-
1
-
-
0037133946
-
Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes
-
10.1016/S0092-8674(02)00717-1, 12007399
-
Wassarman KM. Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. Cell 2002, 109(2):141-144. 10.1016/S0092-8674(02)00717-1, 12007399.
-
(2002)
Cell
, vol.109
, Issue.2
, pp. 141-144
-
-
Wassarman, K.M.1
-
2
-
-
34247134625
-
The role of small RNAs in quorum sensing
-
10.1016/j.mib.2007.03.009, 17387037
-
Bejerano-Sagie M, Xavier KB. The role of small RNAs in quorum sensing. Curr Opin Microbiol 2007, 10(2):189-198. 10.1016/j.mib.2007.03.009, 17387037.
-
(2007)
Curr Opin Microbiol
, vol.10
, Issue.2
, pp. 189-198
-
-
Bejerano-Sagie, M.1
Xavier, K.B.2
-
3
-
-
33645064277
-
A small RNA inhibits translation of the histone-like protein Hc1 in Chlamydia trachomatis
-
10.1111/j.1365-2958.2005.04949.x, 16390448
-
Grieshaber NA, Grieshaber SS, Fischer ER, Hackstadt T. A small RNA inhibits translation of the histone-like protein Hc1 in Chlamydia trachomatis. Mol Microbiol 2006, 59(2):541-550. 10.1111/j.1365-2958.2005.04949.x, 16390448.
-
(2006)
Mol Microbiol
, vol.59
, Issue.2
, pp. 541-550
-
-
Grieshaber, N.A.1
Grieshaber, S.S.2
Fischer, E.R.3
Hackstadt, T.4
-
4
-
-
27944467332
-
CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae
-
10.1111/j.1365-2958.2005.04902.x, 16262799
-
Lenz DH, Miller MB, Zhu J, Kulkarni RV, Bassler BL. CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae. Mol Microbiol 2005, 58(4):1186-1202. 10.1111/j.1365-2958.2005.04902.x, 16262799.
-
(2005)
Mol Microbiol
, vol.58
, Issue.4
, pp. 1186-1202
-
-
Lenz, D.H.1
Miller, M.B.2
Zhu, J.3
Kulkarni, R.V.4
Bassler, B.L.5
-
5
-
-
0035100798
-
Molecular characterization of global regulatory RNA species that control pathogenicity factors in Erwinia amylovora and Erwinia herbicola pv. gypsophilae
-
10.1128/JB.183.6.1870-1880.2001, 95081, 11222584
-
Ma W, Cui Y, Liu Y, Dumenyo CK, Mukherjee A, Chatterjee AK. Molecular characterization of global regulatory RNA species that control pathogenicity factors in Erwinia amylovora and Erwinia herbicola pv. gypsophilae. J Bacteriol 2001, 183(6):1870-1880. 10.1128/JB.183.6.1870-1880.2001, 95081, 11222584.
-
(2001)
J Bacteriol
, vol.183
, Issue.6
, pp. 1870-1880
-
-
Ma, W.1
Cui, Y.2
Liu, Y.3
Dumenyo, C.K.4
Mukherjee, A.5
Chatterjee, A.K.6
-
6
-
-
11344252474
-
Characterisation of the regulatory RNA RsmB from Pseudomonas aeruginosa PAO1
-
10.1016/j.resmic.2004.07.004, 15636743
-
Burrowes E, Abbas A, O'Neill A, Adams C, O'Gara F. Characterisation of the regulatory RNA RsmB from Pseudomonas aeruginosa PAO1. Res Microbiol 2005, 156(1):7-16. 10.1016/j.resmic.2004.07.004, 15636743.
-
(2005)
Res Microbiol
, vol.156
, Issue.1
, pp. 7-16
-
-
Burrowes, E.1
Abbas, A.2
O'Neill, A.3
Adams, C.4
O'Gara, F.5
-
7
-
-
77958028354
-
Regulatory RNA in bacterial pathogens
-
10.1016/j.chom.2010.06.008, 20638647
-
Papenfort K, Vogel J. Regulatory RNA in bacterial pathogens. Cell Host Microbe 2010, 8(1):116-127. 10.1016/j.chom.2010.06.008, 20638647.
-
(2010)
Cell Host Microbe
, vol.8
, Issue.1
, pp. 116-127
-
-
Papenfort, K.1
Vogel, J.2
-
8
-
-
0035395606
-
Identification of novel small RNAs using comparative genomics and microarrays
-
10.1101/gad.901001, 312727, 11445539
-
Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev 2001, 15(13):1637-1651. 10.1101/gad.901001, 312727, 11445539.
