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Volumn 11, Issue 1, 2011, Pages 38-45

Artificial restriction DNA cutters to promote homologous recombination in human cells

Author keywords

Artificial restriction DNA cutter; Cerium; Double strand break; Genome manipulation; Homologous recombination; Peptide nucleic acid

Indexed keywords

DNA; DOUBLE STRANDED DNA; EDETIC ACID; PEPTIDE NUCLEIC ACID;

EID: 79951715043     PISSN: 15665232     EISSN: None     Source Type: Journal    
DOI: 10.2174/156652311794520094     Document Type: Article
Times cited : (25)

References (50)
  • 2
    • 0028237305 scopus 로고
    • Expression of a site-specificendonuclease stimulates homologous recombination in mammaliancells
    • Rouet P, Smih F, Jasin M. Expression of a site-specificendonuclease stimulates homologous recombination in mammaliancells. Proc Natl Acad Sci U S A 1994; 91: 6064-8.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 6064-6068
    • Rouet, P.1    Smih, F.2    Jasin, M.3
  • 3
    • 0038268049 scopus 로고    scopus 로고
    • A novel engineeredmeganuclease induces homologous recombination in yeast and mammalian cells
    • Epinat JC, Arnould S, Chames P, et al. A novel engineeredmeganuclease induces homologous recombination in yeast and mammalian cells. Nucleic Acids Res 2003; 31: 2952-62.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2952-2962
    • Epinat, J.C.1    Arnould, S.2    Chames, P.3
  • 4
    • 28944449341 scopus 로고    scopus 로고
    • Engineering of large numbersof highly specific homing endonucleases that induce recombinationon novel DNA targets
    • Arnould S, Chames P, Perez C, et al. Engineering of large numbersof highly specific homing endonucleases that induce recombinationon novel DNA targets. J Mol Biol 2006; 355: 443-58.
    • (2006) J Mol Biol , vol.355 , pp. 443-458
    • Arnould, S.1    Chames, P.2    Perez, C.3
  • 5
    • 34447109864 scopus 로고    scopus 로고
    • Engineered I-Crelderivatives cleaving sequences from the human XPC gene caninduce highly efficient gene correction in mammalian cells
    • Arnould S, Perez C, Cabaniols JP, et al. Engineered I-Crelderivatives cleaving sequences from the human XPC gene caninduce highly efficient gene correction in mammalian cells. J MolBiol 2007; 371: 49-65.
    • (2007) J MolBiol , vol.371 , pp. 49-65
    • Arnould, S.1    Perez, C.2    Cabaniols, J.P.3
  • 6
    • 70349407359 scopus 로고    scopus 로고
    • Efficient targeting of a SCIDgene by an engineered single-chain homing endonuclease
    • Grizot S, Smith J, Daboussi F, et al. Efficient targeting of a SCIDgene by an engineered single-chain homing endonuclease. NucleicAcids Res 2009; 37: 5405-19.
    • (2009) NucleicAcids Res , vol.37 , pp. 5405-5419
    • Grizot, S.1    Smith, J.2    Daboussi, F.3
  • 7
    • 0038523969 scopus 로고    scopus 로고
    • Chimeric nucleases stimulate genetargeting in human cells
    • Porteus MH, Baltimore D. Chimeric nucleases stimulate genetargeting in human cells. Science 2003; 300: 763.
    • (2003) Science , vol.300 , pp. 763
    • Porteus, M.H.1    Baltimore, D.2
  • 8
    • 18944373328 scopus 로고    scopus 로고
    • Highly efficient endogenoushuman gene correction using designed zinc-finger nucleases
    • Urnov FD, Miller JC, Lee YL, et al. Highly efficient endogenoushuman gene correction using designed zinc-finger nucleases. Nature 2005; 435: 646-51.
