Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters

Journal of Bacteriology

Volumn 184, Issue 11, 2002, Pages 2914-2924

  Tropel, David ^a   Van der Meer, Jan Roelof ^a  

^a SWISS FEDERAL INSTITUTE OF AQUATIC SCIENCE AND TECHNOLOGY   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

2 HYDROXYBIPHENYL; 2,2' BIPHENYLDIOL; CALMODULIN BINDING PROTEIN; GENE PRODUCT; HYBRID PROTEIN; HYDROXYBIPHENYL; PROTEIN HBPC; PROTEIN HBPD; REGULATOR PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; BINDING SITE; CONTROLLED STUDY; DNA BINDING; DNA FOOTPRINTING; ENHANCER REGION; GEL MOBILITY SHIFT ASSAY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN DNA BINDING; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; PSEUDOMONAS; PSEUDOMONAS AZELAICA; REGULON; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TRANSCRIPTION REGULATION;

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEINS; BASE SEQUENCE; BINDING SITES; CALMODULIN-BINDING PROTEINS; DEOXYRIBONUCLEASE I; DNA FOOTPRINTING; DNA-BINDING PROTEINS; ELECTROPHORETIC MOBILITY SHIFT ASSAY; ENHANCER ELEMENTS (GENETICS); ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); PSEUDOMONAS; RECOMBINANT FUSION PROTEINS; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS AZELAICA;

EID: 0036091576     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.11.2914-2924.2002     Document Type: Article

References (37)

1. Activation of the Pseudomonas TOL plasmid upper pathway operon
2. Physical organization of the upper pathway operon promoter of the Pseudomonas TOL plasmid. Sequence and positional requirements for XylR-dependent activation of transcription
3. New insights into the activation of o-xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substrates
4. Active contribution of two domains to cooperative DNA binding of the enhancer-binding protein nitrogen regulator I (NtrC) of Escherichia coli: Stimulation by phosphorylation and the binding of ATP
5. 54-dependent P u promoter of TOL plasmid
6. The xylABC promoter from the Pseudomonas putida TOL plasmid is activated by nitrogen regulatory genes in Escherichia coli
7. Visualization of DNA-protein intermediates during activation of the P u promoter of the TOL plasmid of Pseudomonas putida
8. Analysis of an upstream regulatory sequence required for activation of the regulatory gene XylS in xylene metabolism directed by the TOL plasmid of Pseudomonas putida
9. Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid
10. Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida
11. Transcriptional organization and dynamic expression of the hbpCAD genes, which encode the first three enzymes for 2-hy-droxybiphenyl degradation in Pseudomonas azelaica HBP1
12. Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of 'Pseudomonas azelaica' HBP1
13. HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1
14. Degradation of 2-hydroxybiphenyl and 2,2′-dihydroxybiphenyl by Pseudomonas sp. strain HBP1
15. Metabolism of 2,2′-dihydroxybiphenyl by Pseudomonas sp. strain HBP1: Production and consumption of 2,2′,3-trihydroxybiphenyl
16. 54-dependent transcriptional activator
17. 54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
18. 54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA
19. 54-dependent transcriptional activator of Pseudomonas putida
20. 54-promoters of the TOL plasmid of Pseudomonas putida
21. Promoters responsive to DNA bending: A common theme in prokaryotic gene expression
22. Oligomerization of NtrC at the glnA enhancer is required for transcriptional activation
23. Int-B13, an unusual site-specific rccombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13
24. Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter
25. Simultaneous binding of two DNA duplexes to the NtrC-enhancer complex studied by two-color fluorescence cross-correlation spectroscopy
26. Association states of the transcription activator protein NtrC from E. coli determined by analytical ultra-centrifugation
27. DNA sequencing with chain-terminating inhibitors
28. Cooperative binding of DctD to the dctA upstream activation sequence of Rhizobium meliloti is enhanced in a constitutively active truncated mutant
29. DNA binding and oligomerization of NtrC studied by fluorescence anisotropy and fluorescence correlation spectroscopy
30. 54-dependent regulators: Derepression as a control mechanism
31. Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples
32. 54-dependent Po promoter
33. The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription
34. An Escherichia coli expression vector that allows recovery of proteins with native N-termini from purified calmodulin-binding peptide fusions
35. Unusual oligomerization required for activity of NtrC, a bacterial enhancer-binding protein