-
1
-
-
0026049422
-
Activation of the Pseudomonas TOL plasmid upper pathway operon
-
Abril, M.-A., Buck, M., and Ramos, J.L. (1991) Activation of the Pseudomonas TOL plasmid upper pathway operon. J Biol Chem 266: 15832-15838.
-
(1991)
J Biol Chem
, vol.266
, pp. 15832-15838
-
-
Abril, M.-A.1
Buck, M.2
Ramos, J.L.3
-
2
-
-
0035404556
-
Organization and regulation of meta cleavage pathway genes for toluene and o-xylene derivative degradation in Pseudomonas stutzeri OX1
-
Arenghi, F.L., Berlanda, D., Galli, E., Sello, G., and Barbieri, P. (2001) Organization and regulation of meta cleavage pathway genes for toluene and o-xylene derivative degradation in Pseudomonas stutzeri OX1. Appl Environ Microbiol 67: 3304-3308.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3304-3308
-
-
Arenghi, F.L.1
Berlanda, D.2
Galli, E.3
Sello, G.4
Barbieri, P.5
-
3
-
-
0027958569
-
The isolated catalytic domain of NIFA, a bacterial enhancer-binding protein, activates transcription in vitro: Activation is inhibited by NIFL
-
Berger, D.K., Narberhaus, F., and Kustu, S. (1994) The isolated catalytic domain of NIFA, a bacterial enhancer-binding protein, activates transcription in vitro: activation is inhibited by NIFL. Proc Natl Acad Sci USA 91: 103-107.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 103-107
-
-
Berger, D.K.1
Narberhaus, F.2
Kustu, S.3
-
4
-
-
0014674485
-
A complementation analysis of the restriction and modification of DNA in Escherichia coli
-
Boyer, H.W., and Roulland-Dussoix, D. (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41: 459-472.
-
(1969)
J Mol Biol
, vol.41
, pp. 459-472
-
-
Boyer, H.W.1
Roulland-Dussoix, D.2
-
5
-
-
0028038233
-
Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes
-
Fernandez, S., Shingler, V., and De Lorenzo, V. (1994) Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes. J Bacteriol 176: 5052-5058.
-
(1994)
J Bacteriol
, vol.176
, pp. 5052-5058
-
-
Fernandez, S.1
Shingler, V.2
De Lorenzo, V.3
-
6
-
-
0000527903
-
Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
-
Figurski, D.H., and Helinski, D.R. (1979) Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci USA 76: 1648-1652.
-
(1979)
Proc Natl Acad Sci USA
, vol.76
, pp. 1648-1652
-
-
Figurski, D.H.1
Helinski, D.R.2
-
7
-
-
0035542726
-
A la carte transcriptional regulators: Unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors
-
Garmendia, J., Devos, D., Valencia, A., and de Lorenzo, V. (2001) A la carte transcriptional regulators: unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors. Mol Microbiol 42: 47-59.
-
(2001)
Mol Microbiol
, vol.42
, pp. 47-59
-
-
Garmendia, J.1
Devos, D.2
Valencia, A.3
De Lorenzo, V.4
-
8
-
-
0004217184
-
-
Washington, DC, USA: American Society for Microbiology
-
Gerhardt, P., Murray, R.G.E., Costilow, R.N., Nester, E.W., Wood, W.A., Krieg, N.R., and Briggs Phillips, G., (eds). (1981 ) Manual of Methods for General Bacteriology. Washington, DC, USA: American Society for Microbiology.
-
(1981)
Manual of Methods for General Bacteriology
-
-
Gerhardt, P.1
Murray, R.G.E.2
Costilow, R.N.3
Nester, E.W.4
Wood, W.A.5
Krieg, N.R.6
Briggs Phillips, G.7
-
9
-
-
0001792389
-
Aerobic biodegradation of aromatic hydrocarbons by bacteria
-
Sigel, H., and Sigel, A. (eds). New York, USA: Marcel Dekker
-
Harayama, S., and Timmis, K.N. (1992) Aerobic biodegradation of aromatic hydrocarbons by bacteria. In Metal Ions in Biological Systems. Sigel, H., and Sigel, A. (eds). New York, USA: Marcel Dekker, pp. 99-156.