-
(2001)
Genes Dev
, vol.15
, Issue.13
, pp. 1637-1651
-
-
Wassarman, K.M.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
9
-
-
0035806973
-
Computational identification of noncoding RNAs in E. coli by comparative genomics
-
10.1016/S0960-9822(01)00401-8, 11553332
-
Rivas E, Klein RJ, Jones TA, Eddy SR. Computational identification of noncoding RNAs in E. coli by comparative genomics. Curr Biol 2001, 11(17):1369-1373. 10.1016/S0960-9822(01)00401-8, 11553332.
-
(2001)
Curr Biol
, vol.11
, Issue.17
, pp. 1369-1373
-
-
Rivas, E.1
Klein, R.J.2
Jones, T.A.3
Eddy, S.R.4
-
10
-
-
0344237410
-
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
-
10.1093/nar/gkg867, 275561, 14602901
-
Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jager JG, Huttenhofer A, Wagner EG. RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res 2003, 31(22):6435-6443. 10.1093/nar/gkg867, 275561, 14602901.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.22
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jager, J.G.5
Huttenhofer, A.6
Wagner, E.G.7
-
11
-
-
14244257879
-
Detection of 5'- and 3'- UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
-
10.1093/nar/gki256, 549416, 15718303
-
Kawano M, Reynolds AA, Miranda-Rios J, Storz G. Detection of 5'- and 3'- UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Nucleic Acids Res 2005, 33(3):1040-1050. 10.1093/nar/gki256, 549416, 15718303.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.3
, pp. 1040-1050
-
-
Kawano, M.1
Reynolds, A.A.2
Miranda-Rios, J.3
Storz, G.4
-
12
-
-
58149139033
-
A rough guide to the non-coding RNA world of Salmonella
-
10.1111/j.1365-2958.2008.06505.x, 19007416
-
Vogel J. A rough guide to the non-coding RNA world of Salmonella. Mol Microbiol 2009, 71(1):1-11. 10.1111/j.1365-2958.2008.06505.x, 19007416.
-
(2009)
Mol Microbiol
, vol.71
, Issue.1
, pp. 1-11
-
-
Vogel, J.1
-
13
-
-
33746533172
-
Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNA Predict2
-
10.1093/nar/gkl453, 1524904, 16870723
-
Livny J, Brencic A, Lory S, Waldor MK. Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNA Predict2. Nucleic Acids Res 2006, 34(12):3484-3493. 10.1093/nar/gkl453, 1524904, 16870723.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.12
, pp. 3484-3493
-
-
Livny, J.1
Brencic, A.2
Lory, S.3
Waldor, M.K.4
-
14
-
-
26444600764
-
Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains
-
10.1073/pnas.0503838102, 1242290, 16183745
-
Pichon C, Felden B. Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains. Proc Natl Acad Sci USA 2005, 102(40):14249-14254. 10.1073/pnas.0503838102, 1242290, 16183745.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.40
, pp. 14249-14254
-
-
Pichon, C.1
Felden, B.2
-
15
-
-
36148952518
-
Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics
-
10.1111/j.1365-2958.2007.05978.x, 2780559, 17971083
-
del Val C, Rivas E, Torres-Quesada O, Toro N, Jimenez-Zurdo JI. Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics. Mol Microbiol 2007, 66(5):1080-1091. 10.1111/j.1365-2958.2007.05978.x, 2780559, 17971083.
-
(2007)
Mol Microbiol
, vol.66
, Issue.5
, pp. 1080-1091
-
-
del Val, C.1
Rivas, E.2
Torres-Quesada, O.3
Toro, N.4
Jimenez-Zurdo, J.I.5
-
16
-
-
33847371621
-
Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
-
10.1093/nar/gkl1096, 1807966, 17259222
-
Mandin P, Repoila F, Vergassola M, Geissmann T, Cossart P. Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res 2007, 35(3):962-974. 10.1093/nar/gkl1096, 1807966, 17259222.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.3
, pp. 962-974
-
-
Mandin, P.1
Repoila, F.2
Vergassola, M.3
Geissmann, T.4
Cossart, P.5
-
17
-
-
41749103319
-
Small non-coding RNAs in Caulobacter crescentus
-
10.1111/j.1365-2958.2008.06172.x, 18373523
-
Landt SG, Abeliuk E, McGrath PT, Lesley JA, McAdams HH, Shapiro L. Small non-coding RNAs in Caulobacter crescentus. Mol Microbiol 2008, 68(3):600-614. 10.1111/j.1365-2958.2008.06172.x, 18373523.
