-
1
-
-
0029670970
-
Signal sensing by σ54-dependent regulators: Derepression as a control mechanism
-
Shingler V, (1996) Signal sensing by σ54-dependent regulators: derepression as a control mechanism. Mol Microbiol 19: 409-416.
-
(1996)
Mol Microbiol
, vol.19
, pp. 409-416
-
-
Shingler, V.1
-
2
-
-
4544275675
-
Bacterial transcriptional regulators for degradation pathways of aromatic compounds
-
Tropel D, van der Meer JR, (2004) Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol Mol Biol Rev 68: 474-500.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 474-500
-
-
Tropel, D.1
van der Meer, J.R.2
-
3
-
-
0030860391
-
Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid- encoded regulators
-
Ramos JL, Marques S, Timmis KN, (1997) Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid- encoded regulators. Annu Rev Microbiol 51: 341-373.
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 341-373
-
-
Ramos, J.L.1
Marques, S.2
Timmis, K.N.3
-
4
-
-
0028325759
-
Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600
-
Shingler V, Moore T, (1994) Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600. J Bacteriol 176: 1555-1560.
-
(1994)
J Bacteriol
, vol.176
, pp. 1555-1560
-
-
Shingler, V.1
Moore, T.2
-
5
-
-
0034981053
-
New insights into the activation of o-xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substrates
-
Arenghi FL, Barbieri P, Bertoni G, de Lorenzo V, (2001) New insights into the activation of o-xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substrates. EMBO Rep 2: 409-414.
-
(2001)
EMBO Rep
, vol.2
, pp. 409-414
-
-
Arenghi, F.L.1
Barbieri, P.2
Bertoni, G.3
de Lorenzo, V.4
-
6
-
-
0032900505
-
The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism
-
Laurie AD, Lloyd-Jones G, (1999) The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism. J Bacteriol 181: 531-540.
-
(1999)
J Bacteriol
, vol.181
, pp. 531-540
-
-
Laurie, A.D.1
Lloyd-Jones, G.2
-
7
-
-
0033986392
-
HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1
-
Jaspers MC, Suske WA, Schmid A, Goslings DA, Kohler HP, et al. (2000) HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1. J Bacteriol 182: 405-417.
-
(2000)
J Bacteriol
, vol.182
, pp. 405-417
-
-
Jaspers, M.C.1
Suske, W.A.2
Schmid, A.3
Goslings, D.A.4
Kohler, H.P.5
-
8
-
-
0030832088
-
Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT
-
Leahy JG, Johnson GR, Olsen RH, (1997) Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT. Appl Environ Microbiol 63: 3736-3739.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3736-3739
-
-
Leahy, J.G.1
Johnson, G.R.2
Olsen, R.H.3
-
9
-
-
0041381398
-
Deciphering environmental signal integration in σ54-dependent promoters with a simple mathematical model
-
Van Dien SJ, de Lorenzo V, (2003) Deciphering environmental signal integration in σ54-dependent promoters with a simple mathematical model. J Theor Biol 224: 437-449.
-
(2003)
J Theor Biol
, vol.224
, pp. 437-449
-
-
Van Dien, S.J.1
de Lorenzo, V.2
-
10
-
-
0030602821
-
ATP binding to the σ54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA
-
Pérez-Martín J, de Lorenzo V, (1996) ATP binding to the σ54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA. Cell 86: 331-339.
-
(1996)
Cell
, vol.86
, pp. 331-339
-
-
Pérez-Martín, J.1
de Lorenzo, V.2
-
11
-
-
0032969563
-
AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
-
Neuwald AF, Aravind L, Spouge JL, Koonin EV, (1999) AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 9: 27-43.
-
(1999)
Genome Res
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
12
-
-
0036091576
-
Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters
-
Tropel D, van der Meer JR, (2002) Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters. J Bacteriol 184: 2914-2924.
-
(2002)
J Bacteriol
, vol.184
, pp. 2914-2924
-
-
Tropel, D.1
van der Meer, J.R.2
-
13
-
-
0035542726
-
A la carte transcriptional regulators: Unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors
-
Garmendia J, Devos D, Valencia A, de Lorenzo V, (2001) A la carte transcriptional regulators: unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors. Mol Microbiol 42: 47-59.
-
(2001)
Mol Microbiol
, vol.42
, pp. 47-59
-
-
Garmendia, J.1
Devos, D.2
Valencia, A.3
de Lorenzo, V.4
-
14
-
-
0033753298
-
The role of the interdomain B linker in the activation of the XylR protein of Pseudomonas putida
-
Garmendia J, de Lorenzo V, (2000) The role of the interdomain B linker in the activation of the XylR protein of Pseudomonas putida. Mol Microbiol 38: 401-410.
-
(2000)
Mol Microbiol
, vol.38
, pp. 401-410
-
-
Garmendia, J.1
de Lorenzo, V.2
-
15
-
-
0029063837
-
Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains
-
Fernández S, de Lorenzo V, Pérez-Martin J, (1995) Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains. Mol Microbiol 16: 205-213.