-
(1992)
Metal Ions in Biological Systems
, pp. 99-156
-
-
Harayama, S.1
Timmis, K.N.2
-
10
-
-
0025047590
-
Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
-
Herrero, M., de Lorenzo, V., and Timmis, K.N. (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172: 6557-6567.
-
(1990)
J Bacteriol
, vol.172
, pp. 6557-6567
-
-
Herrero, M.1
De Lorenzo, V.2
Timmis, K.N.3
-
11
-
-
0020520053
-
Molecular cloning of regulatory gene xylR and operator-promoter regions of the xylABC and xylDEGF operons of the TOL plasmid
-
Inouye, S., Nakazawa, A., and Nakazawa, T. (1983) Molecular cloning of regulatory gene xylR and operator-promoter regions of the xylABC and xylDEGF operons of the TOL plasmid. J Bacteriol 155: 1192-1199.
-
(1983)
J Bacteriol
, vol.155
, pp. 1192-1199
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
12
-
-
0025675633
-
Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid
-
Inouye, S., Gomada, M., Sangodkar, U.M.X., Nakazawa, A., and Nakazawa, T. (1990) Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid. J Mol Biol 216: 251-260.
-
(1990)
J Mol Biol
, vol.216
, pp. 251-260
-
-
Inouye, S.1
Gomada, M.2
Sangodkar, U.M.X.3
Nakazawa, A.4
Nakazawa, T.5
-
13
-
-
0033986392
-
HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1
-
Jaspers, M.C., Suske, W.A., Schmid, A., Goslings, D.A., Kohler, H.P., and van der Meer, U.R. (2000) HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1. J Bacteriol 182: 405-417.
-
(2000)
J Bacteriol
, vol.182
, pp. 405-417
-
-
Jaspers, M.C.1
Suske, W.A.2
Schmid, A.3
Goslings, D.A.4
Kohler, H.P.5
Van Der Meer, U.R.6
-
14
-
-
0034858376
-
Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of 'Pseudomonas azelaica' HBP1
-
Jaspers, M.C., Sturme, M., and van der Meer, J.R. (2001a) Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of 'Pseudomonas azelaica' HBP1. Microbiology 147: 2183-2194.
-
(2001)
Microbiology
, vol.147
, pp. 2183-2194
-
-
Jaspers, M.C.1
Sturme, M.2
Van Der Meer, J.R.3
-
15
-
-
0035185541
-
Transcriptional organization and dynamic expression of the hbpCAD genes, which encode the first three enzymes for 2-hydroxybiphenyl degradation in Pseudomonas azelaica HBP1
-
Jaspers, M.C., Schmid, A., Sturme, M.H., Goslings, D.A., Kohler, H.-P., and van der Meer, J.R. (2001b) Transcriptional organization and dynamic expression of the hbpCAD genes, which encode the first three enzymes for 2-hydroxybiphenyl degradation in Pseudomonas azelaica HBP1. J Bacteriol 183: 270-279.
-
(2001)
J Bacteriol
, vol.183
, pp. 270-279
-
-
Jaspers, M.C.1
Schmid, A.2
Sturme, M.H.3
Goslings, D.A.4
Kohler, H.-P.5
Van Der Meer, J.R.6
-
16
-
-
0036159504
-
Exposing culprit organic pollutants: A review
-
Keane, A., Phoenix, P., Ghoshal, S., and Lau, P.C. (2002) Exposing culprit organic pollutants: a review. J Microbiol Meth 49: 103-119.
-
(2002)
J Microbiol Meth
, vol.49
, pp. 103-119
-
-
Keane, A.1
Phoenix, P.2
Ghoshal, S.3
Lau, P.C.4
-
17
-
-
0024119620
-
Degradation of 2-hydroxybiphenyl and 2,2′-dihydroxybiphenyl by Pseudomonas sp. strain HBP1
-
Kohler, H.-P.E., Kohler-Staub, D., and Focht, D.D. (1988) Degradation of 2-hydroxybiphenyl and 2,2′-dihydroxybiphenyl by Pseudomonas sp. strain HBP1. Appl Environ Microbiol 54: 2683-2688.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 2683-2688
-
-
Kohler, H.-P.E.1
Kohler-Staub, D.2
Focht, D.D.3
-
18
-
-
0024720114
-
Involvement of Pseudomonas putida RpoN sigma factor in regulation of various metabolic functions
-
Kohler, T., Harayama, S., Ramos, J.L., and Timmis, K.N. (1989) Involvement of Pseudomonas putida RpoN sigma factor in regulation of various metabolic functions. J Bacteriol 171: 4326-4333.
