-
1
-
-
0032883806
-
Housekeeping genes as internal standards: Use and limits
-
10.1016/S0168-1656(99)00163-7 2000/01/05 10617337
-
Thellin O Zorzi W Lakaye B De Borman B Coumans B Hennen G Grisar T Igout A Heinen E Housekeeping genes as internal standards: Use and limits J Biotechnol 2000/01/05 1999 75 2-3 291-295 10.1016/S0168-1656(99)00163-7 10617337
-
(1999)
J Biotechnol
, vol.75
, Issue.2-3
, pp. 291-295
-
-
Thellin, O.1
Zorzi, W.2
Lakaye, B.3
De Borman, B.4
Coumans, B.5
Hennen, G.6
Grisar, T.7
Igout, A.8
Heinen, E.9
-
2
-
-
0036178995
-
Control genes and variability: Absence of ubiquitous reference transcripts in diverse mammalian expression studies
-
155273 2002/02/06 11827948 10.1101/gr.217802
-
Lee PD Sladek R Greenwood CM Hudson TJ Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies Genome Res 2002/02/06 2002 12 2 292-297 155273 11827948 10.1101/gr.217802
-
(2002)
Genome Res
, vol.12
, Issue.2
, pp. 292-297
-
-
Lee, P.D.1
Sladek, R.2
Greenwood, C.M.3
Hudson, T.J.4
-
3
-
-
21244499405
-
GAPDH as a housekeeping gene: Analysis of GAPDH mRNA expression in a panel of 72 human tissues
-
10.1152/physiolgenomics.00025.2005 2005/03/17 10.1152/ physiolgenomics.00025.2005 15769908
-
Barber RD Harmer DW Coleman RA Clark BJ GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues Physiol Genomics 2005/03/17 2005 21 3 389-395 10.1152/physiolgenomics.00025.2005 15769908
-
(2005)
Physiol Genomics
, vol.21
, Issue.3
, pp. 389-395
-
-
Barber, R.D.1
Harmer, D.W.2
Coleman, R.A.3
Clark, B.J.4
-
4
-
-
31044439550
-
Essential genes of a minimal bacterium
-
1324956 2006/01/13 16407165
-
Glass JI Assad-Garcia N Alperovich N Yooseph S Lewis MR Maruf M Hutchison CA III Smith HO Venter JC Essential genes of a minimal bacterium Proc Natl Acad Sci U S A 2006/01/13 2006 103 2 425-430 1324956 16407165 10.1073/pnas.0510013103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.2
, pp. 425-430
-
-
Glass, J.I.1
Assad-Garcia, N.2
Alperovich, N.3
Yooseph, S.4
Lewis, M.R.5
Maruf, M.6
Hutchison III, C.A.7
Smith, H.O.8
Venter, J.C.9
-
5
-
-
0035931097
-
Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues"
-
11773595
-
Butte AJ Dzau VJ Glueck SB Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues" Physiol Genomics 2001 7 2 95-96 11773595
-
(2001)
Physiol Genomics
, vol.7
, Issue.2
, pp. 95-96
-
-
Butte, A.J.1
Dzau, V.J.2
Glueck, S.B.3
-
6
-
-
0034720002
-
Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes
-
11015593
-
Warrington JA Nair A Mahadevappa M Tsyganskaya M Comparison of human adult and fetal expression and identification of 535 housekeeping/ maintenance genes Physiol Genomics 2000 2 3 143-147 11015593
-
(2000)
Physiol Genomics
, vol.2
, Issue.3
, pp. 143-147
-
-
Warrington, J.A.1
Nair, A.2
Mahadevappa, M.3
Tsyganskaya, M.4
-
7
-
-
0035931072
-
A compendium of gene expression in normal human tissues
-
11773596
-
Hsiao LL Dangond F Yoshida T Hong R Jensen RV Misra J Dillon W Lee KF Clark KE Haverty P Weng Z Mutter GL Frosch MP Macdonald ME Milford EL Crum CP Bueno R Pratt RE Mahadevappa M Warrington JA Stephanopoulos G Stephanopoulos G Gullans SR A compendium of gene expression in normal human tissues Physiol Genomics 2001 7 2 97-104 11773596
-
(2001)
Physiol Genomics
, vol.7
, Issue.2
, pp. 97-104
-
-
Hsiao, L.L.1
Dangond, F.2
Yoshida, T.3
Hong, R.4
Jensen, R.V.5
Misra, J.6
Dillon, W.7
Lee, K.F.8
Clark, K.E.9
Haverty, P.10
Weng, Z.11
Mutter, G.L.12
Frosch, M.P.13
Macdonald, M.E.14
Milford, E.L.15
Crum, C.P.16
Bueno, R.17
Pratt, R.E.18
Mahadevappa, M.19
Warrington, J.A.20
Stephanopoulos, G.21
Stephanopoulos, G.22
Gullans, S.R.23
more..