    • (2005) Nature , vol.435 , pp. 646-651
    • Urnov, F.D.1    Miller, J.C.2    Lee, Y.L.3
  • 9
    • 35948946526 scopus 로고    scopus 로고
    • Gene editing inhuman stem cells using zinc finger nucleases and integrasedefectivelentiviral vector delivery
    • Lombardo A, Genovese P, Beausejour CM, et al. Gene editing inhuman stem cells using zinc finger nucleases and integrasedefectivelentiviral vector delivery. Nat Biotechnol 2007; 25: 1298-306.
    • (2007) Nat Biotechnol , vol.25 , pp. 1298-1306
    • Lombardo, A.1    Genovese, P.2    Beausejour, C.M.3
  • 10
    • 33847682924 scopus 로고    scopus 로고
    • Targeted gene addition into aspecified location in the human genome using designed zinc fingernucleases
    • Moehle EA, Rock JM, Lee YL, et al. Targeted gene addition into aspecified location in the human genome using designed zinc fingernucleases. Proc Natl Acad Sci U S A 2007; 104: 3055-60.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 3055-3060
    • Moehle, E.A.1    Rock, J.M.2    Lee, Y.L.3
  • 11
    • 66249147273 scopus 로고    scopus 로고
    • Precise genomemodification in the crop species Zea mays using zinc-fingernucleases
    • Shukla VK, Doyon Y, Miller JC, et al. Precise genomemodification in the crop species Zea mays using zinc-fingernucleases. Nature 2009; 459: 437-41.
    • (2009) Nature , vol.459 , pp. 437-441
    • Shukla, V.K.1    Doyon, Y.2    Miller, J.C.3
  • 12
    • 70249114821 scopus 로고    scopus 로고
    • Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zincfingernucleases
    • Hockemeyer D, Soldner F, Beard C, et al. Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zincfingernucleases. Nat Biotechnol 2009; 27: 851-7.
    • (2009) Nat Biotechnol , vol.27 , pp. 851-857
    • Hockemeyer, D.1    Soldner, F.2    Beard, C.3
  • 13
    • 69049104003 scopus 로고    scopus 로고
    • Targetedmanipulation of mammalian genomes using designed zinc fingernucleases
    • Kandavelou K, Ramalingam S, London V, et al. Targetedmanipulation of mammalian genomes using designed zinc fingernucleases. Biochem Biophys Res Commun 2009; 388: 56-61.
    • (2009) Biochem Biophys Res Commun , vol.388 , pp. 56-61
    • Kandavelou, K.1    Ramalingam, S.2    London, V.3
  • 14
    • 77950521498 scopus 로고    scopus 로고
    • Zinc-fingernuclease-induced gene repair with oligodeoxynucleotides: Wantedand unwanted target locus modifications
    • Radecke S, Radecke F, Cathomen T, Schwarz K. Zinc-fingernuclease-induced gene repair with oligodeoxynucleotides: wantedand unwanted target locus modifications. Mol Ther 2010; 18: 743-53.
    • (2010) Mol Ther , vol.18 , pp. 743-753
    • Radecke, S.1    Radecke, F.2    Cathomen, T.3    Schwarz, K.4
  • 15
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
    • Chevalier BS, Stoddard BL. Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res 2001; 29: 3757-74.
    • (2001) Nucleic Acids Res , vol.29 , pp. 3757-3774
    • Chevalier, B.S.1    Stoddard, B.L.2
  • 16
    • 33644756595 scopus 로고    scopus 로고
    • Homing endonuclease structure and function
    • Stoddard BL. Homing endonuclease structure and function. Q RevBiophys 2005; 38: 49-95.
    • (2005) Q RevBiophys , vol.38 , pp. 49-95
    • Stoddard, B.L.1
  • 17
    • 33847246298 scopus 로고    scopus 로고
    • Meganucleases and DNA double-strandbreak-induced recombination: Perspectives for gene therapy
    • Paques F, Duchateau P. Meganucleases and DNA double-strandbreak-induced recombination: Perspectives for gene therapy. CurrGene Ther 2007; 7: 49-66.
