Polymorphism and expression of the porcine Tenascin C gene associated with meat and carcass quality

Meat Science

Volumn 89, Issue 1, 2011, Pages 76-83

  Kayan, A ^a   Cinar, M U ^a   Uddin, M J ^a   Phatsara, C ^a,b   Wimmers, K ^c   Ponsuksili, S ^c   Tesfaye, D ^a   Looft, C ^a   Juengst, H ^a   Tholen, E ^a   Schellander, K ^a  

^a UNIVERSITY OF BONN   (Germany)

^b CHIANG MAI UNIVERSITY   (Thailand)

^c LEIBNIZ INSTITUTE FOR FARM ANIMAL BIOLOGY FBN   (Germany)

Author keywords

Association; EQTL; Meat and carcass quality; MRNA expression; Single nucleotide polymorphism; TNC gene

Indexed keywords

ASSOCIATION; EQTL; MRNA EXPRESSION; SINGLE NUCLEOTIDE POLYMORPHISM; TNC GENE;

MAMMALS; MEATS; MUSCLE; NUCLEOTIDES;

GENE EXPRESSION;

ANIMALIA; SUIDAE; SUS;

MESSENGER RNA; TENASCIN;

ANIMAL; ARTICLE; BODY COMPOSITION; COOKING; GENE EXPRESSION REGULATION; GENE FREQUENCY; GENETIC ASSOCIATION; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GENOTYPE; HAPLOTYPE; MEAT; METABOLISM; QUANTITATIVE TRAIT; SINGLE NUCLEOTIDE POLYMORPHISM; SWINE;

ANIMALS; BODY COMPOSITION; COOKING; GENE EXPRESSION REGULATION; GENE FREQUENCY; GENETIC ASSOCIATION STUDIES; GENETIC LINKAGE; GENETIC MARKERS; GENOTYPE; HAPLOTYPES; MEAT; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT, HERITABLE; RNA, MESSENGER; SUS SCROFA; TENASCIN;

EID: 79956109559     PISSN: 03091740     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meatsci.2011.04.001     Document Type: Article

References (39)

