Of clades and clans: terms for phylogenetic relationships in unrooted trees

Trends in Ecology and Evolution

Volumn 22, Issue 3, 2007, Pages 114-115

  Wilkinson, Mark ^a   McInerney, James O ^b   Hirt, Robert P ^c   Foster, Peter G ^a   Embley, T Martin ^c  

^a DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^b NATIONAL UNIVERSITY OF IRELAND   (Ireland)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MODEL; CLASSIFICATION; LETTER; METHODOLOGY; PHYLOGENY; POPULATION GENETICS; SEQUENCE HOMOLOGY;

CLASSIFICATION; GENETICS, POPULATION; MODELS, BIOLOGICAL; PHYLOGENY; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 33847062460     PISSN: 01695347     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tree.2007.01.002     Document Type: Letter

References (10)

1. Reeck G.R., et al. 'Homology' in proteins and nucleic acids: a terminology muddle and a way out of it. Cell 50 (1987) 667
2. Ben Ali A., et al. Phylogenetic relationships among algae based on complete large-subunit rRNA sequences. Int. J. Syst. Evol. Microbiol. 51 (2001) 737-749
3. Bowe L.M., et al. Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 4092-4097
4. Brochier C., et al. Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox. Genome Biol. 5 (2004) R17
5. Cnor B., et al. Maximum likelihood on four taxa phylogenetic trees: analytic solutions. In: Vingron M., et al. (Ed). RECOMB'03 (2003), ACM Press 7683
6. Hall B.G. Phylogenetic Trees Made Easy (2004), Sinauer Associates
7. Xia X. The rate heterogeneity of nonsynonymous substitutions in mammalian mitochondrial genes. Mol. Biol. Evol. 15 (1998) 336-344
8. Wilkinson M. Common cladistic information and its consensus representation: reduced adams and reduced cladistic consensus trees and profiles. Syst. Biol. 43 (1994) 343-368
9. Kitching I., et al. Cladistics: The Theory and Practice of Parsimony Analysis (1998), Oxford University Press
10. Page R.D.M., and Holmes E.C. Molecular Evolution: A Phylogenetic Approach (1998), Blackwell Science