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Volumn 6, Issue , 2011, Pages

Nonsynonymous substitution rate (Ka) is a relatively consistent parameter for defining fast-evolving and slow-evolving protein-coding genes

Author keywords

[No Author keywords available]

Indexed keywords

AVES; MAMMALIA; PRIMATES;

EID: 79951788396     PISSN: None     EISSN: 17456150     Source Type: Journal    
DOI: 10.1186/1745-6150-6-13     Document Type: Article
Times cited : (43)

References (75)
  • 1
    • 24644505259 scopus 로고    scopus 로고
    • Fewer genes, more noncoding RNA
    • 10.1126/science.1116800, 16141064
    • Claverie JM. Fewer genes, more noncoding RNA. Science 2005, 309:1529-1530. 10.1126/science.1116800, 16141064.
    • (2005) Science , vol.309 , pp. 1529-1530
    • Claverie, J.M.1
  • 3
    • 41149121347 scopus 로고    scopus 로고
    • The evolution of mammalian gene families
    • 10.1371/journal.pone.0000085, 1762380, 17183716
    • Demuth JP, De Bie T, Stajich JE, Cristianini N, Hahn MW. The evolution of mammalian gene families. PLoS One 2006, 1:e85. 10.1371/journal.pone.0000085, 1762380, 17183716.
    • (2006) PLoS One , vol.1
    • Demuth, J.P.1    De Bie, T.2    Stajich, J.E.3    Cristianini, N.4    Hahn, M.W.5
  • 9
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • 10.1038/nature03001, 15496913
    • Finishing the euchromatic sequence of the human genome. Nature 2004, 431:931-945. 10.1038/nature03001, 15496913.
    • (2004) Nature , vol.431 , pp. 931-945
  • 10
    • 24344500211 scopus 로고    scopus 로고
    • Initial sequence of the chimpanzee genome and comparison with the human genome
    • 10.1038/nature04072, 16136131
    • Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 2005, 437:69-87. 10.1038/nature04072, 16136131.
    • (2005) Nature , vol.437 , pp. 69-87
  • 20
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • 10.1038/nature03154, 15592404, International Chicken Genome Sequencing Consortium
    • International Chicken Genome Sequencing Consortium Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716. 10.1038/nature03154, 15592404, International Chicken Genome Sequencing Consortium.
    • (2004) Nature , vol.432 , pp. 695-716
  • 21
    • 34547709593 scopus 로고    scopus 로고
    • Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals
    • 10.1093/molbev/msm104, 17525472
    • Parmley JL, Hurst LD. Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals. Mol Biol Evol 2007, 24:1600-1603. 10.1093/molbev/msm104, 17525472.
    • (2007) Mol Biol Evol , vol.24 , pp. 1600-1603
    • Parmley, J.L.1    Hurst, L.D.2
  • 22
    • 67650067467 scopus 로고    scopus 로고
    • Gamma-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates
    • 10.1186/1745-6150-4-20, 2702329, 19531225
    • Wang DP, Wan HL, Zhang S, Yu J. Gamma-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates. Biol Direct 2009, 4:20. 10.1186/1745-6150-4-20, 2702329, 19531225.
    • (2009) Biol Direct , vol.4 , pp. 20
    • Wang, D.P.1    Wan, H.L.2    Zhang, S.3    Yu, J.4
  • 23
    • 71549123991 scopus 로고    scopus 로고
    • How do variable substitution rates influence Ka and Ks calculations?
    • 10.1016/S1672-0229(08)60040-6, 19944384
    • Wang D, Zhang S, He F, Zhu J, Hu S, Yu J. How do variable substitution rates influence Ka and Ks calculations?. Genomics Proteomics Bioinformatics 2009, 7:116-127. 10.1016/S1672-0229(08)60040-6, 19944384.