-
(1995)
Mol Microbiol
, vol.16
, pp. 205-213
-
-
Fernández, S.1
de Lorenzo, V.2
Pérez-Martin, J.3
-
16
-
-
0038566311
-
Genetic evidence for interdomain regulation of the phenol-responsive σ54-dependent activator DmpR
-
Ng LC, O'Neill E, Shingler V, (1996) Genetic evidence for interdomain regulation of the phenol-responsive σ54-dependent activator DmpR. J Biol Chem 271: 17281-17286.
-
(1996)
J Biol Chem
, vol.271
, pp. 17281-17286
-
-
Ng, L.C.1
O'Neill, E.2
Shingler, V.3
-
17
-
-
17144380831
-
Characterization of HbpR binding by site-directed mutagenesis of its DNA-binding site and by deletion of the effector domain
-
Tropel D, van der Meer JR, (2005) Characterization of HbpR binding by site-directed mutagenesis of its DNA-binding site and by deletion of the effector domain. FEBS J 272: 1756-1766.
-
(2005)
FEBS J
, vol.272
, pp. 1756-1766
-
-
Tropel, D.1
van der Meer, J.R.2
-
18
-
-
0027938931
-
An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols
-
Pavel H, Forsman M, Shingler V, (1994) An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols. J Bacteriol 176: 7550-7557.
-
(1994)
J Bacteriol
, vol.176
, pp. 7550-7557
-
-
Pavel, H.1
Forsman, M.2
Shingler, V.3
-
19
-
-
34547689731
-
Emergence of novel functions in transcriptional regulators by regression to stem protein types
-
Galvao TC, Mencia M, de Lorenzo V, (2007) Emergence of novel functions in transcriptional regulators by regression to stem protein types. Mol Microbiol 65: 907-919.
-
(2007)
Mol Microbiol
, vol.65
, pp. 907-919
-
-
Galvao, T.C.1
Mencia, M.2
de Lorenzo, V.3
-
20
-
-
0034087222
-
Identification of an effector specificity subregion within the aromatic-responsive regulators DmpR and XylR by DNA shuffling
-
Skarfstad E, O'Neill E, Garmendia J, Shingler V, (2000) Identification of an effector specificity subregion within the aromatic-responsive regulators DmpR and XylR by DNA shuffling. J Bacteriol 182: 3008-3016.
-
(2000)
J Bacteriol
, vol.182
, pp. 3008-3016
-
-
Skarfstad, E.1
O'Neill, E.2
Garmendia, J.3
Shingler, V.4
-
21
-
-
0031910797
-
Modulation of the function of the signal receptor domain of XylR, a member of a family of prokaryotic enhancer-like positive regulators
-
Salto R, Delgado A, Michan C, Marques S, Ramos JL, (1998) Modulation of the function of the signal receptor domain of XylR, a member of a family of prokaryotic enhancer-like positive regulators. J Bacteriol 180: 600-604.
-
(1998)
J Bacteriol
, vol.180
, pp. 600-604
-
-
Salto, R.1
Delgado, A.2
Michan, C.3
Marques, S.4
Ramos, J.L.5
-
22
-
-
0036009684
-
Deciphering the action of aromatic effectors on the prokaryotic enhancer-binding protein XylR: A structural model of its N-terminal domain
-
Devos D, Garmendia J, de Lorenzo V, Valencia A, (2002) Deciphering the action of aromatic effectors on the prokaryotic enhancer-binding protein XylR: a structural model of its N-terminal domain. Environ Microbiol 4: 29-41.
-
(2002)
Environ Microbiol
, vol.4
, pp. 29-41
-
-
Devos, D.1
Garmendia, J.2
de Lorenzo, V.3
Valencia, A.4
-
23
-
-
0033754121
-
Visualization of DNA-protein intermediates during activation of the Pu promoter of the TOL plasmid of Pseudomonas putida
-
Garmendia J, de Lorenzo V, (2000) Visualization of DNA-protein intermediates during activation of the Pu promoter of the TOL plasmid of Pseudomonas putida. Microbiology 146: 2555-2563.
-
(2000)
Microbiology
, vol.146
, pp. 2555-2563
-
-
Garmendia, J.1
de Lorenzo, V.2
-
24
-
-
0035185541
-
Transcriptional organization and dynamic expression of the hbpCAD genes, which encode the first three enzymes for 2-hydroxybiphenyl degradation in Pseudomonas azelaica HBP1
-
Jaspers MC, Schmid A, Sturme MH, Goslings DA, Kohler HP, et al. (2001) Transcriptional organization and dynamic expression of the hbpCAD genes, which encode the first three enzymes for 2-hydroxybiphenyl degradation in Pseudomonas azelaica HBP1. J Bacteriol 183: 270-279.
