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Volumn 9, Issue , 2008, Pages

How many human genes can be defined as housekeeping with current expression data?

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; ELONGATION FACTOR; PROTEASOME; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 44349158988     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-172     Document Type: Article
Times cited : (123)

References (49)
  • 2
    • 0036178995 scopus 로고    scopus 로고
    • Control genes and variability: Absence of ubiquitous reference transcripts in diverse mammalian expression studies
    • 155273 2002/02/06 11827948 10.1101/gr.217802
    • Lee PD Sladek R Greenwood CM Hudson TJ Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies Genome Res 2002/02/06 2002 12 2 292-297 155273 11827948 10.1101/gr.217802
    • (2002) Genome Res , vol.12 , Issue.2 , pp. 292-297
    • Lee, P.D.1    Sladek, R.2    Greenwood, C.M.3    Hudson, T.J.4
  • 3
    • 21244499405 scopus 로고    scopus 로고
    • GAPDH as a housekeeping gene: Analysis of GAPDH mRNA expression in a panel of 72 human tissues
    • 10.1152/physiolgenomics.00025.2005 2005/03/17 10.1152/ physiolgenomics.00025.2005 15769908
    • Barber RD Harmer DW Coleman RA Clark BJ GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues Physiol Genomics 2005/03/17 2005 21 3 389-395 10.1152/physiolgenomics.00025.2005 15769908
    • (2005) Physiol Genomics , vol.21 , Issue.3 , pp. 389-395
    • Barber, R.D.1    Harmer, D.W.2    Coleman, R.A.3    Clark, B.J.4
  • 5
    • 0035931097 scopus 로고    scopus 로고
    • Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues"
    • 11773595
    • Butte AJ Dzau VJ Glueck SB Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues" Physiol Genomics 2001 7 2 95-96 11773595
    • (2001) Physiol Genomics , vol.7 , Issue.2 , pp. 95-96
    • Butte, A.J.1    Dzau, V.J.2    Glueck, S.B.3
  • 6
    • 0034720002 scopus 로고    scopus 로고
    • Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes
    • 11015593
    • Warrington JA Nair A Mahadevappa M Tsyganskaya M Comparison of human adult and fetal expression and identification of 535 housekeeping/ maintenance genes Physiol Genomics 2000 2 3 143-147 11015593
    • (2000) Physiol Genomics , vol.2 , Issue.3 , pp. 143-147
    • Warrington, J.A.1    Nair, A.2    Mahadevappa, M.3    Tsyganskaya, M.4
  • 8
    • 0038692119 scopus 로고    scopus 로고
    • Human housekeeping genes are compact
    • 10.1016/S0168-9525(03)00140-9 12850439
    • Eisenberg E Levanon EY Human housekeeping genes are compact Trends Genet 2003 19 7 362-365 12850439
    • (2003) Trends Genet , vol.19 , Issue.7 , pp. 362-365
    • Eisenberg, E.1    Levanon, E.Y.2
  • 10
    • 4744355710 scopus 로고    scopus 로고
    • Compactness of human housekeeping genes: Selection for economy or genomic design?