-
8
-
-
0038692119
-
Human housekeeping genes are compact
-
10.1016/S0168-9525(03)00140-9 12850439
-
Eisenberg E Levanon EY Human housekeeping genes are compact Trends Genet 2003 19 7 362-365 12850439
-
(2003)
Trends Genet
, vol.19
, Issue.7
, pp. 362-365
-
-
Eisenberg, E.1
Levanon, E.Y.2
-
9
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
123671 11904358 10.1073/pnas.012025199
-
Su AI Cooke MP Ching KA Hakak Y Walker JR Wiltshire T Orth AP Vega RG Sapinoso LM Moqrich A Patapoutian A Hampton GM Schultz PG Hogenesch JB Large-scale analysis of the human and mouse transcriptomes Proc Natl Acad Sci U S A 2002 99 7 4465-4470 123671 11904358 10.1073/pnas.012025199
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.7
, pp. 4465-4470
-
-
Su, A.I.1
Cooke, M.P.2
Ching, K.A.3
Hakak, Y.4
Walker, J.R.5
Wiltshire, T.6
Orth, A.P.7
Vega, R.G.8
Sapinoso, L.M.9
Moqrich, A.10
Patapoutian, A.11
Hampton, G.M.12
Schultz, P.G.13
Hogenesch, J.B.14
-
10
-
-
4744355710
-
Compactness of human housekeeping genes: Selection for economy or genomic design?
-
10.1016/j.tig.2004.03.006 15109779
-
Vinogradov AE Compactness of human housekeeping genes: Selection for economy or genomic design? Trends Genet 2004 20 5 248-253 10.1016/ j.tig.2004.03.006 15109779
-
(2004)
Trends Genet
, vol.20
, Issue.5
, pp. 248-253
-
-
Vinogradov, A.E.1
-
11
-
-
0345411919
-
Isochores and tissue-specificity
-
212799 12930973 10.1093/nar/gkg699
-
Vinogradov AE Isochores and tissue-specificity Nucleic Acids Res 2003 31 17 5212-5220 212799 12930973 10.1093/nar/gkg699
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.17
, pp. 5212-5220
-
-
Vinogradov, A.E.1
-
12
-
-
1542286776
-
Mammalian housekeeping genes evolve more slowly than tissue-specific genes
-
10.1093/molbev/msh010 14595094
-
Zhang L Li WH Mammalian housekeeping genes evolve more slowly than tissue-specific genes Mol Biol Evol 2004 21 2 236-239 10.1093/molbev/ msh010 14595094
-
(2004)
Mol Biol Evol
, vol.21
, Issue.2
, pp. 236-239
-
-
Zhang, L.1
Li, W.H.2
-
13
-
-
39749149956
-
Housekeeping genes tend to show reduced upstream sequence conservation
-
10.1186/gb-2007-8-7-r140 17626644 2323216
-
Farre D Bellora N Mularoni L Messeguer X Alba MM Housekeeping genes tend to show reduced upstream sequence conservation Genome Biol 2007 8 7 R140 10.1186/gb-2007-8-7-r140 17626644 2323216
-
(2007)
Genome Biol
, vol.8
, Issue.7
-
-
Farre, D.1
Bellora, N.2
Mularoni, L.3
Messeguer, X.4
Alba, M.M.5
-
14
-
-
4444352557
-
Protein domains enriched in mammalian tissue-specific or widely expressed genes
-
10.1016/j.tig.2004.08.002 15363898
-
Lehner B Fraser AG Protein domains enriched in mammalian tissue-specific or widely expressed genes Trends Genet 2004 20 10 468-472 10.1016/ j.tig.2004.08.002 15363898
-
(2004)
Trends Genet
, vol.20
, Issue.10
, pp. 468-472
-
-
Lehner, B.1
Fraser, A.G.2
-
15
-
-
25444499171
-
Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes
-
1173084 15918906 10.1186/1471-2105-6-126
-
