-
1
-
-
34548697503
-
Deletion of ultraconserved elements yields viable mice
-
Ahituv N, Zhu Y, Visel A, Holt A, Afzal V, Pennacchio LA, Rubin EM. 2007. Deletion of ultraconserved elements yields viable mice. PLoS Biol. 5:e234.
-
(2007)
PLoS Biol
, vol.5
-
-
Ahituv, N.1
Zhu, Y.2
Visel, A.3
Holt, A.4
Afzal, V.5
Pennacchio, L.A.6
Rubin, E.M.7
-
2
-
-
0034563442
-
Normalisation of Cereal Endosperm EST Libraries for Structural and Functional Genomic Analysis
-
Ali S, Holloway B, Taylor WC. 2000. Normalisation of cereal endosperm EST libraries for structural and functional genomic analysis. Plant Mol Biol Rep. 18:123-132. (Pubitemid 33292980)
-
(2000)
Plant Molecular Biology Reporter
, vol.18
, Issue.2
, pp. 123-132
-
-
Ali, S.1
Holloway, B.2
Taylor, W.C.3
-
3
-
-
0347238465
-
Membrane-based spotted cDNA arrays
-
Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press
-
Becker KG, Wood WH III, Cheadle C. 2003. Membrane-based spotted cDNA arrays. In: Botwell D, Sambrook J, editors. DNA microarrays. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press. p. 289-306.
-
(2003)
DNA Microarrays
, pp. 289-306
-
-
Becker, K.G.1
Wood III, W.H.2
Cheadle, C.3
-
4
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
DOI 10.1038/nature05874, PII NATURE05874
-
Birney E, Stamatoyannopoulos JA, Dutta A, et al. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816. (Pubitemid 46920138)
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
-
5
-
-
0026489906
-
The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
-
Brockdorff N, Ashworth A, Kay GF, McCabe VM, Norris DP, Cooper PJ, Swift S, Rastan S. 1992. The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell 71:515-526.
-
(1992)
Cell
, vol.71
, pp. 515-526
-
-
Brockdorff, N.1
Ashworth, A.2
Kay, G.F.3
McCabe, V.M.4
Norris, D.P.5
Cooper, P.J.6
Swift, S.7
Rastan, S.8
-
6
-
-
47249107415
-
Processing of naturally occurring sense/antisense tran scripts of the vertebrate Slc34a gene into short RNAs
-
Carlile M, Nalbant P, Preston-Fayers K, McHaffie GS, Werner A. 2008. Processing of naturally occurring sense/antisense tran scripts of the vertebrate Slc34a gene into short RNAs. Physiol Genomics 34:95-100.
-
(2008)
Physiol Genomics
, vol.34
, pp. 95-100
-
-
Carlile, M.1
Nalbant, P.2
Preston-Fayers, K.3
McHaffie, G.S.4
Werner, A.5
-
7
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S, et al. 2005. The transcriptional landscape of the mammalian genome. Science 309:1559-1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
-
8
-
-
22744439568
-
Evolution at two levels: On genes and form
-
Carroll SB. 2005. Evolution at two levels: on genes and form. PLoS Biol. 3:e245.
-
(2005)
PLoS Biol
, vol.3
-
-
Carroll, S.B.1
-
10
-
-
0031829657
-
Sex-related genes, directional sexual selection, and speciation
-
Civetta A, Singh RS. 1998. Sex-related genes, directional sexual selection, and speciation. Mol Biol Evol. 15:901-909. (Pubitemid 28321888)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.7
, pp. 901-909
-
-
Civetta, A.1
Singh, R.S.2
-
11
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
DOI 10.1038/nature06341, PII NATURE06341
-
Clark AG, Eisen MB, Smith DR, et al. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218. (Pubitemid 351972300)
-
(2007)
Nature
, vol.450
, Issue.7167
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
-
12
-
-
57149107578
-
Differentiating protein-coding and noncoding RNA: Challenges and ambiguities
-
Dinger ME, Pang KC, Mercer TR, Mattick JS. 2008. Differentiating protein-coding and noncoding RNA: challenges and ambiguities. PloS Comput Bio. 4:e1000176.