    • 10.1016/j.tig.2004.03.006 15109779
    • Vinogradov AE Compactness of human housekeeping genes: Selection for economy or genomic design? Trends Genet 2004 20 5 248-253 10.1016/ j.tig.2004.03.006 15109779
    • (2004) Trends Genet , vol.20 , Issue.5 , pp. 248-253
    • Vinogradov, A.E.1
  • 11
    • 0345411919 scopus 로고    scopus 로고
    • Isochores and tissue-specificity
    • 212799 12930973 10.1093/nar/gkg699
    • Vinogradov AE Isochores and tissue-specificity Nucleic Acids Res 2003 31 17 5212-5220 212799 12930973 10.1093/nar/gkg699
    • (2003) Nucleic Acids Res , vol.31 , Issue.17 , pp. 5212-5220
    • Vinogradov, A.E.1
  • 12
    • 1542286776 scopus 로고    scopus 로고
    • Mammalian housekeeping genes evolve more slowly than tissue-specific genes
    • 10.1093/molbev/msh010 14595094
    • Zhang L Li WH Mammalian housekeeping genes evolve more slowly than tissue-specific genes Mol Biol Evol 2004 21 2 236-239 10.1093/molbev/ msh010 14595094
    • (2004) Mol Biol Evol , vol.21 , Issue.2 , pp. 236-239
    • Zhang, L.1    Li, W.H.2
  • 13
    • 39749149956 scopus 로고    scopus 로고
    • Housekeeping genes tend to show reduced upstream sequence conservation
    • 10.1186/gb-2007-8-7-r140 17626644 2323216
    • Farre D Bellora N Mularoni L Messeguer X Alba MM Housekeeping genes tend to show reduced upstream sequence conservation Genome Biol 2007 8 7 R140 10.1186/gb-2007-8-7-r140 17626644 2323216
    • (2007) Genome Biol , vol.8 , Issue.7
    • Farre, D.1    Bellora, N.2    Mularoni, L.3    Messeguer, X.4    Alba, M.M.5
  • 14
    • 4444352557 scopus 로고    scopus 로고
    • Protein domains enriched in mammalian tissue-specific or widely expressed genes
    • 10.1016/j.tig.2004.08.002 15363898
    • Lehner B Fraser AG Protein domains enriched in mammalian tissue-specific or widely expressed genes Trends Genet 2004 20 10 468-472 10.1016/ j.tig.2004.08.002 15363898
    • (2004) Trends Genet , vol.20 , Issue.10 , pp. 468-472
    • Lehner, B.1    Fraser, A.G.2
  • 16
    • 33750959359 scopus 로고    scopus 로고
    • Mining housekeeping genes with a Naive Bayes classifier
    • 1635426 2006/11/01 17074078 10.1186/1471-2164-7-277
    • De Ferrari L Aitken S Mining housekeeping genes with a Naive Bayes classifier BMC Genomics 2006/11/01 2006 7 277 1635426 17074078 10.1186/ 1471-2164-7-277
    • (2006) BMC Genomics , vol.7 , pp. 277
    • De Ferrari, L.1    Aitken, S.2
  • 17
    • 33846937260 scopus 로고    scopus 로고
    • Repetitive sequence environment distinguishes housekeeping genes
    • 1857324 17141428 10.1016/j.gene.2006.09.018
    • Eller CD Regelson M Merriman B Nelson S Horvath S Marahrens Y Repetitive sequence environment distinguishes housekeeping genes Gene 2007 390 1-2 153 165 1857324 17141428 10.1016/j.gene.2006.09.018
    • (2007) Gene , vol.390 , Issue.1-2 , pp. 153-165
    • Eller, C.D.1    Regelson, M.2    Merriman, B.3    Nelson, S.4    Horvath, S.5    Marahrens, Y.6
  • 18
    • 33344460411 scopus 로고    scopus 로고
    • Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins
    • 1175987 15998445 10.1186/gb-2005-6-7-r56
    • Freilich S Massingham T Bhattacharyya S Ponsting H Lyons PA Freeman TC Thornton JM Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins Genome Biol 2005 6 7 R56 1175987 15998445 10.1186/gb-2005-6-7-r56
