Discordances between phylogenetic and morphological patterns in alpine leaf beetles attest to an intricate biogeographic history of lineages in postglacial Europe

Molecular Ecology

Volumn 20, Issue 11, 2011, Pages 2442-2463

  Triponez, Y ^a   Buerki, S ^b   Borer, M ^a   Naisbit, R E ^a   Rahier, M ^c   Alvarez, N ^d  

^a UNIVERSITY OF NEUCHÂTEL   (Switzerland)

^b JODRELL LABORATORY   (United Kingdom)

^c UNIVERSITY OF FRIBOURG   (Switzerland)

^d UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

lineage diversification; MP DIVA; Oreina; phylogeography; Pleistocene; species concept

Indexed keywords

MITOCHONDRIAL DNA; SPACER DNA;

ANIMAL; ARTICLE; BEETLE; DNA BARCODING; ECOSYSTEM; EUROPE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; HISTOLOGY; ICE COVER; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PARASITOLOGY; PHYLOGENY; PHYLOGEOGRAPHY; PLANT LEAF; TIME;

ANIMALS; BASE SEQUENCE; BEETLES; DNA BARCODING, TAXONOMIC; DNA, INTERGENIC; DNA, MITOCHONDRIAL; ECOSYSTEM; EUROPE; GENETIC VARIATION; ICE COVER; MOLECULAR SEQUENCE DATA; PHYLOGENY; PHYLOGEOGRAPHY; PLANT LEAVES; POLYMORPHISM, GENETIC; TIME FACTORS;

CHRYSOMELIDAE; COLEOPTERA; HEXAPODA; MYA;

EID: 79956351548     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2011.05096.x     Document Type: Article

References (78)