-
(2008)
PloS Comput Bio
, vol.4
-
-
Dinger, M.E.1
Pang, K.C.2
Mercer, T.R.3
Mattick, J.S.4
-
13
-
-
0000164805
-
On the sterility of the interracial hybrids in Drosophila pseudoobscura
-
Dobzhansky T. 1933. On the sterility of the interracial hybrids in Drosophila pseudoobscura. Proc Natl Acad Sci USA. 19:397-403.
-
(1933)
Proc Natl Acad Sci USA
, vol.19
, pp. 397-403
-
-
Dobzhansky, T.1
-
15
-
-
0033954323
-
Non-coding, mRNA-like RNAs database Y2K
-
Erdmann VA, Szymanski M, Hochberg A, Groot N, Barciszewski J. 2000. Non-coding, mRNA-like RNAs database Y2K. Nucleic Acids Res. 28:197-200. (Pubitemid 30047757)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 197-200
-
-
Erdmann, V.A.1
Szymanski, M.2
Hochberg, A.3
De Groot, N.4
Barciszewski, J.5
-
17
-
-
58149191274
-
Rfam: Updates to the RNA families database
-
11 co-authors
-
Gardner PP, Daub J, Tate JG, et al. (11 co-authors). 2009. Rfam: updates to the RNA families database. Nucleic Acids Res. 37:D136-D140.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
-
19
-
-
0036259726
-
The bereft gene, a potential target of the neural selector gene cut, contributes to bristle morphogenesis
-
Hardiman KE, Brewster R, Khan SM, Deo M, Bodmer R. 2002. The bereft gene, a potential target of the neural selector gene cut, contributes to bristle morphogenesis. Genetics 161:231-247. (Pubitemid 34564050)
-
(2002)
Genetics
, vol.161
, Issue.1
, pp. 231-247
-
-
Hardiman, K.E.1
Brewster, R.2
Khan, S.M.3
Deo, M.4
Bodmer, R.5
-
20
-
-
67650022866
-
Conserved introns reveal novel transcripts in Drosophila melanogaster
-
11 co-authors
-
Hiller M, Findeiss S, Lein S, et al. (11 co-authors). 2009. Conserved introns reveal novel transcripts in Drosophila melanogaster. Genome Res. 19:1289-1300.
-
(2009)
Genome Res
, vol.19
, pp. 1289-1300
-
-
Hiller, M.1
Findeiss, S.2
Lein, S.3
-
21
-
-
34247855863
-
The locus of evolution: Evo devo and the genetics of adaptation
-
DOI 10.1111/j.1558-5646.2007.00105.x
-
Hoekstra HE, Coyne JA. 2007. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61:995-1016. (Pubitemid 46699436)
-
(2007)
Evolution
, vol.61
, Issue.5
, pp. 995-1016
-
-
Hoekstra, H.E.1
Coyne, J.A.2
-
22
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
IHGSC
-
IHGSC. 2004. Finishing the euchromatic sequence of the human genome. Nature 431:931-945.
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
23
-
-
29244485152
-
Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila
-
DOI 10.1111/j.1365-2443.2005.00910.x
-
Inagaki S, Numata K, Kondo T, Tomita M, Yasuda K, Kanai A, Kageyama Y. 2005. Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila. Genes Cells. 10:1163-1173. (Pubitemid 41830075)
-
(2005)
Genes to Cells
, vol.10
, Issue.12
, pp. 1163-1173
-
-
Inagaki, S.1
Numata, K.2
Kondo, T.3
Tomita, M.4
Yasuda, K.5
Kanai, A.6
Kageyama, Y.7
-
24
-
-
72449139061
-
Evolution of sex-dependent gene expression in three recently diverged species of Drosophila
-
Jiang Z-F, Machado CA. 2009. Evolution of sex-dependent gene expression in three recently diverged species of Drosophila. Genetics 183:1175-1185.