Ganapathi M Srivastava P Das Sutar SK Kumar K Dasgupta D Pal Singh G Brahmachari V Brahmachari SK Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes BMC Bioinformatics 2005 6 126 1173084 15918906 10.1186/1471-2105-6-126
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 126
-
-
Ganapathi, M.1
Srivastava, P.2
Das Sutar, S.K.3
Kumar, K.4
Dasgupta, D.5
Pal Singh, G.6
Brahmachari, V.7
Brahmachari, S.K.8
-
16
-
-
33750959359
-
Mining housekeeping genes with a Naive Bayes classifier
-
1635426 2006/11/01 17074078 10.1186/1471-2164-7-277
-
De Ferrari L Aitken S Mining housekeeping genes with a Naive Bayes classifier BMC Genomics 2006/11/01 2006 7 277 1635426 17074078 10.1186/ 1471-2164-7-277
-
(2006)
BMC Genomics
, vol.7
, pp. 277
-
-
De Ferrari, L.1
Aitken, S.2
-
17
-
-
33846937260
-
Repetitive sequence environment distinguishes housekeeping genes
-
1857324 17141428 10.1016/j.gene.2006.09.018
-
Eller CD Regelson M Merriman B Nelson S Horvath S Marahrens Y Repetitive sequence environment distinguishes housekeeping genes Gene 2007 390 1-2 153 165 1857324 17141428 10.1016/j.gene.2006.09.018
-
(2007)
Gene
, vol.390
, Issue.1-2
, pp. 153-165
-
-
Eller, C.D.1
Regelson, M.2
Merriman, B.3
Nelson, S.4
Horvath, S.5
Marahrens, Y.6
-
18
-
-
33344460411
-
Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins
-
1175987 15998445 10.1186/gb-2005-6-7-r56
-
Freilich S Massingham T Bhattacharyya S Ponsting H Lyons PA Freeman TC Thornton JM Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins Genome Biol 2005 6 7 R56 1175987 15998445 10.1186/gb-2005-6-7-r56
-
(2005)
Genome Biol
, vol.6
, Issue.7
-
-
Freilich, S.1
Massingham, T.2
Bhattacharyya, S.3
Ponsting, H.4
Lyons, P.A.5
Freeman, T.C.6
Thornton, J.M.7
-
19
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
395923 15075390 10.1073/pnas.0400782101
-
Su AI Wiltshire T Batalov S Lapp H Ching KA Block D Zhang J Soden R Hayakawa M Kreiman G Cooke MP Walker JR Hogenesch JB A gene atlas of the mouse and human protein-encoding transcriptomes Proc Natl Acad Sci U S A 2004 101 16 6062-6067 395923 15075390 10.1073/pnas.0400782101
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.16
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
Cooke, M.P.11
Walker, J.R.12
Hogenesch, J.B.13
-
20
-
-
34250191844
-
Reactome: A knowledge base of biologic pathways and processes
-
1868929 17367534 10.1186/gb-2007-8-3-r39
-
Vastrik I D'Eustachio P Schmidt E Joshi-Tope G Gopinath G Croft D de Bono B Gillespie M Jassal B Lewis S Matthews L Wu G Birney E Stein L Reactome: A knowledge base of biologic pathways and processes Genome Biol 2007 8 3 R39 1868929 17367534 10.1186/gb-2007-8-3-r39
-
(2007)
Genome Biol
, vol.8
, Issue.3
-
-
Vastrik, I.1
D'Eustachio, P.2
Schmidt, E.3
Joshi-Tope, G.4
Gopinath, G.5
Croft, D.6
de Bono, B.7
Gillespie, M.8
Jassal, B.9
Lewis, S.10
Matthews, L.11
Wu, G.12
Birney, E.13
Stein, L.14
-
21
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
1347464 16381885 10.1093/nar/gkj102
-
Kanehisa M Goto S Hattori M Aoki-Kinoshita KF Itoh M Kawashima S Katayama T Araki M Hirakawa M From genomics to chemical genomics: New developments in KEGG Nucleic Acids Res 2006 34 Database issue D354-7 1347464 16381885 10.1093/nar/gkj102
