메뉴 건너뛰기




Volumn 5, Issue , 2011, Pages

Convergence of Logic of Cellular Regulation in Different Premalignant Cells by an Information Theoretic Approach

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN P53; RAS PROTEIN;

EID: 79952605047     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-5-42     Document Type: Article
Times cited : (26)

References (38)
  • 2
    • 4043181214 scopus 로고    scopus 로고
    • Cancer genes and the pathways they control
    • 10.1038/nm1087, 15286780
    • Vogelstein B, Kinzler KW. Cancer genes and the pathways they control. Nat Med 2004, 10(8):789-799. 10.1038/nm1087, 15286780.
    • (2004) Nat Med , vol.10 , Issue.8 , pp. 789-799
    • Vogelstein, B.1    Kinzler, K.W.2
  • 3
    • 0034614637 scopus 로고    scopus 로고
    • The Hallmarks of Cancer
    • 10.1016/S0092-8674(00)81683-9, 10647931
    • Hanahan D, Weinberg RA. The Hallmarks of Cancer. Cell 2000, 100:57-70. 10.1016/S0092-8674(00)81683-9, 10647931.
    • (2000) Cell , vol.100 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 4
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • 10.1073/pnas.97.18.10101, 27718, 10963673
    • Alter O, Brown PO, Botstein D. Singular value decomposition for genome-wide expression data processing and modeling. PNAS 2000, 97:10101-10106. 10.1073/pnas.97.18.10101, 27718, 10963673.
    • (2000) PNAS , vol.97 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Botstein, D.3
  • 5
    • 34547683965 scopus 로고    scopus 로고
    • Genomic Signal Processing: From Matrix Algebra to Genetic Networks
    • Totowa: Humana Press, Korenberg MJ
    • Alter O. Genomic Signal Processing: From Matrix Algebra to Genetic Networks. Microarray Data Analysis: Methods and Applications 2007, 17-59. Totowa: Humana Press, Korenberg MJ.
    • (2007) Microarray Data Analysis: Methods and Applications , pp. 17-59
    • Alter, O.1
  • 6
    • 73149099424 scopus 로고    scopus 로고
    • Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression
    • 10.1038/msb.2009.70, 2779084, 19888207
    • Omberg L, Meyerson JR, Kobayashi K, Drury LS, Diffley JFX, Alter O. Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression. Molecular Systems Biology 2009, 5:312. 10.1038/msb.2009.70, 2779084, 19888207.
    • (2009) Molecular Systems Biology , vol.5 , pp. 312
    • Omberg, L.1    Meyerson, J.R.2    Kobayashi, K.3    Drury, L.S.4    Diffley, J.F.X.5    Alter, O.6
  • 7
    • 28844441230 scopus 로고    scopus 로고
    • A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis
    • 10.1126/science.1116598, 16339439
    • Janes KA, Albeck JG, Gaudet S, Sorger PK, Lauffenburger DA, Yaffe MB. A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis. Science 2005, 310(5754):1646-1653. 10.1126/science.1116598, 16339439.
    • (2005) Science , vol.310 , Issue.5754 , pp. 1646-1653
    • Janes, K.A.1    Albeck, J.G.2    Gaudet, S.3    Sorger, P.K.4    Lauffenburger, D.A.5    Yaffe, M.B.6
  • 8
    • 32044471825 scopus 로고    scopus 로고
    • A biological approach to computational models of proteomic networks
    • 10.1016/j.cbpa.2005.12.016, 16406679
    • Janes KA, Lauffenburger DA. A biological approach to computational models of proteomic networks. Curr Opin Chem Biol 2006, 10(1):73-80. 10.1016/j.cbpa.2005.12.016, 16406679.