    • (2009) Genomics Proteomics Bioinformatics , vol.7 , pp. 116-127
    • Wang, D.1    Zhang, S.2    He, F.3    Zhu, J.4    Hu, S.5    Yu, J.6
  • 24
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 1986, 3:418-426.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 25
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • Li WH, Wu CI, Luo CC. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 1985, 2:150-174.
    • (1985) Mol Biol Evol , vol.2 , pp. 150-174
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 26
    • 0027533924 scopus 로고
    • Evolution of the Zfx and Zfy genes: rates and interdependence between the genes
    • Pamilo P, Bianchi NO. Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol Biol Evol 1993, 10:271-281.
    • (1993) Mol Biol Evol , vol.10 , pp. 271-281
    • Pamilo, P.1    Bianchi, N.O.2
  • 27
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • 10.1007/BF02407308, 8433381
    • Li WH. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J Mol Evol 1993, 36:96-99. 10.1007/BF02407308, 8433381.
    • (1993) J Mol Evol , vol.36 , pp. 96-99
    • Li, W.H.1
  • 28
    • 8444247896 scopus 로고    scopus 로고
    • Comparison of three methods for estimating rates of synonymous and nonsynonymous nucleotide substitutions
    • 10.1093/molbev/msh242, 15329386
    • Tzeng YH, Pan R, Li WH. Comparison of three methods for estimating rates of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 2004, 21:2290-2298. 10.1093/molbev/msh242, 15329386.
    • (2004) Mol Biol Evol , vol.21 , pp. 2290-2298
    • Tzeng, Y.H.1    Pan, R.2    Li, W.H.3
  • 29
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman N, Yang Z. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol 1994, 11:725-736.
    • (1994) Mol Biol Evol , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 30
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang Z, Nielsen R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol 2000, 17:32-43.
    • (2000) Mol Biol Evol , vol.17 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2
  • 31
    • 33747835539 scopus 로고    scopus 로고
    • Computing Ka and Ks with a consideration of unequal transitional substitutions
    • 10.1186/1471-2148-6-44, 1552089, 16740169
    • Zhang Z, Li J, Yu J. Computing Ka and Ks with a consideration of unequal transitional substitutions. BMC Evol Biol 2006, 6:44. 10.1186/1471-2148-6-44, 1552089, 16740169.
    • (2006) BMC Evol Biol , vol.6 , pp. 44
    • Zhang, Z.1    Li, J.2    Yu, J.3
  • 33
    • 0021070935 scopus 로고
    • Codon substitution in evolution and the "saturation" of synonymous changes
    • 1202222, 6642197
    • Gojobori T. Codon substitution in evolution and the "saturation" of synonymous changes. Genetics 1983, 105:1011-1027. 1202222, 6642197.
    • (1983) Genetics , vol.105 , pp. 1011-1027
    • Gojobori, T.1
  • 34
    • 0042509988 scopus 로고    scopus 로고
    • Getting positive about selection
    • 10.1186/gb-2003-4-8-331, 193638, 12914654
    • Koonin EV, Rogozin IB. Getting positive about selection. Genome Biol 2003, 4:331. 10.1186/gb-2003-4-8-331, 193638, 12914654.
    • (2003) Genome Biol , vol.4 , pp. 331
    • Koonin, E.V.1    Rogozin, I.B.2
  • 35
    • 35349016235 scopus 로고    scopus 로고
    • Recognition of microorganisms and activation of the immune response
    • 10.1038/nature06246, 17943118
    • Medzhitov R. Recognition of microorganisms and activation of the immune response. Nature 2007, 449:819-826. 10.1038/nature06246, 17943118.
    • (2007) Nature , vol.449 , pp. 819-826
    • Medzhitov, R.1
  • 36
    • 5444236355 scopus 로고    scopus 로고
    • Positive selection on the human genome
    • 10.1093/hmg/ddh253, 15358731
    • Vallender EJ, Lahn BT. Positive selection on the human genome. Hum Mol Genet 2004, 13(Spec No 2):R245-254. 10.1093/hmg/ddh253, 15358731.