-
(2009)
Genetics
, vol.183
, pp. 1175-1185
-
-
Jiang, Z.-F.1
MacHado, C.A.2
-
25
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
DOI 10.1126/science.1138341
-
Kapranov P, Cheng J, Dike S, et al. (22 co-authors). 2007. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316:1484-1488. (Pubitemid 46906616)
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
Bell, I.11
Cheung, E.12
Drenkow, J.13
Dumais, E.14
Patel, S.15
Helt, G.16
Ganesh, M.17
Ghosh, S.18
Piccolboni, A.19
Sementchenko, V.20
Tammana, H.21
Gingeras, T.R.22
more..
-
26
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent WJ. 2002. BLAT-the BLAST-like alignment tool. Genome Res. 12:656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
27
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King MC, Wilson AC. 1975. Evolution at two levels in humans and chimpanzees. Science 188:107-116.
-
(1975)
Science
, vol.188
, pp. 107-116
-
-
King, M.C.1
Wilson, A.C.2
-
28
-
-
34447573973
-
Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA
-
DOI 10.1038/ncb1595, PII NCB1595
-
Kondo T, Hashimoto Y, Kato K, Inagaki S, Hayashi S, Kageyama Y. 2007. Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA. Nat Cell Biol. 9:660-665. (Pubitemid 47214728)
-
(2007)
Nature Cell Biology
, vol.9
, Issue.6
, pp. 660-665
-
-
Kondo, T.1
Hashimoto, Y.2
Kato, K.3
Inagaki, S.4
Hayashi, S.5
Kageyama, Y.6
-
29
-
-
77954786287
-
Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis
-
Kondo T, Plaza S, Zanet J, Benrabah E, Valenti P, Hashimoto Y, Kobayashi S, Payre F, Kageyama Y. 2010. Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis. Science 329:336-339.
-
(2010)
Science
, vol.329
, pp. 336-339
-
-
Kondo, T.1
Plaza, S.2
Zanet, J.3
Benrabah, E.4
Valenti, P.5
Hashimoto, Y.6
Kobayashi, S.7
Payre, F.8
Kageyama, Y.9
-
30
-
-
68249090481
-
The genomics of speciation in Drosophila: Diversity, divergence, and introgression estimated using low-coverage genome sequencing
-
Kulathinal RJ, Stevison LS, Noor MA. 2009. The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing. PLoS Genet. 5:e1000550.
-
(2009)
PLoS Genet
, vol.5
-
-
Kulathinal, R.J.1
Stevison, L.S.2
Noor, M.A.3
-
31
-
-
67949086754
-
Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster
-
Li Z, Liu M, Zhang L, Zhang WX, Gao G, Zhu ZY, Wei LP, Fan QC, Long MY. 2009. Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res. 37:4308-4314.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4308-4314
-
-
Li, Z.1
Liu, M.2
Zhang, L.3
Zhang, W.X.4
Gao, G.5
Zhu, Z.Y.6
Wei, L.P.7
Fan, Q.C.8
Long, M.Y.9
-
32
-
-
0023332565
-
Novel transcripts from the Ultrabithorax domain of the bithorax complex
-
Lipshitz HD, Peattie DA, Hogness DS. 1987. Novel transcripts from the Ultrabithorax domain of the bithorax complex. Genes Dev. 1:307-322.