    • (2007) CurrGene Ther , vol.7 , pp. 49-66
    • Paques, F.1    Duchateau, P.2
  • 18
    • 23444441147 scopus 로고    scopus 로고
    • Gene targeting using zinc finger nucleases
    • Porteus MH, Carroll D. Gene targeting using zinc finger nucleases. Nat Biotechnol 2005; 23: 967-73.
    • (2005) Nat Biotechnol , vol.23 , pp. 967-973
    • Porteus, M.H.1    Carroll, D.2
  • 19
    • 45749145124 scopus 로고    scopus 로고
    • Zinc-finger nucleases: The next generationemerges
    • Cathomen T, Joung JK. Zinc-finger nucleases: the next generationemerges. Mol Ther 2008; 16: 1200-7.
    • (2008) Mol Ther , vol.16 , pp. 1200-1207
    • Cathomen, T.1    Joung, J.K.2
  • 20
    • 77952296680 scopus 로고    scopus 로고
    • Zinc finger nucleasetechnology heralds a new era in mammalian transgenesis
    • Le Provost F, Lillico S, Passet B, et al. Zinc finger nucleasetechnology heralds a new era in mammalian transgenesis. TrendsBiotechnol 2010; 28: 134-41.
    • (2010) TrendsBiotechnol , vol.28 , pp. 134-141
    • Le Provost, F.1    Lillico, S.2    Passet, B.3
  • 21
    • 0023619361 scopus 로고
    • Sequence-specific cleavage of doublehelical DNA by triple helix formation
    • Moser HE, Dervan PB. Sequence-specific cleavage of doublehelical DNA by triple helix formation. Science 1987; 238: 645-50.
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 22
    • 0024802642 scopus 로고
    • Sequencespecificrecognition and cleavage of duplex DNA via triple-helixformation by oligonucleotides covalently linked to aphenanthroline-copper chelate
    • François JC, Saison-Behmoaras T, Barbier C, et al. Sequencespecificrecognition and cleavage of duplex DNA via triple-helixformation by oligonucleotides covalently linked to aphenanthroline-copper chelate. Proc Natl Acad Sci U S A 1989; 86: 9702-6.
    • (1989) Proc Natl Acad Sci U S A , vol.86 , pp. 9702-9706
    • François, J.C.1    Saison-Behmoaras, T.2    Barbier, C.3
  • 23
    • 0024596987 scopus 로고
    • Sequence-targeted cleavage of single-stranded and double-stranded DNA by oligothymidylates covalently linked to 1,10-phenanthroline
    • François JC, Saison-Behmoaras T, Chassignol M, Thuong, NT, Helene C. Sequence-targeted cleavage of single-stranded and double-stranded DNA by oligothymidylates covalently linked to 1,10-phenanthroline. J Biol Chem 1989; 264: 5891-8.
    • (1989) J Biol Chem , vol.264 , pp. 5891-5898
    • François, J.C.1    Saison-Behmoaras, T.2    Chassignol, M.3    Thuong, N.T.4    Helene, C.5
  • 24
    • 0030953342 scopus 로고    scopus 로고
    • Recognition of seven base pairsequences in the minor groove of DNA by ten-ring pyrroleimidazolepolyamide hairpins
    • Turner JM, Baird EE, Dervan PB. Recognition of seven base pairsequences in the minor groove of DNA by ten-ring pyrroleimidazolepolyamide hairpins. J Am Chem Soc 1997; 119: 7636-44.
    • (1997) J Am Chem Soc , vol.119 , pp. 7636-7644
    • Turner, J.M.1    Baird, E.E.2    Dervan, P.B.3
  • 25
    • 0030813474 scopus 로고    scopus 로고
    • Orientation preferences of pyrroleimidazolepolyamides in the minor groove of DNA
    • White S, Baird EE, Dervan PB. Orientation preferences of pyrroleimidazolepolyamides in the minor groove of DNA. J Am ChemSoc 1997; 119: 8756-65.