    • (2005) Genome Biol , vol.6 , Issue.7
    • Freilich, S.1    Massingham, T.2    Bhattacharyya, S.3    Ponsting, H.4    Lyons, P.A.5    Freeman, T.C.6    Thornton, J.M.7
  • 22
    • 0029846871 scopus 로고    scopus 로고
    • The general transcription factors of RNA polymerase II
    • 10.1101/gad.10.21.2657 1996/11/01 8946909
    • Orphanides G Lagrange T Reinberg D The general transcription factors of RNA polymerase II Genes Dev 1996/11/01 1996 10 21 2657-2683 10.1101/ gad.10.21.2657 8946909
    • (1996) Genes Dev , vol.10 , Issue.21 , pp. 2657-2683
    • Orphanides, G.1    Lagrange, T.2    Reinberg, D.3
  • 23
    • 0034507632 scopus 로고    scopus 로고
    • Transcription of eukaryotic protein-coding genes
    • 10.1146/annurev.genet.34.1.77 2000/11/28 11092823
    • Lee TI Young RA Transcription of eukaryotic protein-coding genes Annu Rev Genet 2000/11/28 2000 34 77-137 10.1146/annurev.genet.34.1.77 11092823
    • (2000) Annu Rev Genet , vol.34 , pp. 77-137
    • Lee, T.I.1    Young, R.A.2
  • 24
    • 0033788228 scopus 로고    scopus 로고
    • The ends of the affair: Capping and polyadenylation
    • 10.1038/79583 2000/10/04 11017188
    • Shatkin AJ Manley JL The ends of the affair: Capping and polyadenylation Nat Struct Biol 2000/10/04 2000 7 10 838-842 10.1038/79583 11017188
    • (2000) Nat Struct Biol , vol.7 , Issue.10 , pp. 838-842
    • Shatkin, A.J.1    Manley, J.L.2
  • 25
    • 0033059981 scopus 로고    scopus 로고
    • Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
    • 98971 1999/06/05 10357856
    • Zhao J Hyman L Moore C Formation of mRNA 3′ ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis Microbiol Mol Biol Rev 1999/06/05 1999 63 2 405-445 98971 10357856
    • (1999) Microbiol Mol Biol Rev , vol.63 , Issue.2 , pp. 405-445
    • Zhao, J.1    Hyman, L.2    Moore, C.3
  • 26
    • 2342505693 scopus 로고    scopus 로고
    • New perspectives on connecting messenger RNA 3′ end formation to transcription
    • 10.1016/j.ceb.2004.03.007 2004/05/18 15145351
    • Proudfoot N New perspectives on connecting messenger RNA 3′ end formation to transcription Curr Opin Cell Biol 2004/05/18 2004 16 3 272-278 10.1016/j.ceb.2004.03.007 15145351
    • (2004) Curr Opin Cell Biol , vol.16 , Issue.3 , pp. 272-278
    • Proudfoot, N.1
  • 27
    • 0036674269 scopus 로고    scopus 로고
    • Large-scale proteomic analysis of the human spliceosome
    • 186633 2002/08/15 12176931 10.1101/gr.473902
    • Rappsilber J Ryder U Lamond AI Mann M Large-scale proteomic analysis of the human spliceosome Genome Res 2002/08/15 2002 12 8 1231-1245 186633 12176931 10.1101/gr.473902
    • (2002) Genome Res , vol.12 , Issue.8 , pp. 1231-1245
    • Rappsilber, J.1    Ryder, U.2    Lamond, A.I.3    Mann, M.4
  • 28
    • 0037068447 scopus 로고    scopus 로고
    • Comprehensive proteomic analysis of the human spliceosome
    • 10.1038/nature01031 12226669
    • Zhou Z Licklider LJ Gygi SP Reed R Comprehensive proteomic analysis of the human spliceosome Nature 2002/09/13 2002 419 6903 182-185 10.1038/ nature01031 12226669
    • (2002) Nature , vol.419 , Issue.6903 , pp. 182-185
    • Zhou, Z.1    Licklider, L.J.2    Gygi, S.P.3    Reed, R.4
  • 29
    • 0042671357 scopus 로고    scopus 로고
    • Pre-mRNA splicing: Awash in a sea of proteins
    • 10.1016/S1097-2765(03)00270-3 12887888