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
22
-
-
0029846871
-
The general transcription factors of RNA polymerase II
-
10.1101/gad.10.21.2657 1996/11/01 8946909
-
Orphanides G Lagrange T Reinberg D The general transcription factors of RNA polymerase II Genes Dev 1996/11/01 1996 10 21 2657-2683 10.1101/ gad.10.21.2657 8946909
-
(1996)
Genes Dev
, vol.10
, Issue.21
, pp. 2657-2683
-
-
Orphanides, G.1
Lagrange, T.2
Reinberg, D.3
-
23
-
-
0034507632
-
Transcription of eukaryotic protein-coding genes
-
10.1146/annurev.genet.34.1.77 2000/11/28 11092823
-
Lee TI Young RA Transcription of eukaryotic protein-coding genes Annu Rev Genet 2000/11/28 2000 34 77-137 10.1146/annurev.genet.34.1.77 11092823
-
(2000)
Annu Rev Genet
, vol.34
, pp. 77-137
-
-
Lee, T.I.1
Young, R.A.2
-
24
-
-
0033788228
-
The ends of the affair: Capping and polyadenylation
-
10.1038/79583 2000/10/04 11017188
-
Shatkin AJ Manley JL The ends of the affair: Capping and polyadenylation Nat Struct Biol 2000/10/04 2000 7 10 838-842 10.1038/79583 11017188
-
(2000)
Nat Struct Biol
, vol.7
, Issue.10
, pp. 838-842
-
-
Shatkin, A.J.1
Manley, J.L.2
-
25
-
-
0033059981
-
Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
98971 1999/06/05 10357856
-
Zhao J Hyman L Moore C Formation of mRNA 3′ ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis Microbiol Mol Biol Rev 1999/06/05 1999 63 2 405-445 98971 10357856
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, Issue.2
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.3
-
26
-
-
2342505693
-
New perspectives on connecting messenger RNA 3′ end formation to transcription
-
10.1016/j.ceb.2004.03.007 2004/05/18 15145351
-
Proudfoot N New perspectives on connecting messenger RNA 3′ end formation to transcription Curr Opin Cell Biol 2004/05/18 2004 16 3 272-278 10.1016/j.ceb.2004.03.007 15145351
-
(2004)
Curr Opin Cell Biol
, vol.16
, Issue.3
, pp. 272-278
-
-
Proudfoot, N.1
-
27
-
-
0036674269
-
Large-scale proteomic analysis of the human spliceosome
-
186633 2002/08/15 12176931 10.1101/gr.473902
-
Rappsilber J Ryder U Lamond AI Mann M Large-scale proteomic analysis of the human spliceosome Genome Res 2002/08/15 2002 12 8 1231-1245 186633 12176931 10.1101/gr.473902
-
(2002)
Genome Res
, vol.12
, Issue.8
, pp. 1231-1245
-
-
Rappsilber, J.1
Ryder, U.2
Lamond, A.I.3
Mann, M.4
-
28
-
-
0037068447
-
Comprehensive proteomic analysis of the human spliceosome
-
10.1038/nature01031 12226669
-
Zhou Z Licklider LJ Gygi SP Reed R Comprehensive proteomic analysis of the human spliceosome Nature 2002/09/13 2002 419 6903 182-185 10.1038/ nature01031 12226669
-
(2002)
Nature
, vol.419
, Issue.6903
, pp. 182-185
-
-
Zhou, Z.1
Licklider, L.J.2
Gygi, S.P.3
Reed, R.4
-
29
-
-
0042671357
-
Pre-mRNA splicing: Awash in a sea of proteins
-
10.1016/S1097-2765(03)00270-3 12887888
-
Jurica MS Moore MJ Pre-mRNA splicing: Awash in a sea of proteins Mol Cell 2003/07/31 2003 12 1 5-14 10.1016/S1097-2765(03)00270-3 12887888