    • (1997) J Am ChemSoc , vol.119 , pp. 8756-8765
    • White, S.1    Baird, E.E.2    Dervan, P.B.3
  • 26
    • 0000739713 scopus 로고    scopus 로고
    • Recognition of 16 base pairs inthe minor groove of DNA by a pyrrole-imidazole polyamide dimer
    • Trauger JW, Baird EE, Dervan PB. Recognition of 16 base pairs inthe minor groove of DNA by a pyrrole-imidazole polyamide dimer. J Am Chem Soc 1998; 120: 3534-5.
    • (1998) J Am Chem Soc , vol.120 , pp. 3534-3535
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 27
    • 0034709420 scopus 로고    scopus 로고
    • Strand selective cleavage of DNA bydiastereomers of hairpin polyamide-seco-CBI conjugates
    • Chang AY, Dervan PB. Strand selective cleavage of DNA bydiastereomers of hairpin polyamide-seco-CBI conjugates. J AmChem Soc 2000; 122: 4856-64.
    • (2000) J AmChem Soc , vol.122 , pp. 4856-4864
    • Chang, A.Y.1    Dervan, P.B.2
  • 28
    • 46349108275 scopus 로고    scopus 로고
    • Sequence-specific DNAcleavage mediated by bipyridine polyamide conjugates
    • Simon P, Cannata F, Perrouault L, et al. Sequence-specific DNAcleavage mediated by bipyridine polyamide conjugates. NucleicAcids Res 2008; 36: 3531-8.
    • (2008) NucleicAcids Res , vol.36 , pp. 3531-3538
    • Simon, P.1    Cannata, F.2    Perrouault, L.3
  • 29
    • 0027256844 scopus 로고
    • Sequence selective double-strand DNA cleavage bypeptide nucleic acid (PNA) targeting using nuclease S1
    • Demidov V, Frank-Kamenetskii MD, Egholm M, Buchardt O, Nielsen PE. Sequence selective double-strand DNA cleavage bypeptide nucleic acid (PNA) targeting using nuclease S1. NucleicAcids Res 1993; 21: 2103-7.
    • (1993) NucleicAcids Res , vol.21 , pp. 2103-2107
    • Demidov, V.1    Frank-Kamenetskii, M.D.2    Egholm, M.3    Buchardt, O.4    Nielsen, P.E.5
  • 30
    • 0032254537 scopus 로고    scopus 로고
    • Progress towards synthetic enzymes forphosphoester hydrolysis
    • Komiyama M, Sumaoka J. Progress towards synthetic enzymes forphosphoester hydrolysis. Curr Opin Chem Biol 1998; 2: 751-7.
    • (1998) Curr Opin Chem Biol , vol.2 , pp. 751-757
    • Komiyama, M.1    Sumaoka, J.2
  • 31
    • 0032090901 scopus 로고    scopus 로고
    • Toward the development of metal-basedsynthetic nucleases and peptidases: A rationale and progress reportin applying the principles of coordination chemistry
    • Hegg EL, Burstyn JN. Toward the development of metal-basedsynthetic nucleases and peptidases: a rationale and progress reportin applying the principles of coordination chemistry. Coord ChemRev 1998; 173: 133-65.
    • (1998) Coord ChemRev , vol.173 , pp. 133-165
    • Hegg, E.L.1    Burstyn, J.N.2
  • 32
    • 0032816585 scopus 로고    scopus 로고
    • Recent studies of nucleophilic, general-acid, and metal ion catalysis of phosphate diester hydrolysis
    • Blasko A, Bruice TC. Recent studies of nucleophilic, general-acid, and metal ion catalysis of phosphate diester hydrolysis. Acc ChemRes 1999; 32: 475-84.
    • (1999) Acc ChemRes , vol.32 , pp. 475-484
    • Blasko, A.1    Bruice, T.C.2
  • 33
    • 0032839614 scopus 로고    scopus 로고
    • Structure and nucleaseactivity of simple dinuclear complexes: Quantitative dissection of the role of metal ions
    • Williams NH, Takasaki B, Wall M, Chin J. Structure and nucleaseactivity of simple dinuclear complexes: quantitative dissection of the role of metal ions. Acc Chem Res 1999; 32: 485-93.