    • (2004) Hum Mol Genet , vol.13 , Issue.SPEC NO. 2
    • Vallender, E.J.1    Lahn, B.T.2
  • 37
    • 0035408611 scopus 로고    scopus 로고
    • Cytokines: past, present, and future
    • 10.1007/BF02982543, 11530802
    • Oppenheim JJ. Cytokines: past, present, and future. Int J Hematol 2001, 74:3-8. 10.1007/BF02982543, 11530802.
    • (2001) Int J Hematol , vol.74 , pp. 3-8
    • Oppenheim, J.J.1
  • 39
    • 0035473482 scopus 로고    scopus 로고
    • Adaptor proteins
    • 10.1038/sj.onc.1204769, 11607828
    • Flynn DC. Adaptor proteins. Oncogene 2001, 20:6270-6272. 10.1038/sj.onc.1204769, 11607828.
    • (2001) Oncogene , vol.20 , pp. 6270-6272
    • Flynn, D.C.1
  • 40
    • 0037032835 scopus 로고    scopus 로고
    • The protein kinase complement of the human genome
    • 10.1126/science.1075762, 12471243
    • Manning G, Whyte DB, Martinez R, Hunter T, Sudarsanam S. The protein kinase complement of the human genome. Science 2002, 298:1912-1934. 10.1126/science.1075762, 12471243.
    • (2002) Science , vol.298 , pp. 1912-1934
    • Manning, G.1    Whyte, D.B.2    Martinez, R.3    Hunter, T.4    Sudarsanam, S.5
  • 41
    • 33749563056 scopus 로고    scopus 로고
    • Protein evolution is faster outside the cell
    • 10.1093/molbev/msl081, 16891379
    • Julenius K, Pedersen AG. Protein evolution is faster outside the cell. Mol Biol Evol 2006, 23:2039-2048. 10.1093/molbev/msl081, 16891379.
    • (2006) Mol Biol Evol , vol.23 , pp. 2039-2048
    • Julenius, K.1    Pedersen, A.G.2
  • 43
    • 23144455501 scopus 로고    scopus 로고
    • Neurodegenerative disorders: Parkinson's disease and Huntington's disease
    • 10.1136/jnnp.2004.060186, 1739745, 16024878
    • Hague SM, Klaffke S, Bandmann O. Neurodegenerative disorders: Parkinson's disease and Huntington's disease. J Neurol Neurosurg Psychiatry 2005, 76:1058-1063. 10.1136/jnnp.2004.060186, 1739745, 16024878.
    • (2005) J Neurol Neurosurg Psychiatry , vol.76 , pp. 1058-1063
    • Hague, S.M.1    Klaffke, S.2    Bandmann, O.3
  • 44
    • 33750039987 scopus 로고    scopus 로고
    • Current perspectives on the genetic causes of neural tube defects
    • 10.1007/s10048-006-0052-2, 16941185
    • De Marco P, Merello E, Mascelli S, Capra V. Current perspectives on the genetic causes of neural tube defects. Neurogenetics 2006, 7:201-221. 10.1007/s10048-006-0052-2, 16941185.
    • (2006) Neurogenetics , vol.7 , pp. 201-221
    • De Marco, P.1    Merello, E.2    Mascelli, S.3    Capra, V.4
  • 45
    • 0028112558 scopus 로고
    • Platelet-derived growth factor (PDGF) receptors in the developing mouse optic pathway
    • 10.1017/S0952523800011081, 8011581
    • Hutchins JB, Zhang X. Platelet-derived growth factor (PDGF) receptors in the developing mouse optic pathway. Vis Neurosci 1994, 11:33-40. 10.1017/S0952523800011081, 8011581.
    • (1994) Vis Neurosci , vol.11 , pp. 33-40
    • Hutchins, J.B.1    Zhang, X.2
  • 47
    • 34547656204 scopus 로고    scopus 로고
    • Hedgehog signaling pathway in neural development and disease
    • 10.1016/j.psyneuen.2007.03.017, 17619088
    • Gulino A, Di Marcotullio L, Ferretti E, De Smaele E, Screpanti I. Hedgehog signaling pathway in neural development and disease. Psychoneuroendocrinology 2007, 32(Suppl 1):S52-56. 10.1016/j.psyneuen.2007.03.017, 17619088.