    • (2006) Curr Opin Chem Biol , vol.10 , Issue.1 , pp. 73-80
    • Janes, K.A.1    Lauffenburger, D.A.2
  • 9
    • 33750351769 scopus 로고    scopus 로고
    • Data-driven modelling of signal-transduction networks
    • 10.1038/nrm2041, 17057752
    • Janes KA, Yaffe MB. Data-driven modelling of signal-transduction networks. Nat Rev Mol Cell Biol 2006, 7(11):820-828. 10.1038/nrm2041, 17057752.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , Issue.11 , pp. 820-828
    • Janes, K.A.1    Yaffe, M.B.2
  • 10
    • 33746922381 scopus 로고    scopus 로고
    • The promoters of human cell cycle genes integrate signals from two tumor suppressive pathways during cellular transformation
    • 2005 0022, 10.1038/msb4100030, 1681464, 16729057
    • Tabach Y, Milyavsky M, Shats I, Brosh R, Zuk O, Yitzhaky A, Mantovani R, Domany E, Rotter V, Pilpel Y. The promoters of human cell cycle genes integrate signals from two tumor suppressive pathways during cellular transformation. Mol Syst Biol 2005, 1. 2005 0022, 10.1038/msb4100030, 1681464, 16729057.
    • (2005) Mol Syst Biol , vol.1
    • Tabach, Y.1    Milyavsky, M.2    Shats, I.3    Brosh, R.4    Zuk, O.5    Yitzhaky, A.6    Mantovani, R.7    Domany, E.8    Rotter, V.9    Pilpel, Y.10
  • 11
    • 35548985891 scopus 로고    scopus 로고
    • Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns
    • 10.1073/pnas.0609152103, 1748172, 17138668
    • Lezon TR, Banavar JR, Cieplak M, Maritan A, Fedoroff NV. Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns. Proc Natl Acad Sci USA 2006, 103(50):19033-19038. 10.1073/pnas.0609152103, 1748172, 17138668.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.50 , pp. 19033-19038
    • Lezon, T.R.1    Banavar, J.R.2    Cieplak, M.3    Maritan, A.4    Fedoroff, N.V.5
  • 12
    • 33646170322 scopus 로고    scopus 로고
    • Weak pairwise correlations imply strongly correlated network states in a neural population
    • 10.1038/nature04701, 1785327, 16625187
    • Schneidman E, Berry MJ, Segev R, Bialek W. Weak pairwise correlations imply strongly correlated network states in a neural population. Nature 2006, 440(7087):1007-1012. 10.1038/nature04701, 1785327, 16625187.
    • (2006) Nature , vol.440 , Issue.7087 , pp. 1007-1012
    • Schneidman, E.1    Berry, M.J.2    Segev, R.3    Bialek, W.4
  • 14
    • 71549141289 scopus 로고    scopus 로고
    • Deterministic and stochastic models of genetic regulatory networks
    • full_text, 19897099
    • Shmulevich I, Aitchison JD. Deterministic and stochastic models of genetic regulatory networks. Methods in Enzymology 2009, 467:335-356. full_text, 19897099.
    • (2009) Methods in Enzymology , vol.467 , pp. 335-356
    • Shmulevich, I.1    Aitchison, J.D.2
  • 17
    • 17644412264 scopus 로고    scopus 로고
    • Bayesian Network Analysis of Signaling Netwworks: A Primer
    • Pe'er D. Bayesian Network Analysis of Signaling Netwworks: A Primer. Science STKE 2005, 281:p14.
    • (2005) Science STKE , vol.281
    • Pe'er, D.1
  • 18
    • 17644427718 scopus 로고    scopus 로고
    • Causal protein-signaling networks derived from multiparameter single-cell data
    • 10.1126/science.1105809, 15845847
    • Sachs K, Perez O, Pe'er D, Lauffenburger D, Nolan G. Causal protein-signaling networks derived from multiparameter single-cell data. Science 2005, 308:523-529. 10.1126/science.1105809, 15845847.
    • (2005) Science , vol.308 , pp. 523-529
    • Sachs, K.1    Perez, O.2    Pe'er, D.3    Lauffenburger, D.4    Nolan, G.5
  • 21
    • 21144456106 scopus 로고    scopus 로고
    • Transcriptional programs following genetic alterations in p53, INK4A, and H-Ras genes along defined stages of malignant transformation
    • 10.1158/0008-5472.CAN-04-3880, 15930270
    • Milyavsky M, Tabach Y, Shats I, Erez N, Cohen Y, Tang X, Kalis M, Kogan I, Buganim Y, Goldfinger N, et al. Transcriptional programs following genetic alterations in p53, INK4A, and H-Ras genes along defined stages of malignant transformation. Cancer Res 2005, 65(11):4530-4543. 10.1158/0008-5472.CAN-04-3880, 15930270.