    • (1999) Acc Chem Res , vol.32 , pp. 485-493
    • Williams, N.H.1    Takasaki, B.2    Wall, M.3    Chin, J.4
  • 34
    • 0032717110 scopus 로고    scopus 로고
    • DNA hydrolysis by inorganic catalysts
    • Ott R, Krämer R. DNA hydrolysis by inorganic catalysts. ApplMicrobiol Biotechnol 1999; 52: 761-7.
    • (1999) ApplMicrobiol Biotechnol , vol.52 , pp. 761-767
    • Ott, R.1    Krämer, R.2
  • 35
    • 0032750064 scopus 로고    scopus 로고
    • Hydrolysis of phosphates, esters and related substratesby models of biological catalysts
    • Bashkin JK. Hydrolysis of phosphates, esters and related substratesby models of biological catalysts. Curr Opin Chem Biol 1999; 3: 752-8.
    • (1999) Curr Opin Chem Biol , vol.3 , pp. 752-758
    • Bashkin, J.K.1
  • 36
    • 0034852790 scopus 로고    scopus 로고
    • Catalytic hydrolysis of DNA by metalions and complexes
    • Sreedhara A, Cowan JA. Catalytic hydrolysis of DNA by metalions and complexes. J Biol Inorg Chem 2001; 6: 337-47.
    • (2001) J Biol Inorg Chem , vol.6 , pp. 337-347
    • Sreedhara, A.1    Cowan, J.A.2
  • 37
    • 0035313441 scopus 로고    scopus 로고
    • Lanthanide-mediated DNA hydrolysis
    • Franklin SJ. Lanthanide-mediated DNA hydrolysis. Curr OpinChem Biol 2001; 5: 201-8.
    • (2001) Curr OpinChem Biol , vol.5 , pp. 201-208
    • Franklin, S.J.1
  • 38
    • 1142267465 scopus 로고    scopus 로고
    • DNA hydrolysis promotedby di-and multi-nuclear metal complexes
    • Liu CL, Wang M, Zhang TL, Sun HZ. DNA hydrolysis promotedby di-and multi-nuclear metal complexes. Coord Chem Rev 2004; 248: 147-68.
    • (2004) Coord Chem Rev , vol.248 , pp. 147-168
    • Liu, C.L.1    Wang, M.2    Zhang, T.L.3    Sun, H.Z.4
  • 40
    • 0000170616 scopus 로고
    • DNA hydrolysis by rare earth metalions
    • Matsumoto Y, Komiyama M. DNA hydrolysis by rare earth metalions. Chem Express 1992; 7: 785-8.
    • (1992) Chem Express , vol.7 , pp. 785-788
    • Matsumoto, Y.1    Komiyama, M.2
  • 41
    • 0036778249 scopus 로고    scopus 로고
    • Preferential hydrolysis of gap and bulge sites in DNA by Ce(IV)/EDTA complex
    • Kitamura Y, Komiyama M. Preferential hydrolysis of gap and bulge sites in DNA by Ce(IV)/EDTA complex. Nucleic Acids Res 2002; 30: e102.
    • (2002) Nucleic Acids Res , vol.30
    • Kitamura, Y.1    Komiyama, M.2
  • 42
    • 42049106385 scopus 로고    scopus 로고
    • Artificialrestriction DNA cutter for site-selective scission of double-strandedDNA with tunable scission site and specificity
    • Komiyama M, Aiba Y, Yamamoto Y, Sumaoka J. Artificialrestriction DNA cutter for site-selective scission of double-strandedDNA with tunable scission site and specificity. Nat Protoc 2008; 3: 655-62.
    • (2008) Nat Protoc , vol.3 , pp. 655-662
    • Komiyama, M.1    Aiba, Y.2    Yamamoto, Y.3    Sumaoka, J.4
  • 43
    • 67651162092 scopus 로고    scopus 로고
    • Artificial restriction DNA cutters as newtools for gene manipulation
    • Katada H, Komiyama M. Artificial restriction DNA cutters as newtools for gene manipulation. ChemBioChem 2009; 10: 1279-88.