    • (2007) Psychoneuroendocrinology , vol.32 , Issue.SUPPL 1
    • Gulino, A.1    Di Marcotullio, L.2    Ferretti, E.3    De Smaele, E.4    Screpanti, I.5
  • 48
    • 0034065936 scopus 로고    scopus 로고
    • Glutamate as a neurotransmitter in the brain: review of physiology and pathology
    • Meldrum BS. Glutamate as a neurotransmitter in the brain: review of physiology and pathology. J Nutr 2000, 130:1007S-1015S.
    • (2000) J Nutr , vol.130
    • Meldrum, B.S.1
  • 50
    • 43549090410 scopus 로고    scopus 로고
    • Functional protein divergence in the evolution of Homo sapiens
    • 10.1186/gb-2008-9-2-r33, 2374701, 18279504
    • Lopez-Bigas N, De S, Teichmann SA. Functional protein divergence in the evolution of Homo sapiens. Genome Biol 2008, 9:R33. 10.1186/gb-2008-9-2-r33, 2374701, 18279504.
    • (2008) Genome Biol , vol.9
    • Lopez-Bigas, N.1    De, S.2    Teichmann, S.A.3
  • 51
    • 33745152298 scopus 로고    scopus 로고
    • The contribution of Bruce Glick to the definition of the role played by the bursa of Fabricius in the development of the B cell lineage
    • 10.1111/j.1365-2249.2006.03131.x, 1942006, 16792666
    • Ribatti D, Crivellato E, Vacca A. The contribution of Bruce Glick to the definition of the role played by the bursa of Fabricius in the development of the B cell lineage. Clin Exp Immunol 2006, 145:1-4. 10.1111/j.1365-2249.2006.03131.x, 1942006, 16792666.
    • (2006) Clin Exp Immunol , vol.145 , pp. 1-4
    • Ribatti, D.1    Crivellato, E.2    Vacca, A.3
  • 52
    • 44349127575 scopus 로고    scopus 로고
    • Modeling transcriptome based on transcript-sampling data
    • 10.1371/journal.pone.0001659, 2243018, 18286206
    • Zhu J, He F, Wang J, Yu J. Modeling transcriptome based on transcript-sampling data. PLoS One 2008, 3:e1659. 10.1371/journal.pone.0001659, 2243018, 18286206.
    • (2008) PLoS One , vol.3
    • Zhu, J.1    He, F.2    Wang, J.3    Yu, J.4
  • 53
    • 0034978556 scopus 로고    scopus 로고
    • Highly expressed genes in yeast evolve slowly
    • 1461684, 11430355
    • Pal C, Papp B, Hurst LD. Highly expressed genes in yeast evolve slowly. Genetics 2001, 158:927-931. 1461684, 11430355.
    • (2001) Genetics , vol.158 , pp. 927-931
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 54
    • 26444621352 scopus 로고    scopus 로고
    • Why highly expressed proteins evolve slowly
    • 10.1073/pnas.0504070102, 1242296, 16176987
    • Drummond DA, Bloom JD, Adami C, Wilke CO, Arnold FH. Why highly expressed proteins evolve slowly. Proc Natl Acad Sci USA 2005, 102:14338-14343. 10.1073/pnas.0504070102, 1242296, 16176987.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 14338-14343
    • Drummond, D.A.1    Bloom, J.D.2    Adami, C.3    Wilke, C.O.4    Arnold, F.H.5
  • 55
    • 1542286776 scopus 로고    scopus 로고
    • Mammalian housekeeping genes evolve more slowly than tissue-specific genes
    • 10.1093/molbev/msh010, 14595094
    • Zhang L, Li WH. Mammalian housekeeping genes evolve more slowly than tissue-specific genes. Mol Biol Evol 2004, 21:236-239. 10.1093/molbev/msh010, 14595094.