    • Jurica MS Moore MJ Pre-mRNA splicing: Awash in a sea of proteins Mol Cell 2003/07/31 2003 12 1 5-14 10.1016/S1097-2765(03)00270-3 12887888
    • (2003) Mol Cell , vol.12 , Issue.1 , pp. 5-14
    • Jurica, M.S.1    Moore, M.J.2
  • 30
    • 0037154964 scopus 로고    scopus 로고
    • A conserved mRNA export machinery coupled to pre-mRNA splicing
    • 10.1016/S0092-8674(02)00627-X 2002/03/23 11909523
    • Reed R Hurt E A conserved mRNA export machinery coupled to pre-mRNA splicing Cell 2002/03/23 2002 108 4 523-531 10.1016/ S0092-8674(02)00627-X 11909523
    • (2002) Cell , vol.108 , Issue.4 , pp. 523-531
    • Reed, R.1    Hurt, E.2
  • 31
    • 17044415652 scopus 로고    scopus 로고
    • Modularity within the architecture of the nuclear pore complex
    • 10.1016/j.sbi.2005.03.003 15837182
    • Schwartz TU Modularity within the architecture of the nuclear pore complex Curr Opin Struct Biol 2005/04/20 2005 15 2 221-226 10.1016/ j.sbi.2005.03.003 15837182
    • (2005) Curr Opin Struct Biol , vol.15 , Issue.2 , pp. 221-226
    • Schwartz, T.U.1
  • 32
    • 33744967486 scopus 로고    scopus 로고
    • Dynamic nuclear pore complexes: Life on the edge
    • 10.1016/j.cell.2006.05.027 2006/06/17 16777596
    • Tran EJ Wente SR Dynamic nuclear pore complexes: Life on the edge Cell 2006/06/17 2006 125 6 1041-1053 10.1016/j.cell.2006.05.027 16777596
    • (2006) Cell , vol.125 , Issue.6 , pp. 1041-1053
    • Tran, E.J.1    Wente, S.R.2
  • 33
    • 3943080710 scopus 로고    scopus 로고
    • The molecular mechanics of eukaryotic translation
    • 10.1146/annurev.biochem.73.030403.080419 15189156 2004/06/11 15189156
    • Kapp LD Lorsch JR The molecular mechanics of eukaryotic translation Annu Rev Biochem 2004/06/11 2004 73 657-704 10.1146/ annurev.biochem.73.030403.080419 15189156
    • (2004) Annu Rev Biochem , vol.73 , pp. 657-704
    • Kapp, L.D.1    Lorsch, J.R.2
  • 35
    • 0036083396 scopus 로고    scopus 로고
    • The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction
    • 2002/03/28 373-428 11917093
    • Glickman MH Ciechanover A The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction Physiol Rev 2002/03/28 2002 82 2 373-428 11917093
    • (2002) Physiol Rev , vol.82 , Issue.2 , pp. 373-428
    • Glickman, M.H.1    Ciechanover, A.2
  • 36
    • 34249098071 scopus 로고    scopus 로고
    • Mammalian RNA polymerase II core promoters: Insights from genome-wide studies
    • 10.1038/nrg2026 2007/05/09 17486122
    • Sandelin A Carninci P Lenhard B Ponjavic J Hayashizaki Y Hume DA Mammalian RNA polymerase II core promoters: Insights from genome-wide studies Nat Rev Genet 2007/05/09 2007 8 6 424-436 10.1038/nrg2026 17486122
    • (2007) Nat Rev Genet , vol.8 , Issue.6 , pp. 424-436
    • Sandelin, A.1    Carninci, P.2    Lenhard, B.3    Ponjavic, J.4    Hayashizaki, Y.5    Hume, D.A.6
  • 37
    • 44349127575 scopus 로고    scopus 로고
    • Modeling transcriptome based on transcript-sampling data
    • 2243018 2008/02/21 18286206 10.1371/journal.pone.0001659
    • Zhu J He F Wang J Yu J Modeling transcriptome based on transcript-sampling data PLoS ONE 2008/02/21 2008 3 2 e1659 2243018 18286206 10.1371/journal.pone.0001659
    • (2008) PLoS ONE , vol.3 , Issue.2
    • Zhu, J.1    He, F.2    Wang, J.3    Yu, J.4
  • 38
    • 31444431754 scopus 로고    scopus 로고