1. Akaike H, (1974) New look at statistical-model identification. IEEE Transactions on Automatic Control, 19, 716-723.
2. Alvarez N, Thiel-Egenter C, Tribsch A, et al. (2009) History or ecology? Substrate type as a major driver of spatial genetic structure in Alpine plants. Ecology Letters, 12, 632-640.
3. Bininda-Emonds ORP, Cardillo M, Jones KE, et al. (2007) The delayed rise of present-day mammals. Nature, 446, 507-512. (Pubitemid 46514725)
4. Borer M, Alvarez N, Buerki S, Margraf N, Rahier M, Naisbit RE, (2010) The phylogeography of an alpine leaf beetle: divergence within Oreina elongata spans several ice ages. Molecular Phylogenetics and Evolution, 57, 703-709.
5. Buerki S., Forest F, Alvarez N, Nylander JAA, Arrigo N, Sanmartín I., (2011) An evaluation of new parsimony-based versus parametric inference methods in biogeography: a case study using the globally distributed plant family Sapindaceae. Journal of Biogeography, 38, 531-550.
6. Coope GR, (1994) The response of insect faunas to glacial-interglacial climatic fluctuations. Philosophical Transactions: Biological Sciences, 344, 19-26.
7. Couvreur TLP, Franzke A, Al-Shehbaz IA, Bakker FT, Koch MA, Mummenhoff K, (2010) Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae). Molecular Biology and Evolution, 27, 55-71.
8. Dalén L, Nystrom V, Valdiosera C, et al. (2007) Ancient DNA reveals lack of postglacial habitat tracking in the arctic fox. Proceedings of the national academy of sciences of the United States of America, 104, 6726-6729. (Pubitemid 47175568)
9. De Queiroz K, Donoghue MJ, (1988) Phylogenetic systematics and the species problem. Cladistics, 4, 317-338.
10. Dobler S, Mardulyn P, Pasteels JM, Rowell-Rahier M, (1996) Host-plant switches and the evolution of chemical defense and life history in the leaf beetle genus Oreina. Evolution, 50, 2373-2386.
11. Donoghue MJ, (1985) A critique of the biological species concept and recommendations for a phylogenetic alternative. The Bryologist, 88, 172-181.
12. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
13. Espíndola A, Buerki S, Bedalov M, Küpfer P, Alvarez N, (2010) New insights into the phylogenetics and biogeography of Arum (Araceae): unravelling its evolutionary history. Botanical Journal of the Linnean Society, 163, 14-32.
14. Excoffier L, Laval G, Schneider S, (2005) Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
15. Gelman A, Rubin DB, (1992) Inference from iterative simulation using multiple sequences. Statistical Science, 7, 457-511.
16. Gomez-Zurita J, Vogler AP, (2003) Incongruent nuclear and mitochondrial phylogeographic patterns in the Timarcha goettingensis species complex (Coleoptera, Chrysomelidae). Journal of Evolutionary Biology, 16, 833-843. (Pubitemid 37073852)
17. Habel JC, Meyer M, El Mousadik A, Schmitt T, (2008) Africa goes Europe: the complete phylogeography of the marbled white butterfly species complex Melanargia galathea/M. lachesis (Lepidoptera: Satyridae). Organisms Diversity & Evolution, 8, 121-129. (Pubitemid 351633050)
18. Hall TA, (1999) Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
19. Haubrich K, Schmitt T, (2007) Cryptic differentiation in alpine-endemic, high-altitude butterflies reveals down-slope glacial refugia. Molecular Ecology, 16, 3643-3658. (Pubitemid 47383113)
20. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W, (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the USA, 101, 14812-14817. (Pubitemid 39410757)
21. Hewitt GM, (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
22. Hewitt GM, (2001) Speciation, hybrid zones and phylogeography-or seeing genes in space and time. Molecular Ecology, 10, 537-549. (Pubitemid 32406341)
23. Hewitt GM, (2004) Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, 359, 183-195. (Pubitemid 38231471)
24. Hsiao TH, Pasteels JM, (1999) Evolution of host-plant affiliation and chemical defense in Chrysolina-Oreina leaf beetles as revealed by mtDNA phylogenies. In: Advances in Chrysomelidae Biology (ed., Cox ML,), pp. 321-342. Backhuys, Leiden.
25. Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755. (Pubitemid 32851390)
26. Jolivet P, Petitpierre E, Daccordi M, (1986) Les plantes-hÃtes des Chrysomelidae. Quelques nouvelles précisions et additions (Coleoptera). Nouvelle Revue Entomologique, 3, 341-357.
27. Kalberer NM, Turlings TCJ, Rahier M, (2005) An alternative hibernation strategy involving sun-exposed 'hotspots', dispersal by flight, and host plant finding by olfaction in an alpine leaf beetle. Entomologia Experimentalis et Applicata, 114, 189-196. (Pubitemid 40398675)