-
(1987)
Genes Dev
, vol.1
, pp. 307-322
-
-
Lipshitz, H.D.1
Peattie, D.A.2
Hogness, D.S.3
-
33
-
-
39749083331
-
The birth and death of microRNA genes in Drosophila
-
DOI 10.1038/ng.73, PII NG73
-
Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. 2008. The birth and death of microRNA genes in Drosophila. Nat Genet. 40:351-355. (Pubitemid 351311763)
-
(2008)
Nature Genetics
, vol.40
, Issue.3
, pp. 351-355
-
-
Lu, J.1
Shen, Y.2
Wu, Q.3
Kumar, S.4
He, B.5
Shi, S.6
Carthew, R.W.7
Wang, S.M.8
Wu, C.-I.9
-
34
-
-
34249074723
-
Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis
-
DOI 10.1534/genetics.106.064758
-
Machado CA, Haselkorn TS, Noor MA. 2007. Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific introgression in Drosophila pseudoobscura and D. persimilis. Genetics 175: 1289-1306. (Pubitemid 46798231)
-
(2007)
Genetics
, vol.175
, Issue.3
, pp. 1289-1306
-
-
Machado, C.A.1
Haselkorn, T.S.2
Noor, M.A.F.3
-
35
-
-
0037565090
-
The causes of phylogenetic conflict in a classic Drosophila species group
-
DOI 10.1098/rspb.2003.2333
-
Machado CA, Hey J. 2003. The causes of phylogenetic conflict in a classic Drosophila species group. Proc R Soc Lond B Biol Sci. 270:1193-1202. (Pubitemid 36683465)
-
(2003)
Proceedings of the Royal Society B: Biological Sciences
, vol.270
, Issue.1520
, pp. 1193-1202
-
-
Machado, C.A.1
Hey, J.2
-
36
-
-
0036215045
-
Inferring the history of speciation from multilocus DNA sequence data: The case of Drosophila pseudoobscura and close relatives
-
Machado CA, Kliman RM, Markert JA, Hey J. 2002. Inferring the history of speciation using multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Mol Biol Evol. 19:472-488. (Pubitemid 34289423)
-
(2002)
Molecular Biology and Evolution
, vol.19
, Issue.4
, pp. 472-488
-
-
Machado, C.A.1
Kliman, R.M.2
Markert, J.A.3
Hey, J.4
-
37
-
-
33749153857
-
Biological function of unannotated transcription during the early development of Drosophila melanogaster
-
DOI 10.1038/ng1875, PII NG1875
-
Manak JR, Dike S, Sementchenko V, et al. (11 co-authors). 2006. Biological function of unannotated transcription during the early development of Drosophila melanogaster. Nat Genet. 38:1151-1158. (Pubitemid 44470360)
-
(2006)
Nature Genetics
, vol.38
, Issue.10
, pp. 1151-1158
-
-
Manak, J.R.1
Dike, S.2
Sementchenko, V.3
Kapranov, P.4
Biemar, F.5
Long, J.6
Cheng, J.7
Bell, I.8
Ghosh, S.9
Piccolboni, A.10
Gingeras, T.R.11
-
38
-
-
1142281988
-
A Noncoding RNA Is Required for the Repression of RNApolII-Dependent Transcription in Primordial Germ Cells
-
DOI 10.1016/j.cub.2003.12.036
-
Martinho RG, Kunwar PS, Casanova J, Lehmann R. 2004. A noncoding RNA is required for the repression of RNApolII-dependent transcription in primordial germ cells. Curr Biol. 14:159-165. (Pubitemid 38203930)
-
(2004)
Current Biology
, vol.14
, Issue.2
, pp. 159-165
-
-
Martinho, R.G.1
Kunwar, P.S.2
Casanova, J.3
Lehmann, R.4
-
39
-
-
0141867857
-
Challenging the dogma: The hidden layer of non-protein-coding RNAs in complex organisms
-
DOI 10.1002/bies.10332
-
Mattick JS. 2003. Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays 25: 930-939. (Pubitemid 37221517)
-
(2003)
BioEssays
, vol.25
, Issue.10
, pp. 930-939
-
-
Mattick, J.S.1
-
40
-
-
34249740942
-
A new paradigm for developmental biology
-
DOI 10.1242/jeb.005017
-
Mattick JS. 2007. A new paradigm for developmental biology. J Exp Biol. 210:1526-1547. (Pubitemid 46841958)
-
(2007)
Journal of Experimental Biology
, vol.210
, Issue.9
, pp. 1526-1547
-
-
Mattick, J.S.1
-
41
-
-
65649092633
-
The genetic signatures of noncoding RNAs
-
Mattick JS. 2009. The genetic signatures of noncoding RNAs. PloS Genetics. 5:e1000459.