1. Bystrykh L., Weersing E., Dontje B., Sutton S., Pletcher M.T., Wiltshire T., et al. Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'. Nature Genetics 2005, 37(3):225-232.
2. Campbell W.G., Gordon S.E., Carlson C.J., Pattison J.S., Hamilton M.T., Booth F.W. Differential global gene expression in red and white skeletal muscle. American Journal of Physiology. Cell Physiology 2001, 280(4):C763-C768.
3. Cánovas A., Quintanilla R., Gallardo D., Díaz I., Noguera J.L., Ramírez O., et al. Functional and association studies on the pig HMGCR gene, a cholesterol-synthesis limiting enzyme. Animal 2010, 4(2):224-233.
4. Churchill G.A., Doerge R.W. Empirical threshold values for quantitative trait mapping. Genetics 1994, 138:963-971.
5. Davoli R., Fontanesi L., Cagnazzo M., Scotti E., Buttazzoni L., Yerle M., et al. Identification of SNPs, mapping and analysis of allele frequencies in two candidate genes for meat production traits: the porcine myosin heavy chain 2B (MYH4) and the skeletal muscle myosin regulatory light chain 2 (HUMMLC2B). Animal Genetics 2003, 34:221-225.
6. Essén-Gustavsson B., Karlström K., Lundström K. Muscle fibre characteristics and metabolic response at slaughter in pigs of different halothane genotypes and their relation to meat quality. Meat Science 1992, 31(1):1-11.
7. Fan B., Lkhagvadorj S., Cai W., Young J., Smith R.M., Dekkers J.C., et al. Identification of genetic markers associated with residual feed intake and meat quality traits in the pig. Meat Science 2010, 84(4):645-650.
8. Garrido J.J., Lahbib-Mansais Y., Geffrotin C., Yerle M., Vaiman M. Localization of the tenascin-C gene to pig Chromosome 1. Mammalian Genome 1995, 6(3):221.
9. Gibson G., Weir B. The quantitative genetics of transcription. Trends in Genetics 2005, 21(11):616-623.
10. Grindflek E., Hoen N., Sundvold H., Rothschild M.F., Plastow G., Lien S. Investigation of a peroxisome proliferator-activated receptor gamma haplotype effect on meat quality and carcass traits in pigs. Animal Genetics 2004, 35(3):238-241.
11. Große-Brinkhaus C., Phatsara C., Tholen E., Schellander K., Jonas E. Feinkartierung von QTL für Fleischqualitätsmerkmale auf dem porcinen Chromosom 1. Züchtungskunde 2009, 81:63-68.
12. Honikel K.O. Wasserbindungsvermogen von Fleisch. Mitteilungsblatt der BAFF 1986, 94:7150-7154.
13. Hubner N., Wallace C.A., Zimdahl H., Petretto E., Schulz H., Maciver F., et al. Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease. Nature Genetics 2005, 37:243-253.
14. Jansen R.C., Nap J.P. Genetical genomics: the added value from segregation. Trends in Genetics 2001, 17(7):388-391.
15. Karol A., Drögemüller C., Wimmers K., Schellander K., Leeb T. Molecular characterization of five porcine candidate genes for drip loss in pork. Animal Biotechnology 2010, 21:114-121.
16. Li Y., Xu Z., Li H., Xiong Y., Zuo B. Differential transcriptional analysis between red and white skeletal muscle of Chinese Meishan pigs. International Journal of Biological Sciences 2010, 6(4):350-360.
17. Liu G., Jennen D.G., Tholen E., Juengst H., Kleinwachter T., Holker M., et al. A genome scan reveals QTL for growth, fatness, leanness and meat quality in a Duroc-Pietrain resource population. Animal Genetics 2007, 38:241-252.
18. Maribo H., Olsen E.V., Barton-Gade P., Møller A.J., Karlsson A. Effect of early post-mortem cooling on temperature, pH fall and meat quality in pigs. Meat Science 1998, 50(1):115-129.
19. Michaelson J.J., Loguercio S., Beyer A. Detection and interpretation of expression quantitative trait loci (eQTL). Methods 2009, 48(3):265-276.
20. Morley M., Molony C.M., Weber T.M., Devlin J.L., Ewens K.G., Spielman R.S., et al. Genetic analysis of genome-wide variation in human gene expression. Nature 2004, 430(7001):743-747.
21. Otto G., Roehe R., Looft H., Thoelking L., Kalm E. Comparison of different methods for determination of drip loss and their relationships to meat quality and carcass characteristics in pigs. Meat Science 2004, 68(3):401-409.
22. Paszek A.A., Wilkie P.J., Flickinger G.H., Miller L.M., Louis C.F., Rohrer G.A., et al. Interval mapping of carcass and meat quality traits in a divergent swine cross. Animal Biotechnology 2001, 12:155-165.
23. Petretto E., Mangion J., Dickens N.J., Cook S.A., Kumaran M.K., Lu H., et al. Heritability and tissue specificity of expression quantitative trait loci. PLoS Genetics 2006, 2(10):e172.
24. Ponsuksili S., Jonas E., Murani E., Phatsara C., Srikanchai T., Walz C., et al. Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle. BMC Genomics 2008, 9(1):367.
25. Ponsuksili S., Murani E., Phatsara C., Jonas E., Walz C., Schwerin M., et al. Expression profiling of muscle reveals transcripts differentially expressed in muscle that affect water-holding capacity of pork. Journal of Agricultural and Food Chemistry 2008, 56(21):10311-10317.
26. Ponsuksili S., Murani E., Phatsara C., Schwerin M., Schellander K., Wimmers K. Expression quantitative trait loci analysis of genes in porcine muscle by quantitative real-time RT-PCR compared to microarray data. Heredity 2010, 105(3):309-317.
27. Qiao J., Wang N., Ngadi M.O., Gunenc A., Monroy M., Gariépy C., et al. Prediction of drip-loss, pH, and color for pork using a hyperspectral imaging technique. Meat Science 2007, 76(1):1-8.
28. Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology 2000, 132:365-386.
29. Russo V., Fontanesi L., Scotti E., Beretti F., Davoli R., Nanni Costa L., et al. Single nucleotide polymorphisms in several porcine cathepsin genes are associated with growth, carcass, and production traits in Italian Large White pigs. Journal of Animal Science 2008, 86(12):3300-3314.
30. Sarasa-Renedo A., Chiquet M. Mechanical signals regulating extracellular matrix gene expression in fibroblasts. Scandinavian Journal of Medicine & Science in Sports 2005, 15(4):223-230.
31. Seaton G., Haley C.S., Knott S.A., Kearsey M., Visscher P.M. QTL express: Mapping quantitative trait loci in simple and complex pedigrees. Bioinformatics 2002, 18(2):339-340.
32. Srikanchai T., Murani E., Phatsara C., Schwerin M., Schellander K., Ponsuksili S., et al. Association of ZYX polymorphisms with carcass and meat quality traits in commercial pigs. Meat Science 2010, 84(1):159-164.
33. Srikanchai T., Murani E., Wimmers K., Ponsuksili S. Four loci differentially expressed in muscle tissue depending on water-holding capacity are associated with meat quality in commercial pig herds. Molecular Biology Reports 2010, 37(1):595-601.
34. Stephens J.C., Schneider J.A., Tanguay D.A., Choi J., Acharya T., Stanley S.E., et al. Haplotype variation and linkage disequilibrium in 313 human genes. Science 2001, 293(5529):489-493.
35. Stranger B.E., Forrest M.S., Clark A.G., Minichiello M.J., Deutsch S., Lyle R., et al. Genome-wide associations of gene expression variation in humans. PLoS Genetics 2005, 1(6):e78.
36. Takala T.E., Virtanen P. Biochemical composition of muscle extracellular matrix: the effect of loading. Scandinavian Journal of Medicine & Science in Sports 2000, 10(6):321-325.
37. Velleman S.G. Role of the extracellular matrix in muscle growth and development. Journal of Animal Science 2002, 80(E-Suppl_2):E8-E13.
38. Warner R.D., Kauffman R.G., Greaser M.L. Muscle protein changes post mortem in relation to pork quality traits. Meat Science 1997, 45(3):339-352.
39. ZDS Zentralverband der Deutschen Schweineproduktion e.V. (2004). Richtlinie fuer die Stationspruefung auf Mastleistung, Schlachtkoerperwert und Fleischbeschaffenheit Beim Schwein 2004, Ausschuss fuer Leistungspruefung und Zuchtwertschaetzung, Bonn, Germany.