    • (2005) Cancer Res , vol.65 , Issue.11 , pp. 4530-4543
    • Milyavsky, M.1    Tabach, Y.2    Shats, I.3    Erez, N.4    Cohen, Y.5    Tang, X.6    Kalis, M.7    Kogan, I.8    Buganim, Y.9    Goldfinger, N.10
  • 22
    • 66449127909 scopus 로고    scopus 로고
    • Shift from Apoptotic to Necrotic Cell Death during Human Papillomavirus-induced Transformation of Keratinocytes
    • 10.1074/jbc.M900217200, 2670175, 19221178
    • Kravchenko-Balasha N, Mizrachy-Schwartz S, Klein S, Levitzki A. Shift from Apoptotic to Necrotic Cell Death during Human Papillomavirus-induced Transformation of Keratinocytes. Journal of Biological Chemistry 2009, 284(17):11717-11727. 10.1074/jbc.M900217200, 2670175, 19221178.
    • (2009) Journal of Biological Chemistry , vol.284 , Issue.17 , pp. 11717-11727
    • Kravchenko-Balasha, N.1    Mizrachy-Schwartz, S.2    Klein, S.3    Levitzki, A.4
  • 23
    • 77953454551 scopus 로고    scopus 로고
    • Information-theoretic analysis of phenotype changes in early stages of carcinogenesis
    • 10.1073/pnas.1005283107, 2890488, 20479229
    • Remacle F, Kravchenko-Balasha N, Levitzki A, Levine RD. Information-theoretic analysis of phenotype changes in early stages of carcinogenesis. Proc Natl Acad Sci USA 2010, 107(22):10324-10329. 10.1073/pnas.1005283107, 2890488, 20479229.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.22 , pp. 10324-10329
    • Remacle, F.1    Kravchenko-Balasha, N.2    Levitzki, A.3    Levine, R.D.4
  • 25
    • 0002631773 scopus 로고
    • Information Theory Approach to Molecular Reaction Dynamics
    • Levine RD. Information Theory Approach to Molecular Reaction Dynamics. Ann Rev Phys Chem 1978, 29:59.
    • (1978) Ann Rev Phys Chem , vol.29 , pp. 59
    • Levine, R.D.1
  • 26
    • 0002429585 scopus 로고
    • Information Theoretical Approach to Inversion Problems
    • Levine RD. Information Theoretical Approach to Inversion Problems. Journal of Physics a-Mathematical and General 1980, 13(1):91-108.
    • (1980) Journal of Physics a-Mathematical and General , vol.13 , Issue.1 , pp. 91-108
    • Levine, R.D.1
  • 28
    • 33847598921 scopus 로고
    • Energy Disposal and Energy Consumption in Elementary Chemical-Reactions - Information Theoretic Approach
    • Levine RD, Bernstein RB. Energy Disposal and Energy Consumption in Elementary Chemical-Reactions - Information Theoretic Approach. Acc Chem Res 1974, 7:393-400.
    • (1974) Acc Chem Res , vol.7 , pp. 393-400
    • Levine, R.D.1    Bernstein, R.B.2
  • 30
    • 0344319833 scopus 로고    scopus 로고
    • Identifying biological themes within lists of genes with EASE
    • 10.1186/gb-2003-4-10-r70, 328459, 14519205
    • Hosack DA, Dennis G, Sherman BT, Lane HC, Lempicki RA. Identifying biological themes within lists of genes with EASE. Genome Biol 2003, 4(10):R70. 10.1186/gb-2003-4-10-r70, 328459, 14519205.
    • (2003) Genome Biol , vol.4 , Issue.10
    • Hosack, D.A.1    Dennis, G.2    Sherman, B.T.3    Lane, H.C.4    Lempicki, R.A.5
  • 31
    • 67649697143 scopus 로고    scopus 로고
    • Optimization of energy-consuming pathways towards rapid growth in HPV-transformed cells
    • 10.1371/journal.pone.0000628, 1913554, 17622357
    • Mizrachy-Schwartz S, Kravchenko-Balasha N, Ben-Bassat H, Klein S, Levitzki A. Optimization of energy-consuming pathways towards rapid growth in HPV-transformed cells. PLoS One 2007, 2(7):e628. 10.1371/journal.pone.0000628, 1913554, 17622357.