    • (2004) Mol Biol Evol , vol.21 , pp. 236-239
    • Zhang, L.1    Li, W.H.2
  • 56
    • 52949138674 scopus 로고    scopus 로고
    • On the nature of human housekeeping genes
    • 10.1016/j.tig.2008.08.004, 18786740
    • Zhu J, He F, Hu S, Yu J. On the nature of human housekeeping genes. Trends Genet 2008, 24:481-484. 10.1016/j.tig.2008.08.004, 18786740.
    • (2008) Trends Genet , vol.24 , pp. 481-484
    • Zhu, J.1    He, F.2    Hu, S.3    Yu, J.4
  • 57
    • 66149123308 scopus 로고    scopus 로고
    • Inaugural Article: The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages
    • 10.1073/pnas.0901808106, 2666616, 19351897
    • Wolf YI, Novichkov PS, Karev GP, Koonin EV, Lipman DJ. Inaugural Article: The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages. Proc Natl Acad Sci USA 2009, 106:7273-7280. 10.1073/pnas.0901808106, 2666616, 19351897.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 7273-7280
    • Wolf, Y.I.1    Novichkov, P.S.2    Karev, G.P.3    Koonin, E.V.4    Lipman, D.J.5
  • 58
    • 14544279484 scopus 로고    scopus 로고
    • Inverse relationship between evolutionary rate and age of mammalian genes
    • 10.1093/molbev/msi045, 15537804
    • Alba MM, Castresana J. Inverse relationship between evolutionary rate and age of mammalian genes. Mol Biol Evol 2005, 22:598-606. 10.1093/molbev/msi045, 15537804.
    • (2005) Mol Biol Evol , vol.22 , pp. 598-606
    • Alba, M.M.1    Castresana, J.2
  • 59
    • 0033565762 scopus 로고    scopus 로고
    • Do essential genes evolve slowly?
    • 10.1016/S0960-9822(99)80334-0, 10421576
    • Hurst LD, Smith NG. Do essential genes evolve slowly?. Curr Biol 1999, 9:747-750. 10.1016/S0960-9822(99)80334-0, 10421576.
    • (1999) Curr Biol , vol.9 , pp. 747-750
    • Hurst, L.D.1    Smith, N.G.2
  • 60
    • 7544228191 scopus 로고    scopus 로고
    • Crystal structure of human ISG20, an interferon-induced antiviral ribonuclease
    • 10.1016/j.febslet.2004.09.074, 15527770
    • Horio T, Murai M, Inoue T, Hamasaki T, Tanaka T, Ohgi T. Crystal structure of human ISG20, an interferon-induced antiviral ribonuclease. FEBS Lett 2004, 577:111-116. 10.1016/j.febslet.2004.09.074, 15527770.
    • (2004) FEBS Lett , vol.577 , pp. 111-116
    • Horio, T.1    Murai, M.2    Inoue, T.3    Hamasaki, T.4    Tanaka, T.5    Ohgi, T.6
  • 63
    • 77951682635 scopus 로고    scopus 로고
    • KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies
    • 10.1016/S1672-0229(10)60008-3, 20451164
    • Wang D, Zhang Y, Zhang Z, Zhu J, Yu J. KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics Proteomics Bioinformatics 2010, 8:77-80. 10.1016/S1672-0229(10)60008-3, 20451164.
    • (2010) Genomics Proteomics Bioinformatics , vol.8 , pp. 77-80
    • Wang, D.1    Zhang, Y.2    Zhang, Z.3    Zhu, J.4    Yu, J.5
  • 64
    • 33846892994 scopus 로고    scopus 로고
    • IDconverter and IDClight: conversion and annotation of gene and protein IDs
    • 10.1186/1471-2105-8-9, 1779800, 17214880
    • Alibes A, Yankilevich P, Canada A, Diaz-Uriarte R. IDconverter and IDClight: conversion and annotation of gene and protein IDs. BMC Bioinformatics 2007, 8:9. 10.1186/1471-2105-8-9, 1779800, 17214880.