-
(2001)
J Bacteriol
, vol.183
, pp. 270-279
-
-
Jaspers, M.C.1
Schmid, A.2
Sturme, M.H.3
Goslings, D.A.4
Kohler, H.P.5
-
25
-
-
6944237342
-
Design of new promoters and of a dual-bioreporter based on cross-activation by the two regulatory proteins XylR and HbpR
-
Tropel D, Bähler A, Globig K, van der Meer JR, (2004) Design of new promoters and of a dual-bioreporter based on cross-activation by the two regulatory proteins XylR and HbpR. Environ Microbiol 6: 1186-1196.
-
(2004)
Environ Microbiol
, vol.6
, pp. 1186-1196
-
-
Tropel, D.1
Bähler, A.2
Globig, K.3
van der Meer, J.R.4
-
26
-
-
32144432437
-
The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling
-
Arnold K, Bordoli L, Kopp J, Schwede T, (2006) The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
27
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server Nucl Acids Res
-
Schwede T, Kopp J, Guex N, Peitsch MC, (2003) SWISS-MODEL: an automated protein homology-modeling server Nucl Acids Res 31: 3381-3385.
-
(2003)
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
28
-
-
33747840389
-
GRAMM-X public web server for protein-protein docking
-
Tovchigrechko A, Vakser IA, (2006) GRAMM-X public web server for protein-protein docking. Nucl Acids Res 34: W310-314.
-
(2006)
Nucl Acids Res
, vol.34
-
-
Tovchigrechko, A.1
Vakser, I.A.2
-
29
-
-
0028244041
-
Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators, by effector binding
-
Delgado A, Ramos JL, (1994) Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators, by effector binding. J Biol Chem 269: 8059-8062.
-
(1994)
J Biol Chem
, vol.269
, pp. 8059-8062
-
-
Delgado, A.1
Ramos, J.L.2
-
30
-
-
45849125844
-
Mutant transcription activator isolation via green fluorescent protein based flow cytometry and cell sorting
-
Beggah S, Vogne C, Zenaro E, van der Meer JR, (2008) Mutant transcription activator isolation via green fluorescent protein based flow cytometry and cell sorting. Microb Biotechnol 1: 68-78.
-
(2008)
Microb Biotechnol
, vol.1
, pp. 68-78
-
-
Beggah, S.1
Vogne, C.2
Zenaro, E.3
van der Meer, J.R.4
-
31
-
-
0035865287
-
An active role for a structured B-linker in effector control of the σ54-dependent regulator DmpR
-
O'Neill E, Wikstrom P, Shingler V, (2001) An active role for a structured B-linker in effector control of the σ54-dependent regulator DmpR. Embo J 20: 819-827.
-
(2001)
Embo J
, vol.20
, pp. 819-827
-
-
O'Neill, E.1
Wikstrom, P.2
Shingler, V.3
-
32
-
-
0031945812
-
Aromatic ligand binding and intramolecular signalling of the phenol-responsive σ54-dependent regulator DmpR
-
O'Neill E, Ng LC, Sze CC, Shingler V, (1998) Aromatic ligand binding and intramolecular signalling of the phenol-responsive σ54-dependent regulator DmpR. Mol Microbiol 28: 131-141.
-
(1998)
Mol Microbiol
, vol.28
, pp. 131-141
-
-
O'Neill, E.1
Ng, L.C.2
Sze, C.C.3
Shingler, V.4
-
33
-
-
0004136246
-
Molecular cloning: A laboratory manual
-
Cold Spring Harbor, Cold Spring Harbor Laboratory Press
-
Sambrook J, Russell DW, (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Cold Spring Harbor Laboratory Press.
-
(2001)
-
-
Sambrook, J.1
Russell, D.W.2
-
34
-
-
0034858376
-
Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of 'Pseudomonas azelaica' HBP1
-
Jaspers MCM, Sturme MH, van der Meer JR, (2001) Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of 'Pseudomonas azelaica' HBP1. Microbiology 147: 2183-2194.
-
(2001)
Microbiology
, vol.147
, pp. 2183-2194
-
-
Jaspers, M.C.M.1
Sturme, M.H.2
van der Meer, J.R.3
-
35
-
-
0034821240
-
Monitoring intracellular levels of XylR in Pseudomonas putida with a single-chain antibody specific for aromatic-responsive enhancer-binding proteins
-
Fraile S, Roncal F, Fernandez LA, de Lorenzo V, (2001) Monitoring intracellular levels of XylR in Pseudomonas putida with a single-chain antibody specific for aromatic-responsive enhancer-binding proteins. J Bacteriol 183: 5571-5579.
-
(2001)
J Bacteriol
, vol.183
, pp. 5571-5579
-
-
Fraile, S.1
Roncal, F.2
Fernandez, L.A.3
de Lorenzo, V.4
-
36
-
-
79951933331
-
Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins
-
doi: 10.1111/j.1462-2920.2010.02401.x
-
Zafra O, Fraile S, Gutiérrez C, Haro A, Paez-Espino AD, et al. (2010) Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins. Environ Microbiol doi:10.1111/j.1462-2920.2010.02401.x.
-
(2010)
Environ Microbiol
-
-
Zafra, O.1
Fraile, S.2
Gutiérrez, C.3
Haro, A.4
Paez-Espino, A.D.5
|