    • (2009) ChemBioChem , vol.10 , pp. 1279-1288
    • Katada, H.1    Komiyama, M.2
  • 44
    • 34249847680 scopus 로고    scopus 로고
    • Chemical modification of Ce(IV)/EDTA-based artificial restriction DNA cutter for versatilemanipulation of double-stranded DNA
    • Yamamoto Y, Mori M, Aiba Y, et al. Chemical modification of Ce(IV)/EDTA-based artificial restriction DNA cutter for versatilemanipulation of double-stranded DNA. Nucleic Acids Res 2007; 35: e53.
    • (2007) Nucleic Acids Res , vol.35
    • Yamamoto, Y.1    Mori, M.2    Aiba, Y.3
  • 45
    • 0032738421 scopus 로고    scopus 로고
    • Double duplex invasion by peptidenucleic acid: A general principle for sequence-specific targeting of double-stranded DNA
    • Lohse J, Dahl O, Nielsen PE. Double duplex invasion by peptidenucleic acid: a general principle for sequence-specific targeting of double-stranded DNA. Proc Natl Acad Sci U S A 1999; 96: 11804-8.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 11804-11808
    • Lohse, J.1    Dahl, O.2    Nielsen, P.E.3
  • 46
    • 42049094396 scopus 로고    scopus 로고
    • Solid-phasesynthesis of pseudo-complementary peptide nucleic acids
    • Komiyama M, Aiba Y, Ishizuka T, Sumaoka J. Solid-phasesynthesis of pseudo-complementary peptide nucleic acids. NatProtoc 2008; 3: 646-54.
    • (2008) NatProtoc , vol.3 , pp. 646-654
    • Komiyama, M.1    Aiba, Y.2    Ishizuka, T.3    Sumaoka, J.4
  • 47
    • 67849121882 scopus 로고    scopus 로고
    • Origin of high fidelity in target-sequence recognition by PNACe(IV)/EDTA combinations as site-selective DNA cutters
    • Miyajima Y, Ishizuka T, Yamamoto Y, Sumaoka J, Komiyama M. Origin of high fidelity in target-sequence recognition by PNACe(IV)/EDTA combinations as site-selective DNA cutters. J AmChem Soc 2009; 131: 2657-62.
    • (2009) J AmChem Soc , vol.131 , pp. 2657-2662
    • Miyajima, Y.1    Ishizuka, T.2    Yamamoto, Y.3    Sumaoka, J.4    Komiyama, M.5
  • 48
    • 70350690275 scopus 로고    scopus 로고
    • Site-selective scission of human genome by artificial restriction DNA cutter
    • Ito K, Katada H, Shigi N, Komiyama M. Site-selective scission of human genome by artificial restriction DNA cutter. Chem Commun 2009: 6542-4.
    • (2009) Chem Commun , pp. 6542-6544
    • Ito, K.1    Katada, H.2    Shigi, N.3    Komiyama, M.4
  • 49
    • 70350653522 scopus 로고    scopus 로고
    • Homologousrecombination in human cells using artificial restriction DNAcutter
    • Katada H, Chen HJ, Shigi N, Komiyama M. Homologousrecombination in human cells using artificial restriction DNAcutter. Chem Commun 2009: 6545-7.
    • (2009) Chem Commun , pp. 6545-6547
    • Katada, H.1    Chen, H.J.2    Shigi, N.3    Komiyama, M.4
  • 50
    • 75249104343 scopus 로고    scopus 로고
    • Oxidation of anoligonucleotide-bound Ce(III)/multiphosphonate complex for siteselectiveDNA scission
    • Lönnberg T, Aiba Y, Hamano Y, et al. Oxidation of anoligonucleotide-bound Ce(III)/multiphosphonate complex for siteselectiveDNA scission. Chem Eur J 2010; 16: 855-9.
    • (2010) Chem Eur J , vol.16 , pp. 855-859
    • Lönnberg, T.1    Aiba, Y.2    Hamano, Y.3


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