    • (2007) BMC Bioinformatics , vol.8 , pp. 9
    • Alibes, A.1    Yankilevich, P.2    Canada, A.3    Diaz-Uriarte, R.4
  • 66
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm S. A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics 1979, 65-70.
    • (1979) Scandinavian Journal of Statistics , pp. 65-70
    • Holm, S.1
  • 67
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • 10.1101/gr.1239303, 403769, 14597658
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13:2498-2504. 10.1101/gr.1239303, 403769, 14597658.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 68
    • 23144448512 scopus 로고    scopus 로고
    • ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures
    • 10.1093/nar/gki370, 1160131, 15980475
    • Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res 2005, 33:W299-302. 10.1093/nar/gki370, 1160131, 15980475.
    • (2005) Nucleic Acids Res , vol.33
    • Landau, M.1    Mayrose, I.2    Rosenberg, Y.3    Glaser, F.4    Martz, E.5    Pupko, T.6    Ben-Tal, N.7
  • 70
    • 44349158988 scopus 로고    scopus 로고
    • How many human genes can be defined as housekeeping with current expression data?
    • 10.1186/1471-2164-9-172, 2396180, 18416810
    • Zhu J, He F, Song S, Wang J, Yu J. How many human genes can be defined as housekeeping with current expression data?. BMC Genomics 2008, 9:172. 10.1186/1471-2164-9-172, 2396180, 18416810.
    • (2008) BMC Genomics , vol.9 , pp. 172
    • Zhu, J.1    He, F.2    Song, S.3    Wang, J.4    Yu, J.5
  • 71
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • 1461088, 10790415
    • Yang Z, Nielsen R, Goldman N, Pedersen AM. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 2000, 155:431-449. 1461088, 10790415.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 72
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol 1998, 15:568-573.
    • (1998) Mol Biol Evol , vol.15 , pp. 568-573
    • Yang, Z.1
  • 73
    • 34548440667 scopus 로고    scopus 로고
    • Genes under positive selection in Escherichia coli
    • 10.1101/gr.6254707, 1950902, 17675366
    • Petersen L, Bollback JP, Dimmic M, Hubisz M, Nielsen R. Genes under positive selection in Escherichia coli. Genome Res 2007, 17:1336-1343. 10.1101/gr.6254707, 1950902, 17675366.
    • (2007) Genome Res , vol.17 , pp. 1336-1343
    • Petersen, L.1    Bollback, J.P.2    Dimmic, M.3    Hubisz, M.4    Nielsen, R.5
  • 74
    • 77956336624 scopus 로고    scopus 로고
    • A novel role for minimal introns: routing mRNAs to the cytosol
    • 10.1371/journal.pone.0010144, 2856156, 20419085
    • Zhu J, He F, Wang D, Liu K, Huang D, Xiao J, Wu J, Hu S, Yu J. A novel role for minimal introns: routing mRNAs to the cytosol. PLoS One 2010, 5:e10144. 10.1371/journal.pone.0010144, 2856156, 20419085.
    • (2010) PLoS One , vol.5
    • Zhu, J.1    He, F.2    Wang, D.3    Liu, K.4    Huang, D.5    Xiao, J.6    Wu, J.7    Hu, S.8    Yu, J.9
  • 75
    • 33751253721 scopus 로고    scopus 로고
    • Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates
    • 10.1016/S1672-0229(06)60030-2, 17127215
    • Zhang Z, Yu J. Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates. Genomics Proteomics Bioinformatics 2006, 4:173-181. 10.1016/S1672-0229(06)60030-2, 17127215.
    • (2006) Genomics Proteomics Bioinformatics , vol.4 , pp. 173-181
    • Zhang, Z.1    Yu, J.2


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