28. Kippenberg H, (1994) Familie chrysomelidae. In: Die Käfer Mitteleuropas, 3. Supplementband (ed., Lohse GA, Lucht WH,), pp. 65-83. Krefeld, Germany.
29. Kippenberg H, (2008) Revision der untergattung Protorina WEISE der gattung Oreina CHEVROLAT (Coleoptera: Chrysomelidae: Chrysomelinae). Koleopterologische Rundschau, 78, 367-418.
30. Knoll S, Rowell-Rahier M, (1998) Distribution of genetic variance and isolation by distance in two leaf beetle species: Oreina cacaliae and Oreina speciosissima. Heredity, 81, 412-421. (Pubitemid 28519479)
31. Maddison WP, Maddison DR, (2010) Mesquite: a modular system for evolutionary analysis. Version 2.73. Available at. Accessed on 7 March 2011.
32. Mardulyn P, Milinkovitch MC, Pasteels JM, (1997) Phylogenetic analyses of DNA and allozyme data suggest that Gonioctena leaf beetles (Coleoptera; Chrysomelidae) experienced convergent evolution in their history of host-plant family shifts. Systematic Biology, 46, 722-747.
33. Margraf N, Verdon A, Rahier M, Naisbit RE, (2007) Glacial survival and local adaptation in an alpine leaf beetle. Molecular Ecology, 16, 2333-2343. (Pubitemid 46897162)
34. Mraz P, Gaudeul M, Rioux D, et al. (2007) Genetic structure of Hypochaeris uniflora (Asteraceae) suggests vicariance in the Carpathians and rapid post-glacial colonization of the Alps from an eastern Alpine refugium. Journal of Biogeography, 34, 2100-2114. (Pubitemid 350126001)
35. Nei M, (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
36. Nixon KC, (1999) The Parsimony Ratchet, a new method for rapid parsimony analysis. Cladistics-the International Journal of the Willi Hennig Society, 15, 407-414. (Pubitemid 30203167)
37. Nylander JAA, (2004) MrAIC.pl (v1.4.4). Program Distributed by the Author. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
38. Nylander JAA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey JL, (2004) Bayesian phylogenetic analysis of combined data. Systematic Biology, 53, 47-67. (Pubitemid 38370420)
39. Nylander JAA, Olsson U, Alström P, Sanmartín I, (2008) Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus). Systematic Biology, 57, 257-268.
40. Paradis E, (2010) pegas: an R package for population genetics with an integrated-modular approach. Bioinformatics, 26, 419-420.
41. Paradis E, Claude J, Strimmer K, (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290. (Pubitemid 38195693)
42. Pauls SU, Lumbsch HT, Haase P, (2006) Phylogeography of the montane caddisfly Drusus discolor: evidence for multiple refugia and periglacial survival. Molecular Ecology, 15, 2153-2169. (Pubitemid 43876458)
43. Pauls SU, Theissinger K, Ujvarosi L, Balint M, Haase P, (2009) Patterns of population structure in two closely related, partially sympatric caddisflies in Eastern Europe: historic introgression, limited dispersal, and cryptic diversity. Journal of the National American Benthological Society, 28, 517-536.
44. Pinceel J, Jordaens K, Pfenninger M, Backeljau T, (2005) Rangewide phylogeography of a terrestrial slug in Europe: evidence for Alpine refugia and rapid colonization after the Pleistocene glaciations. Molecular Ecology, 14, 1133-1150. (Pubitemid 40466240)
45. Planet PJ, Sarkar IN, (2005) mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests. Bioinformatics, 21, 4423-4424. (Pubitemid 41782937)
46. PrevišiÄ A, Walton C, KučiniÄ M, Mitrikeski PT, Kerovec M, (2009) Pleistocene divergence of Dinaric Drusus endemics (Trichoptera, Limnephilidae) in multiple microrefugia within the Balkan Peninsula. Molecular Ecology, 18, 634-647.
47. R Development Core Team (2009) A language and environment for statistical computing. Available at. Accessed on 7 March 2011.
48. Rabosky DL, (2006) LASER: a maximum likelihood toolkit for detecting temporal shits in diversification rates from molecular phylogenies. Evolutionary Bioinformatics Online, 2, 257-260.
49. Rambaut A, Drummond AJ, (2008) Tracer v1.4.1. Distributed by the Authors. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK. Available at. Accessed on 7 March 2011.
50. Ree RH, Smith SA, (2008) Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology, 57, 4-14.
51. Ronikier M, Cieslak E, Korbecka G, (2008) High genetic differentiation in the alpine plant Campanula alpina Jacq. (Campanulaceae): evidence for glacial survival in several Carpathian regions and long-term isolation between the Carpathians and the Alps. Molecular Ecology, 17, 1763-1775. (Pubitemid 351441702)