    • Reliability and reproducibility issues in DNA microarray measurements
    • 10.1016/j.tig.2005.12.005 16380191 2386979
    • Draghici S Khatri P Eklund AC Szallasi Z Reliability and reproducibility issues in DNA microarray measurements Trends Genet 2006 22 2 101-109 10.1016/j.tig.2005.12.005 16380191 2386979
    • (2006) Trends Genet , vol.22 , Issue.2 , pp. 101-109
    • Draghici, S.1    Khatri, P.2    Eklund, A.C.3    Szallasi, Z.4
  • 39
    • 0347363608 scopus 로고    scopus 로고
    • Interrogating the transcriptome
    • 10.1016/j.tibtech.2003.11.002 14690619
    • Ruan Y Le Ber P Ng HH Liu ET Interrogating the transcriptome Trends Biotechnol 2004 22 1 23-30 10.1016/j.tibtech.2003.11.00 14690619
    • (2004) Trends Biotechnol , vol.22 , Issue.1 , pp. 23-30
    • Ruan, Y.1    Le Ber, P.2    Ng, H.H.3    Liu, E.T.4
  • 40
    • 23644460630 scopus 로고    scopus 로고
    • Tag-based approaches for transcriptome research and genome annotation
    • 10.1038/nmeth768 15973418
    • Harbers M Carninci P Tag-based approaches for transcriptome research and genome annotation Nat Methods 2005 2 7 495-502 10.1038/nmeth768 15973418
    • (2005) Nat Methods , vol.2 , Issue.7 , pp. 495-502
    • Harbers, M.1    Carninci, P.2
  • 42
    • 33747322165 scopus 로고    scopus 로고
    • Tagging mammalian transcription complexity
    • 10.1016/j.tig.2006.07.003 2006/07/25 16859803
    • Carninci P Tagging mammalian transcription complexity Trends Genet 2006/ 07/25 2006 22 9 501-510 10.1016/j.tig.2006.07.003 16859803
    • (2006) Trends Genet , vol.22 , Issue.9 , pp. 501-510
    • Carninci, P.1
  • 43
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • 10.1038/nrg2083 2007/05/09 17486121
    • Kapranov P Willingham AT Gingeras TR Genome-wide transcription and the implications for genomic organization Nat Rev Genet 2007/05/09 2007 8 6 413-423 10.1038/nrg2083 17486121
    • (2007) Nat Rev Genet , vol.8 , Issue.6 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 44
    • 34250308428 scopus 로고    scopus 로고
    • Origin of phenotypes: Genes and transcripts
    • 10.1101/gr.6525007 2007/06/15 17567989
    • Gingeras TR Origin of phenotypes: Genes and transcripts Genome Res 2007/ 06/15 2007 17 6 682-690 10.1101/gr.6525007 17567989
    • (2007) Genome Res , vol.17 , Issue.6 , pp. 682-690
    • Gingeras, T.R.1
  • 45
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • 187518 2002/04/05 11932250 10.1101/gr.229202. Article published online before March 2002
    • Kent WJ BLAT - the BLAST-like alignment tool Genome Res 2002/04/05 2002 12 4 656-664 187518 11932250 10.1101/gr.229202. Article published online before March 2002
    • (2002) Genome Res , vol.12 , Issue.4 , pp. 656-664
    • Kent, W.J.1
  • 47
    • 0034161344 scopus 로고    scopus 로고
    • The cancer genome anatomy project: Building an annotated gene index
    • 10.1016/S0168-9525(99)01937-X 10689348
    • Strausberg RL Buetow KH Emmert-Buck MR Klausner RD The cancer genome anatomy project: Building an annotated gene index Trends Genet 2000 16 3 103-106 10.1016/S0168-9525(99)01937-X 10689348
    • (2000) Trends Genet , vol.16 , Issue.3 , pp. 103-106
    • Strausberg, R.L.1    Buetow, K.H.2    Emmert-Buck, M.R.3    Klausner, R.D.4


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