-
(2009)
PloS Genetics
, vol.5
-
-
Mattick, J.S.1
-
44
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
DOI 10.1126/science.1158441
-
Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. 2008. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320: 1344-1349. (Pubitemid 351929471)
-
(2008)
Science
, vol.320
, Issue.5881
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
45
-
-
0030461398
-
Requirement for a noncoding RNA in Drosophila polar granules for germ cell establishment
-
DOI 10.1126/science.274.5295.2075
-
Nakamura A, Amikura R, Mukai M, Kobayashi S, Lasko PF. 1996. Requirement for a noncoding RNA in Drosophila polar granules for germ cell establishment. Science 274:2075-2079. (Pubitemid 27021527)
-
(1996)
Science
, vol.274
, Issue.5295
, pp. 2075-2079
-
-
Nakamura, A.1
Amikura, R.2
Mukai, M.3
Kobayashi, S.4
Lasko, P.F.5
-
46
-
-
7244259100
-
Megabase deletions of gene deserts result in viable mice
-
DOI 10.1038/nature03022
-
Nobrega MA, Zhu Y, Plajzer-Frick I, Afzal V, Rubin EM. 2004. Megabase deletions of gene deserts result in viable mice. Nature 431:988-993. (Pubitemid 39434420)
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 988-993
-
-
Nobrega, M.A.1
Zhu, Y.2
Plajer-Frick, I.3
Afzal, Y.4
Rubin, E.M.5
-
47
-
-
37249004679
-
Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions
-
DOI 10.1534/genetics.107.070672
-
Noor MAF, Garfield DA, Schaeffer SW, Machado CA. 2007. Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions. Genetics 177:1417-1428. (Pubitemid 350277041)
-
(2007)
Genetics
, vol.177
, Issue.3
, pp. 1417-1428
-
-
Noor, M.A.F.1
Garfield, D.A.2
Schaeffer, S.W.3
Machado, C.A.4
-
48
-
-
0034923452
-
The genetics of reproductive isolation and the potential for gene exchange between Drosophila Pseudoobscura and D. Persimilis via backcross hybrid males
-
Noor MAF, Grams KL, Bertucci LA, Almendarez Y, Reiland J, Smith KR. 2001. The genetics of reproductive isolation and the potential for gene exchange between Drosophila pseudoobscura and D. persimilis via backcross hybrid males. Evolution 55: 512-521. (Pubitemid 32663459)
-
(2001)
Evolution
, vol.55
, Issue.3
, pp. 512-521
-
-
Noor, M.A.F.1
Grams, K.L.2
Bertucci, L.A.3
Almendarez, Y.4
Reiland, J.5
Smith, K.R.6
-
49
-
-
0035833999
-
Chromosomal inversions and the reproductive isolation of species
-
DOI 10.1073/pnas.221274498
-
Noor MAF, Grams KL, Bertucci LA, Reiland J. 2001. Chromosomal inversions and the reproductive isolation of species. Proc Natl Acad Sci USA. 98:12084-12088. (Pubitemid 32959830)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.21
, pp. 12084-12088
-
-
Noor, M.A.F.1
Gratos, K.L.2
Bertucci, L.A.3
Reiland, J.4
-
50
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
DOI 10.1038/nature01266
-
Okazaki Y, Furuno M, Kasukawa T, et al. (139 co-authors). 2002. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420:563-573. (Pubitemid 35477049)
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 563-573
-
-
Hayashizaki, Y.1
Okazaki, Y.2
Furuno, M.3
Kasukawa, T.4
Adachi, J.5
Bono, H.6
Kondo, S.7
Nikaido, I.8
Osato, N.9
Saito, R.10
Suzuki, H.11
Yamanaka, I.12
Kiyosawa, H.13