52. Ronquist F, (1996) DIVA 1.2. Computer programme distributed by the author. Available at. Accessed on 7 March 2011.
53. Ronquist F, (1997) Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. Systematic Biology, 46, 195-203.
54. Rousselet J, Zhao RX, Argal D, et al. (2010) The role of topography in structuring the demographic history of the pine processionary moth, Thaumetopoea pityocampa (Lepidoptera: Notodontidae). Journal of Biogeography, 37, 1478-1490.
55. Sanderson M.J., (2002) Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Molecular Biology and Evolution, 19, 101-109. (Pubitemid 34008052)
56. Sanderson M.J., (2004) r8S, program and documentation. Available at. Accessed on 7 March 2011.
57. Schmitt T, (2007) Molecular biogeography of Europe: Pleistocene cycles and postglacial trends. Frontiers in Zoology, 4, 13.
58. Schmitt T, (2009) Biogeographical and evolutionary importance of the European high mountain systems. Frontiers in Zoology, 6, 9.
59. Schmitt T, Rober S, Seitz A, (2005) Is the last glaciation the only relevant event for the present genetic population structure of the meadow brown butterfly Maniola jurtina (Lepidoptera: Nymphalidae)? Biological Journal of the Linnean Society, 85, 419-431. (Pubitemid 41080397)
60. Schmitt T, Hewitt GM, Muller P, (2006) Disjunct distributions during glacial and interglacial periods in mountain butterflies: Erebia epiphron as an example. Journal of Evolutionary Biology, 19, 108-113.
61. Servedio MR, Noor MAF, (2003) The role of reinforcement in speciation: theory and data meet. Annual Review of Ecology and Systematics, 34, 339-364. (Pubitemid 38171423)
62. Shapiro B, Drummond AJ, Rambaut A, et al. (2004) Rise and fall of the Beringian steppe bison. Science, 306, 1561-1565. (Pubitemid 39564953)
63. Sigman DM, Hain MP, Haug GH, (2010) The polar ocean and glacial cycles in atmospheric CO2 concentration. Nature, 466, 47-55.
64. Sikes DS, Lewis PO, (2001) Software Manual for PAUPRat: A Tool to Implement Parsimony Ratchet Searches using PAUP*. University of Connecticut, Storrs, CT.
65. Simon C, Frati F, Beckenbach A, et al. (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene-sequences and a compilation of conserved polymerase chain-reaction primers. Annals of the Entomological Society of America, 87, 651-701.
66. Sorenson MD, Franzosa EA, (2007) TreeRot, Version 3. Boston University, Boston, MA.
67. Spooner LJ, Ritchie MG, (2006) An unusual phylogeography in the bushcricket Ephippiger ephippiger from Southern France. Heredity, 97, 398-408. (Pubitemid 44851247)
68. Stewart JR, Lister AM, (2001) Cryptic northern refugia and the origins of the modern biota. Trends in Ecology & Evolution, 16, 608-613. (Pubitemid 32951786)
69. Stewart JR, Lister AM, Barnes I, et al. (2010) Refugia revisited: individualistic responses of species in space and time. Proceedings of the Royal Society B-Biological Sciences, 277, 661-671.
70. Swofford DL, (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and other Methods), Version 4.0b10. Sinauer Associates, Sunderland, MA.
71. Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595. (Pubitemid 19274682)
72. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The clustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882. (Pubitemid 28022245)
73. Triponez Y, Naisbit RE, Jean-Denis JB, Rahier M, Alvarez N, (2007) Genetic and environmental sources of variation in the autogenous chemical defense of a leaf beetle. Journal of Chemical Ecology, 33, 2011-2027.
74. Varga ZS, Schmitt T, (2008) Types of oreal and oreotundral disjunctions in the western Palearctic. Biological Journal of the Linnean Society, 93, 415-430.
75. Wiemers M, Fiedler K, (2007) Does the DNA barcoding gap exist?-a case study in blue butterflies (Lepidoptera: Lycaenidae). Frontiers in Zoology, 4, 8.
76. Wilkinson M, McInerney JO, Hirt RP, Foster PG, Embley TM, (2007) Of clades and clans: terms for phylogenetic relationships in unrooted trees. Trends in Ecology & Evolution, 22, 114-115. (Pubitemid 46273830)
77. Willis KJ, van Andel TH, (2004) Trees or no trees? The environments of central and eastern Europe during the Last Glaciation. Quaternary Science Reviews, 23, 2369-2387. (Pubitemid 39547785)
78. Yang ZH, (1994) Maximum-Likelihood phylogenetic estimation from DNA-sequences with variable rates over sites-approximate methods. Journal of Molecular Evolution, 39, 306-314.