masson, F. Nachon, Structural evidence that human acetylcholinesterase inhibited by tabun ages through O-dealkylation, J. Med. Chem. 53 (2010) 4002-4008.
    • (2010) J. Med. Chem. , vol.53 , pp. 4002-4008
    • Carletti, E.1    Colletier, J.-P.2    Dupeux, F.3    Trovaslet, M.4    Masson, P.5    Nachon, F.6
  • 49
    • 77955551992 scopus 로고    scopus 로고
    • Aging mechanism of butyryl-cholinesterase inhibited by an N-methyl analogue of tabun: Implications of the trigonal-bipyramidal transition state rearrangement for the phosphylation or reactivation of cholinesterases
    • F. Nachon, E. Carletti, F. Worek, P. Masson, Aging mechanism of butyryl-cholinesterase inhibited by an N-methyl analogue of tabun: implications of the trigonal-bipyramidal transition state rearrangement for the phosphylation or reactivation of cholinesterases, Chem. Biol. Interact. 187 (2010) 44-48.
    • (2010) Chem. Biol. Interact. , vol.187 , pp. 44-48
    • Nachon, F.1    Carletti, E.2    Worek, F.3    Masson, P.4


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