    • (2007) PLoS One , vol.2 , Issue.7
    • Mizrachy-Schwartz, S.1    Kravchenko-Balasha, N.2    Ben-Bassat, H.3    Klein, S.4    Levitzki, A.5
  • 32
    • 0034628517 scopus 로고    scopus 로고
    • H-, K- and N-Ras inhibit myeloid leukemia cell proliferation by a p21WAF1-dependent mechanism
    • 10.1038/sj.onc.1203384, 10698496
    • Delgado MD, Vaque JP, Arozarena I, Lopez-Ilasaca MA, Martinez C, Crespo P, Leon J. H-, K- and N-Ras inhibit myeloid leukemia cell proliferation by a p21WAF1-dependent mechanism. Oncogene 2000, 19(6):783-790. 10.1038/sj.onc.1203384, 10698496.
    • (2000) Oncogene , vol.19 , Issue.6 , pp. 783-790
    • Delgado, M.D.1    Vaque, J.P.2    Arozarena, I.3    Lopez-Ilasaca, M.A.4    Martinez, C.5    Crespo, P.6    Leon, J.7
  • 33
    • 0034671847 scopus 로고    scopus 로고
    • The p38 pathway provides negative feedback for Ras proliferative signaling
    • 10.1074/jbc.M002856200, 10978313
    • Chen G, Hitomi M, Han J, Stacey DW. The p38 pathway provides negative feedback for Ras proliferative signaling. J Biol Chem 2000, 275(50):38973-38980. 10.1074/jbc.M002856200, 10978313.
    • (2000) J Biol Chem , vol.275 , Issue.50 , pp. 38973-38980
    • Chen, G.1    Hitomi, M.2    Han, J.3    Stacey, D.W.4
  • 34
    • 67549131188 scopus 로고    scopus 로고
    • Energy homeostasis and cancer prevention: the AMP-activated protein kinase
    • Fay JR, Steele V, Crowell JA. Energy homeostasis and cancer prevention: the AMP-activated protein kinase. Cancer Prev Res (Phila Pa) 2009, 2(4):301-309.
    • (2009) Cancer Prev Res (Phila Pa) , vol.2 , Issue.4 , pp. 301-309
    • Fay, J.R.1    Steele, V.2    Crowell, J.A.3
  • 36
    • 0036717195 scopus 로고    scopus 로고
    • Nf-kappa B, chemokine gene transcription and tumour growth
    • 10.1038/nri887, 2668257, 12209135
    • Richmond A. Nf-kappa B, chemokine gene transcription and tumour growth. Nat Rev Immunol 2002, 2(9):664-674. 10.1038/nri887, 2668257, 12209135.
    • (2002) Nat Rev Immunol , vol.2 , Issue.9 , pp. 664-674
    • Richmond, A.1
  • 37
    • 2142815184 scopus 로고    scopus 로고
    • Sensitivity and specificity amplification in signal transduction
    • 10.1385/CBB:39:1:45, 12835528
    • Li G, Qian H. Sensitivity and specificity amplification in signal transduction. Cell Biochem Biophys 2003, 39(1):45-59. 10.1385/CBB:39:1:45, 12835528.
    • (2003) Cell Biochem Biophys , vol.39 , Issue.1 , pp. 45-59
    • Li, G.1    Qian, H.2
  • 38
    • 0035958062 scopus 로고    scopus 로고
    • Akt/PKB Activity Is Required for Ha-Ras-mediated Transformation of Intensinal Epithelial Cells
    • Sheng H, Shaoi J, N DR. Akt/PKB Activity Is Required for Ha-Ras-mediated Transformation of Intensinal Epithelial Cells. JBC 2001, 276:14498-14504.
    • (2001) JBC , vol.276 , pp. 14498-14504
    • Sheng, H.1    Shaoi, J.2    N, D.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.