Yagi, K.14
Tomaru, Y.15
Hasegawa, Y.16
Nogami, A.17
Schonbach, C.18
Gojobori, T.19
Baldarelli, R.20
Hill, D.P.21
Bult, C.22
Hume, D.A.23
Quackenbush, J.24
Schriml, L.M.25
Kanapin, A.26
Matsuda, H.27
Batalov, S.28
Beisel, K.W.29
Blake, J.A.30
Bradt, D.31
Brusic, V.32
Chothia, C.33
Corbani, L.E.34
Cousins, S.35
Dalla, E.36
Dragani, T.A.37
Fletcher, C.F.38
Forrest, A.39
Frazer, K.S.40
Gaasterland, T.41
Gariboldi, M.42
Gissi, C.43
Godzik, A.44
Gough, J.45
Grimmond, S.46
Gustincich, S.47
Hirokawa, N.48
Jackson, I.J.49
Jarvis, E.D.50
Kanai, A.51
Kawaji, H.52
Kawasawa, Y.53
Kedzierski, R.M.54
King, B.L.55
Konagaya, A.56
Kurochkin, I.V.57
Lee, Y.58
Lenhard, B.59
Lyons, P.A.60
Maglott, D.R.61
Maltais, L.62
Marchionni, L.63
McKenzie, L.64
Miki, H.65
Nagashima, T.66
Numata, K.67
Okido, T.68
Pavan, W.J.69
Pertea, G.70
Pesole, G.71
Petrovsky, N.72
Pillai, R.73
Pontius, J.U.74
Qi, D.75
Ramachandran, S.76
Ravasi, T.77
Reed, J.C.78
Reed, D.J.79
Reid, J.80
Ring, B.Z.81
Ringwald, M.82
Sandelin, A.83
Schneider, C.84
Semple, C.A.M.85
Setou, M.86
Shimada, K.87
Sultana, R.88
Takenaka, Y.89
Taylor, M.S.90
Teasdale, R.D.91
Tomita, M.92
Verardo, R.93
Wagner, L.94
Wahlested, C.95
Wang, Y.96
Watanabe, Y.97
Wells, C.98
Wilming, L.G.99
more..
-
51
-
-
0023388629
-
Genetics of male and female sterility in hybrids of Drosophila pseudoobscura and D. persimilis
-
Orr HA. 1987. Genetics of male and female sterility in hybrids of Drosophila pseudoobscura and D. persimilis. Genetics 116: 555-563.
-
(1987)
Genetics
, vol.116
, pp. 555-563
-
-
Orr, H.A.1
-
52
-
-
29444457713
-
Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function
-
DOI 10.1016/j.tig.2005.10.003, PII S0168952505003227
-
Pang KC, Frith MC, Mattick JS. 2006. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends Genet. 22:1-5. (Pubitemid 43011990)
-
(2006)
Trends in Genetics
, vol.22
, Issue.1
, pp. 1-5
-
-
Pang, K.C.1
Frith, M.C.2
Mattick, J.S.3
-
53
-
-
0346460960
-
Paucity of genes on the Drosophila X chromosome showing male-biased expression
-
DOI 10.1126/science.1079190
-
Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B. 2003. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 299:697-700. (Pubitemid 36159482)
-
(2003)
Science
, vol.299
, Issue.5607
, pp. 697-700
-
-
Parisi, M.1
Nuttall, R.2
Naiman, D.3
Bouffard, G.4
Malley, J.5
Andrews, J.6
Eastman, S.7
Oliver, B.8
-
54
-
-
33748675254
-
An RNA gene expressed during cortical development evolved rapidly in humans
-
DOI 10.1038/nature05113, PII NATURE05113
-
Pollard KS, Salama SR, Lambert N, et al. (16 co-authors). 2006. An RNA gene expressed during cortical development evolved rapidly in humans. Nature 443:167-172. (Pubitemid 44387600)
-
(2006)
Nature
, vol.443
, Issue.7108
, pp. 167-172
-
-
Pollard, K.S.1
Salama, S.R.2
Lambert, N.3
Lambot, M.-A.4
Coppens, S.5
Pedersen, J.S.6
Katzman, S.7
King, B.8
Onodera, C.9
Siepel, A.10
Kern, A.D.11
Dehay, C.12
Igel, H.13
Ares Jr., M.14
Vanderhaeghen, P.15
Haussler, D.16
-
55
-
-
60149099385
-
Evolution and functions of long noncoding RNAs
-
Ponting CP, Oliver PL, Reik W. 2009. Evolution and functions of long noncoding RNAs. Cell 136:629-641.