-
(1989)
J Bacteriol
, vol.171
, pp. 4326-4333
-
-
Kohler, T.1
Harayama, S.2
Ramos, J.L.3
Timmis, K.N.4
-
19
-
-
0028896922
-
Site-specific deletions of chromosomally located DNA segments with the multimer resolution system of broad-host-range plasmid RP4
-
Kristensen, C.S., Eberl, L., Sanchez-Romero, J.M., Givskov, M., Molin, S., and de Lorenzo, V. (1995) Site-specific deletions of chromosomally located DNA segments with the multimer resolution system of broad-host-range plasmid RP4. J Bacteriol 177: 52-58.
-
(1995)
J Bacteriol
, vol.177
, pp. 52-58
-
-
Kristensen, C.S.1
Eberl, L.2
Sanchez-Romero, J.M.3
Givskov, M.4
Molin, S.5
De Lorenzo, V.6
-
20
-
-
0030832088
-
Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT
-
Leahy, J.G., Johnson, G.R., and Olsen, R.H. (1997) Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT. Appl Environ Microbiol 63: 3736-3739.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3736-3739
-
-
Leahy, J.G.1
Johnson, G.R.2
Olsen, R.H.3
-
21
-
-
0029881189
-
Regulatory noise in prokaryotic promoters: How bacteria learn to respond to novel environmental signals
-
de Lorenzo, V., and Perez-Martin, J. (1996) Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals. Mol Microbiol 19: 1177-1184.
-
(1996)
Mol Microbiol
, vol.19
, pp. 1177-1184
-
-
De Lorenzo, V.1
Perez-Martin, J.2
-
23
-
-
0027340543
-
54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
-
54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains. J Bacteriol 175: 6067-6074.
-
(1993)
J Bacteriol
, vol.175
, pp. 6067-6074
-
-
Morett, E.1
Segovia, L.2
-
24
-
-
0028944411
-
Aromatic effector activation of the NtrC-like transcriptional regulator PhhR limits the catabolic potential of the (methyl) phenol degradative pathway it controls
-
Ng, L.C., Poh, C.L., and Shingler, V. (1995) Aromatic effector activation of the NtrC-like transcriptional regulator PhhR limits the catabolic potential of the (methyl) phenol degradative pathway it controls. J Bacteriol 177: 1485-1490.
-
(1995)
J Bacteriol
, vol.177
, pp. 1485-1490
-
-
Ng, L.C.1
Poh, C.L.2
Shingler, V.3
-
26
-
-
0029865771
-
54-promoters of the TOL plasmid of Pseudomonas putida
-
54- promoters of the TOL plasmid of Pseudomonas putida. J Mol Biol 258: 562-574.
-
(1996)
J Mol Biol
, vol.258
, pp. 562-574
-
-
Pérez-Martín, J.1
De Lorenzo, V.2
-
27
-
-
0030860391
-
Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
-
Ramos, J.L., Marqués, S., and Timmis, K.N. (1997) Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Ann Rev Microbiol 51: 341-373.
-
(1997)
Ann Rev Microbiol
, vol.51
, pp. 341-373
-
-
Ramos, J.L.1
Marqués, S.2
Timmis, K.N.3
-
28
-
-
0031740749
-
Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase c/c element of Pseudomonas sp. strain B13
-
Ravatn, R., Studer, S., Zehnder, A.J.B., and van der Meer, J.R. (1998) Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase c/c element of Pseudomonas sp. strain B13. J Bacteriol 180: 5505-5514.
-
(1998)
J Bacteriol
, vol.180
, pp. 5505-5514
-
-
Ravatn, R.1
Studer, S.2
Zehnder, A.J.B.3
Van Der Meer, J.R.4
-
29
-
-
0031910797
-
Modulation of the function of the signal receptor domain of XylR, a member of a family of prokaryotic enhancer-like positive regulators
-
Salto, R., Delgado, A., Michan, C., Marqués, S., and Ramos, J.L. (1998) Modulation of the function of the signal receptor domain of XylR, a member of a family of prokaryotic enhancer-like positive regulators. J Bacteriol 180: 600-604.