-
(2003)
Mol Cell
, vol.12
, Issue.1
, pp. 5-14
-
-
Jurica, M.S.1
Moore, M.J.2
-
30
-
-
0037154964
-
A conserved mRNA export machinery coupled to pre-mRNA splicing
-
10.1016/S0092-8674(02)00627-X 2002/03/23 11909523
-
Reed R Hurt E A conserved mRNA export machinery coupled to pre-mRNA splicing Cell 2002/03/23 2002 108 4 523-531 10.1016/ S0092-8674(02)00627-X 11909523
-
(2002)
Cell
, vol.108
, Issue.4
, pp. 523-531
-
-
Reed, R.1
Hurt, E.2
-
31
-
-
17044415652
-
Modularity within the architecture of the nuclear pore complex
-
10.1016/j.sbi.2005.03.003 15837182
-
Schwartz TU Modularity within the architecture of the nuclear pore complex Curr Opin Struct Biol 2005/04/20 2005 15 2 221-226 10.1016/ j.sbi.2005.03.003 15837182
-
(2005)
Curr Opin Struct Biol
, vol.15
, Issue.2
, pp. 221-226
-
-
Schwartz, T.U.1
-
32
-
-
33744967486
-
Dynamic nuclear pore complexes: Life on the edge
-
10.1016/j.cell.2006.05.027 2006/06/17 16777596
-
Tran EJ Wente SR Dynamic nuclear pore complexes: Life on the edge Cell 2006/06/17 2006 125 6 1041-1053 10.1016/j.cell.2006.05.027 16777596
-
(2006)
Cell
, vol.125
, Issue.6
, pp. 1041-1053
-
-
Tran, E.J.1
Wente, S.R.2
-
33
-
-
3943080710
-
The molecular mechanics of eukaryotic translation
-
10.1146/annurev.biochem.73.030403.080419 15189156 2004/06/11 15189156
-
Kapp LD Lorsch JR The molecular mechanics of eukaryotic translation Annu Rev Biochem 2004/06/11 2004 73 657-704 10.1146/ annurev.biochem.73.030403.080419 15189156
-
(2004)
Annu Rev Biochem
, vol.73
, pp. 657-704
-
-
Kapp, L.D.1
Lorsch, J.R.2
-
34
-
-
0036125672
-
The human ribosomal protein genes: Sequencing and comparative analysis of 73 genes
-
155282 11875025 10.1101/gr.214202
-
Yoshihama M Uechi T Asakawa S Kawasaki K Kato S Higa S Maeda N Minoshima S Tanaka T Shimizu N Kenmochi N The human ribosomal protein genes: sequencing and comparative analysis of 73 genes Genome Res 2002/03/05 2002 12 3 379-390 155282 11875025 10.1101/gr.214202
-
(2002)
Genome Res
, vol.12
, Issue.3
, pp. 379-390
-
-
Yoshihama, M.1
Uechi, T.2
Asakawa, S.3
Kawasaki, K.4
Kato, S.5
Higa, S.6
Maeda, N.7
Minoshima, S.8
Tanaka, T.9
Shimizu, N.10
Kenmochi, N.11
-
35
-
-
0036083396
-
The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction
-
2002/03/28 373-428 11917093
-
Glickman MH Ciechanover A The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction Physiol Rev 2002/03/28 2002 82 2 373-428 11917093
-
(2002)
Physiol Rev
, vol.82
, Issue.2
, pp. 373-428
-
-
Glickman, M.H.1
Ciechanover, A.2
-
36
-
-
34249098071
-
Mammalian RNA polymerase II core promoters: Insights from genome-wide studies
-
10.1038/nrg2026 2007/05/09 17486122
-
Sandelin A Carninci P Lenhard B Ponjavic J Hayashizaki Y Hume DA Mammalian RNA polymerase II core promoters: Insights from genome-wide studies Nat Rev Genet 2007/05/09 2007 8 6 424-436 10.1038/nrg2026 17486122
-
(2007)
Nat Rev Genet
, vol.8
, Issue.6
, pp. 424-436
-
-
Sandelin, A.1
Carninci, P.2
Lenhard, B.3
Ponjavic, J.4
Hayashizaki, Y.5
Hume, D.A.6
-
37
-
-
44349127575