-
(2009)
Cell
, vol.136
, pp. 629-641
-
-
Ponting, C.P.1
Oliver, P.L.2
Reik, W.3
-
56
-
-
33846169089
-
Eukaryotic regulatory RNAs: An answer to the 'genome complexity' conundrum
-
DOI 10.1101/gad.1484207
-
Prasanth KV, Spector DL. 2007. Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes Dev. 21:11-42. (Pubitemid 46089704)
-
(2007)
Genes and Development
, vol.21
, Issue.1
, pp. 11-42
-
-
Prasanth, K.V.1
Spector, D.L.2
-
57
-
-
0035413670
-
Male sterility associated with overexpression of the noncoding hsr ω gene in cyst cells of testis of Drosophila melanogaster
-
Rajendra TK, Prasanth KV, Lakhotia SC. 2001. Male sterility associated with overexpression of the noncoding hsromega gene in cyst cells of testis of Drosophila melanogaster. J Genet. 80:97-110. (Pubitemid 33572483)
-
(2001)
Journal of Genetics
, vol.80
, Issue.2
, pp. 97-110
-
-
Rajendra, T.K.1
Prasanth, K.V.2
Lakhotia, S.C.3
-
58
-
-
0037504137
-
Sex-dependent gene expression and evolution of the Drosophila transcriptome
-
DOI 10.1126/science.1085881
-
Ranz JM, Castillo-Davis CI, Meiklejohn CD, Hartl DL. 2003. Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 300:1742-1745. (Pubitemid 36712569)
-
(2003)
Science
, vol.300
, Issue.5626
, pp. 1742-1745
-
-
Ranz, J.M.1
Castillo-Davis, C.I.2
Meiklejohn, C.D.3
Hartl, D.L.4
-
59
-
-
33947359039
-
The coding/non-coding overlapping architecture of the gene encoding the Drosophila pseudouridine synthase
-
Riccardo S, Tortoriello G, Giordano E, Turano M, Furia M. 2007. The coding/non-coding overlapping architecture of the gene encoding the Drosophila pseudouridine synthase. BMC Mol Biol. 8:15.
-
(2007)
BMC Mol Biol
, vol.8
, pp. 15
-
-
Riccardo, S.1
Tortoriello, G.2
Giordano, E.3
Turano, M.4
Furia, M.5
-
60
-
-
19944434180
-
Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene and cis-element evolution
-
52 co-authors
-
Richards S, Liu Y, Bettencourt BR, et al. (52 co-authors). 2005. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene and cis-element evolution. Genome Res. 15:1-18.
-
(2005)
Genome Res
, vol.15
, pp. 1-18
-
-
Richards, S.1
Liu, Y.2
Bettencourt, B.R.3
-
62
-
-
33644514069
-
Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax
-
Sanchez-Elsner T, Gou D, Kremmer E, Sauer F. 2006. Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax. Science 311:1118-1123.
-
(2006)
Science
, vol.311
, pp. 1118-1123
-
-
Sanchez-Elsner, T.1
Gou, D.2
Kremmer, E.3
Sauer, F.4
-
63
-
-
7444233156
-
A gene expression map for the euchromatic genome of Drosophila melanogaster
-
DOI 10.1126/science.1101312
-
Stolc V, Gauhar Z, Mason C, et al. (12 co-authors). 2004. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science 306:655-660. (Pubitemid 39440907)
-
(2004)
Science
, vol.306
, Issue.5696
, pp. 655-660
-
-
Stolc, V.1
Gauhar, Z.2
Mason, C.3
Halasz, G.4
Van Batenburg, M.F.5
Rifkin, S.A.6
Hua, S.7
Herreman, T.8
Tongprasit, W.9
Barbano, P.E.10
Bussemaker, H.J.11
White, K.P.12
-
65
-
-
0042208405
-
Functional redundancy within roX1, a noncoding RNA involved in dosage compensation in Drosophila melanogaster
-
Stuckenholz C, Meller VH, Kuroda MI. 2003. Functional redundancy within roX1, a noncoding RNA involved in dosage compensation in Drosophila melanogaster. Genetics 164:1003-1014. (Pubitemid 36935676)
-
(2003)
Genetics
, vol.164
, Issue.3
, pp. 1003-1014
-
-
Stuckenholz, C.1
Meller, V.H.2
Kuroda, M.I.3
-
66
-
-
36049039511
-
Demasculinization of X chromosomes in the Drosophila genus
-
DOI 10.1038/nature06330, PII NATURE06330
-
Sturgill D, Zhang Y, Parisi M, Oliver B. 2007. Demasculinization of X chromosomes in the Drosophila genus. Nature 450:238-241. (Pubitemid 350100550)
-
(2007)
Nature
, vol.450
, Issue.7167
, pp. 238-241
-
-
Sturgill, D.1
Zhang, Y.2
Parisi, M.3
Oliver, B.4
-
67
-
-
47649124124
-
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
-
16 co-authors
-
Sultan M, Schulz MH, Richard H, et al. (16 co-authors). 2008. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321:956-960.