-
(1998)
J Bacteriol
, vol.180
, pp. 600-604
-
-
Salto, R.1
Delgado, A.2
Michan, C.3
Marqués, S.4
Ramos, J.L.5
-
30
-
-
0004136246
-
-
Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd Edn. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Edn.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
31
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
Sanger, F., Nicklen, S., and Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467.
-
(1977)
Proc Natl Acad Sci USA
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
32
-
-
0029670970
-
54-dependent regulators: Derepression as a control mechanism
-
54-dependent regulators: derepression as a control mechanism. Mol Microbiol 19: 409-416.
-
(1996)
Mol Microbiol
, vol.19
, pp. 409-416
-
-
Shingler, V.1
-
33
-
-
0027400541
-
Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVl150 and identification of DmpR as a member of the NtrC family of transcriptional activators
-
Shingler, V., Bartilson, M., and Moore, T. (1993) Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVl150 and identification of DmpR as a member of the NtrC family of transcriptional activators. J Bacteriol 175: 1596-1604.
-
(1993)
J Bacteriol
, vol.175
, pp. 1596-1604
-
-
Shingler, V.1
Bartilson, M.2
Moore, T.3
-
34
-
-
0030849481
-
Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples
-
Sticher, P., Jaspers, M.C.M., Stemmler, K., Harms, H., Zehnder, A.J.B., and van der Meer, J.R. (1997) Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples. Appl Environ Microbiol 63: 4053-4060.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4053-4060
-
-
Sticher, P.1
Jaspers, M.C.M.2
Stemmler, K.3
Harms, H.4
Zehnder, A.J.B.5
Van Der Meer, J.R.6
-
35
-
-
0142027136
-
Development of a set of simple bacterial biosensors for quantitative and rapid measurements of arsenite and arsenate in potable water
-
Stocker, J., Balluch, D., Gsell, M., Harms, H., Feliciano, J., Daunert, S., and van der Meer, J.R. (2003) Development of a set of simple bacterial biosensors for quantitative and rapid measurements of arsenite and arsenate in potable water. Environ Sci Technol 37: 4743-4750.
-
(2003)
Environ Sci Technol
, vol.37
, pp. 4743-4750
-
-
Stocker, J.1
Balluch, D.2
Gsell, M.3
Harms, H.4
Feliciano, J.5
Daunert, S.6
Van Der Meer, J.R.7
-
36
-
-
0032795933
-
Bacteria designed for bioremediation
-
Timmis, K.N., and Pieper, D.H. (1999) Bacteria designed for bioremediation. Trends Biotechnol 17: 200-204.
-
(1999)
Trends Biotechnol
, vol.17
, pp. 200-204
-
-
Timmis, K.N.1
Pieper, D.H.2
-
37
-
-
0036091576
-
Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters
-
Tropel, D., and van der Meer, J.R. (2002) Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters. J Bacteriol 184: 2914-2924.
-
(2002)
J Bacteriol
, vol.184
, pp. 2914-2924
-
-
Tropel, D.1
Van Der Meer, J.R.2
-
38
-
-
0023809060
-
Loss of the toluene-xylene catabolic genes of TOL plasmid pWW0 during growth of Pseudomonas putida on benzoate is due to a selective growth advantage of 'cured' segregants
-
Williams, P.A., Taylor, S.D., and Gibb, L.E. (1988) Loss of the toluene-xylene catabolic genes of TOL plasmid pWW0 during growth of Pseudomonas putida on benzoate is due to a selective growth advantage of 'cured' segregants. J Gen Microbiol 134: 2039-2048.
-
(1988)
J Gen Microbiol
, vol.134
, pp. 2039-2048
-
-
Williams, P.A.1
Taylor, S.D.2
Gibb, L.E.3
-
39
-
-
0033989197
-
Generation of novel bacterial regulatory proteins that detect priority pollutant phenols
-
Wise, A.A., and Kuske, C.R. (2000) Generation of novel bacterial regulatory proteins that detect priority pollutant phenols. Appl Environ Microbiol 66: 163-169.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 163-169
-
-
Wise, A.A.1
Kuske, C.R.2
|