-
Modeling transcriptome based on transcript-sampling data
-
2243018 2008/02/21 18286206 10.1371/journal.pone.0001659
-
Zhu J He F Wang J Yu J Modeling transcriptome based on transcript-sampling data PLoS ONE 2008/02/21 2008 3 2 e1659 2243018 18286206 10.1371/journal.pone.0001659
-
(2008)
PLoS ONE
, vol.3
, Issue.2
-
-
Zhu, J.1
He, F.2
Wang, J.3
Yu, J.4
-
38
-
-
31444431754
-
Reliability and reproducibility issues in DNA microarray measurements
-
10.1016/j.tig.2005.12.005 16380191 2386979
-
Draghici S Khatri P Eklund AC Szallasi Z Reliability and reproducibility issues in DNA microarray measurements Trends Genet 2006 22 2 101-109 10.1016/j.tig.2005.12.005 16380191 2386979
-
(2006)
Trends Genet
, vol.22
, Issue.2
, pp. 101-109
-
-
Draghici, S.1
Khatri, P.2
Eklund, A.C.3
Szallasi, Z.4
-
39
-
-
0347363608
-
Interrogating the transcriptome
-
10.1016/j.tibtech.2003.11.002 14690619
-
Ruan Y Le Ber P Ng HH Liu ET Interrogating the transcriptome Trends Biotechnol 2004 22 1 23-30 10.1016/j.tibtech.2003.11.00 14690619
-
(2004)
Trends Biotechnol
, vol.22
, Issue.1
, pp. 23-30
-
-
Ruan, Y.1
Le Ber, P.2
Ng, H.H.3
Liu, E.T.4
-
40
-
-
23644460630
-
Tag-based approaches for transcriptome research and genome annotation
-
10.1038/nmeth768 15973418
-
Harbers M Carninci P Tag-based approaches for transcriptome research and genome annotation Nat Methods 2005 2 7 495-502 10.1038/nmeth768 15973418
-
(2005)
Nat Methods
, vol.2
, Issue.7
, pp. 495-502
-
-
Harbers, M.1
Carninci, P.2
-
41
-
-
33746207763
-
Multiplex sequencing of paired-end ditags (MS-PET): A strategy for the ultra-high-throughput analysis of transcriptomes and genomes
-
1524903 16840528 10.1093/nar/gkl444
-
Ng P Tan JJ Ooi HS Lee YL Chiu KP Fullwood MJ Srinivasan KG Perbost C Du L Sung WK Wei CL Ruan Y Multiplex sequencing of paired-end ditags (MS-PET): A strategy for the ultra-high-throughput analysis of transcriptomes and genomes Nucleic Acids Res 2006 34 12 e84 1524903 16840528 10.1093/nar/gkl444
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.12
-
-
Ng, P.1
Tan, J.J.2
Ooi, H.S.3
Lee, Y.L.4
Chiu, K.P.5
Fullwood, M.J.6
Srinivasan, K.G.7
Perbost, C.8
Du, L.9
Sung, W.K.10
Wei, C.L.11
Ruan, Y.12
-
42
-
-
33747322165
-
Tagging mammalian transcription complexity
-
10.1016/j.tig.2006.07.003 2006/07/25 16859803
-
Carninci P Tagging mammalian transcription complexity Trends Genet 2006/ 07/25 2006 22 9 501-510 10.1016/j.tig.2006.07.003 16859803
-
(2006)
Trends Genet
, vol.22
, Issue.9
, pp. 501-510
-
-
Carninci, P.1
-
43
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
10.1038/nrg2083 2007/05/09 17486121
-
Kapranov P Willingham AT Gingeras TR Genome-wide transcription and the implications for genomic organization Nat Rev Genet 2007/05/09 2007 8 6 413-423 10.1038/nrg2083 17486121
-
(2007)
Nat Rev Genet
, vol.8
, Issue.6
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
-
44
-
-
34250308428
-
Origin of phenotypes: Genes and transcripts
-
10.1101/gr.6525007 2007/06/15 17567989
-