-
(2008)
Science
, vol.321
, pp. 956-960
-
-
Sultan, M.1
Schulz, M.H.2
Richard, H.3
-
68
-
-
85047700164
-
The rapid evolution of reproductive proteins
-
DOI 10.1038/nrg733
-
Swanson WJ, Vacquier VD. 2002. The rapid evolution of reproductive proteins. Nat Rev Genet. 3:137-144. (Pubitemid 34506597)
-
(2002)
Nature Reviews Genetics
, vol.3
, Issue.2
, pp. 137-144
-
-
Swanson, W.J.1
Vacquier, V.D.2
-
69
-
-
33847698971
-
The relationship between non-protein-coding DNA and eukaryotic complexity
-
DOI 10.1002/bies.20544
-
Taft RJ, Pheasant M, Mattick JS. 2007. The relationship between non-protein-coding DNA and eukaryotic complexity. Bioessays 29:288-299. (Pubitemid 46384167)
-
(2007)
BioEssays
, vol.29
, Issue.3
, pp. 288-299
-
-
Taft, R.J.1
Pheasant, M.2
Mattick, J.S.3
-
70
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
71
-
-
17244364714
-
Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster
-
DOI 10.1073/pnas.0501422102
-
Tupy JL, Bailey AM, Dailey G, Evans-Holm M, Siebel CW, Misra S, Celniker SE, Rubin GM. 2005. Identification of putative noncoding polyadenylated transcripts in Drosophila melanogast-er. Proc Natl Acad Sci USA. 102:5495-5500. (Pubitemid 40530286)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.15
, pp. 5495-5500
-
-
Tupy, J.L.1
Bailey, A.M.2
Dailey, G.3
Evans-Holm, M.4
Siebel, C.W.5
Misra, S.6
Celniker, S.E.7
Rubin, G.M.8
-
72
-
-
0003243515
-
Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives
-
Wang RL, Wakeley J, Hey J. 1997. Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. Genetics 147:1091-1106. (Pubitemid 27467453)
-
(1997)
Genetics
, vol.147
, Issue.3
, pp. 1091-1106
-
-
Wang, R.L.1
Wakeley, J.2
Hey, J.3
-
73
-
-
67649671961
-
Long noncoding RNAs: Functional surprises from the RNA world
-
Wilusz JE, Sunwoo H, Spector DL. 2009. Long noncoding RNAs: functional surprises from the RNA world. Genes Dev. 23: 1494-1504.
-
(2009)
Genes Dev
, vol.23
, pp. 1494-1504
-
-
Wilusz, J.E.1
Sunwoo, H.2
Spector, D.L.3
-
74
-
-
34247347828
-
Significant divergence of sex-related non-coding RNA expression patterns among closely related species in Drosophila
-
DOI 10.1007/s11434-007-0146-8
-
Yang YF, Li Z, Fan QC, Long MY, Zhang WX. 2007. Significant divergence of sex-related non-coding RNA expression patterns among closely related species in Drosophila. Chi Sci Bull. 52: 748-754. (Pubitemid 46639459)
-
(2007)
Chinese Science Bulletin
, vol.52
, Issue.6
, pp. 748-754
-
-
Yang, Y.1
Li, Z.2
Fan, Q.3
Long, M.4
Zhang, W.5
-
75
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 1997. PAML: a program package for phylogenetic analyses by maximum likelihood. CABIOS 13:555-556. (Pubitemid 27480216)
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.5
, pp. 555-556
-
-
Yang, Z.1
|