Gingeras TR Origin of phenotypes: Genes and transcripts Genome Res 2007/ 06/15 2007 17 6 682-690 10.1101/gr.6525007 17567989
-
(2007)
Genome Res
, vol.17
, Issue.6
, pp. 682-690
-
-
Gingeras, T.R.1
-
45
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
187518 2002/04/05 11932250 10.1101/gr.229202. Article published online before March 2002
-
Kent WJ BLAT - the BLAST-like alignment tool Genome Res 2002/04/05 2002 12 4 656-664 187518 11932250 10.1101/gr.229202. Article published online before March 2002
-
(2002)
Genome Res
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.J.1
-
46
-
-
33846078622
-
The UCSC genome browser database: Update 2007
-
1669757 Database issue 17142222 10.1093/nar/gkl928
-
Kuhn RM Karolchik D Zweig AS Trumbower H Thomas DJ Thakkapallayil A Sugnet CW Stanke M Smith KE Siepel A Rosenbloom KR Rhead B Raney BJ Pohl A Pedersen JS Hsu F Hinrichs AS Harte RA Diekhans M Clawson H Bejerano G Barber GP Baertsch R Haussler D Kent WJ The UCSC genome browser database: Update 2007 Nucleic Acids Res 2007 35 Database issue D668-73 1669757 17142222 10.1093/nar/gkl928
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kuhn, R.M.1
Karolchik, D.2
Zweig, A.S.3
Trumbower, H.4
Thomas, D.J.5
Thakkapallayil, A.6
Sugnet, C.W.7
Stanke, M.8
Smith, K.E.9
Siepel, A.10
Rosenbloom, K.R.11
Rhead, B.12
Raney, B.J.13
Pohl, A.14
Pedersen, J.S.15
Hsu, F.16
Hinrichs, A.S.17
Harte, R.A.18
Diekhans, M.19
Clawson, H.20
Bejerano, G.21
Barber, G.P.22
Baertsch, R.23
Haussler, D.24
Kent, W.J.25
more..
-
47
-
-
0034161344
-
The cancer genome anatomy project: Building an annotated gene index
-
10.1016/S0168-9525(99)01937-X 10689348
-
Strausberg RL Buetow KH Emmert-Buck MR Klausner RD The cancer genome anatomy project: Building an annotated gene index Trends Genet 2000 16 3 103-106 10.1016/S0168-9525(99)01937-X 10689348
-
(2000)
Trends Genet
, vol.16
, Issue.3
, pp. 103-106
-
-
Strausberg, R.L.1
Buetow, K.H.2
Emmert-Buck, M.R.3
Klausner, R.D.4
-
48
-
-
0037252705
-
Database resources of the National Center for Biotechnology
-
165480 12519941 10.1093/nar/gkg033
-
Wheeler DL Church DM Federhen S Lash AE Madden TL Pontius JU Schuler GD Schriml LM Sequeira E Tatusova TA Wagner L Database resources of the National Center for Biotechnology Nucleic Acids Res 2003 31 1 28-33 165480 12519941 10.1093/nar/gkg033
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 28-33
-
-
Wheeler, D.L.1
Church, D.M.2
Federhen, S.3
Lash, A.E.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Sequeira, E.9
Tatusova, T.A.10
Wagner, L.11
-
49
-
-
33846064113
-
NCBI GEO: Mining tens of millions of expression profiles - Database and tools update
-
1669752 2006/11/14 17099226 10.1093/nar/gkl887
-
Barrett T Troup DB Wilhite SE Ledoux P Rudnev D Evangelista C Kim IF Soboleva A Tomashevsky M Edgar R NCBI GEO: Mining tens of millions of expression profiles - database and tools update Nucleic Acids Res 2006/ 11/14 2007 35 Database issue D760-5 1669752 17099226 10.1093/nar/gkl887
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
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