-
(2008)
Mol Microbiol
, vol.68
, Issue.3
, pp. 600-614
-
-
Landt, S.G.1
Abeliuk, E.2
McGrath, P.T.3
Lesley, J.A.4
McAdams, H.H.5
Shapiro, L.6
-
18
-
-
67651225588
-
Identification of small RNAs in Mycobacterium tuberculosis
-
10.1111/j.1365-2958.2009.06777.x, 2764107, 19555452
-
Arnvig KB, Young DB. Identification of small RNAs in Mycobacterium tuberculosis. Mol Microbiol 2009, 73(3):397-408. 10.1111/j.1365-2958.2009.06777.x, 2764107, 19555452.
-
(2009)
Mol Microbiol
, vol.73
, Issue.3
, pp. 397-408
-
-
Arnvig, K.B.1
Young, D.B.2
-
19
-
-
79951550669
-
Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations
-
Gottesman S, Storz G. Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations. Cold Spring Harb Perspect Biol 2010,
-
(2010)
Cold Spring Harb Perspect Biol
-
-
Gottesman, S.1
Storz, G.2
-
20
-
-
60149089144
-
Regulatory RNAs in bacteria
-
10.1016/j.cell.2009.01.043, 19239884
-
Waters LS, Storz G. Regulatory RNAs in bacteria. Cell 2009, 136(4):615-628. 10.1016/j.cell.2009.01.043, 19239884.
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
21
-
-
1642565815
-
The bacterial Sm-like protein Hfq: a key player in RNA transactions
-
10.1111/j.1365-2958.2003.03935.x, 15009882
-
Valentin-Hansen P, Eriksen M, Udesen C. The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol Microbiol 2004, 51(6):1525-1533. 10.1111/j.1365-2958.2003.03935.x, 15009882.
-
(2004)
Mol Microbiol
, vol.51
, Issue.6
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
22
-
-
34247158257
-
Mechanism of RNA silencing by Hfq-binding small RNAs
-
10.1016/j.mib.2007.03.010, 17383928
-
Aiba H. Mechanism of RNA silencing by Hfq-binding small RNAs. Curr Opin Microbiol 2007, 10(2):134-139. 10.1016/j.mib.2007.03.010, 17383928.
-
(2007)
Curr Opin Microbiol
, vol.10
, Issue.2
, pp. 134-139
-
-
Aiba, H.1
-
23
-
-
2442645227
-
The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence
-
10.1128/JB.186.11.3355-3362.2004, 415768, 15150220
-
Christiansen JK, Larsen MH, Ingmer H, Sogaard-Andersen L, Kallipolitis BH. The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence. J Bacteriol 2004, 186(11):3355-3362. 10.1128/JB.186.11.3355-3362.2004, 415768, 15150220.
-
(2004)
J Bacteriol
, vol.186
, Issue.11
, pp. 3355-3362
-
-
Christiansen, J.K.1
Larsen, M.H.2
Ingmer, H.3
Sogaard-Andersen, L.4
Kallipolitis, B.H.5
-
24
-
-
0028243445
-
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12
-
10.1111/j.1365-2958.1994.tb00400.x, 7984093
-
Tsui HC, Leung HC, Winkler ME. Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Mol Microbiol 1994, 13(1):35-49. 10.1111/j.1365-2958.1994.tb00400.x, 7984093.
-
(1994)
Mol Microbiol
, vol.13
, Issue.1
, pp. 35-49
-
-
Tsui, H.C.1
Leung, H.C.2
Winkler, M.E.3
-
25
-
-
0032702842
-
The Brucella abortus host factor I (HF-I) protein contributes to stress resistance during stationary phase and is a major determinant of virulence in mice
-
10.1046/j.1365-2958.1999.01629.x, 10564509
-
Robertson GT, Roop RM. The Brucella abortus host factor I (HF-I) protein contributes to stress resistance during stationary phase and is a major determinant of virulence in mice. Mol Microbiol 1999, 34(4):690-700. 10.1046/j.1365-2958.1999.01629.x, 10564509.
-
(1999)
Mol Microbiol
, vol.34
, Issue.4
, pp. 690-700
-
-
Robertson, G.T.1
Roop, R.M.2
-
26
-
-
3142550776
-
Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression
-
10.1111/j.1365-2958.2004.04142.x, 15225327
-
Ding Y, Davis BM, Waldor MK. Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression. Mol Microbiol 2004, 53(1):345-354. 10.1111/j.1365-2958.2004.04142.x, 15225327.
-
(2004)
Mol Microbiol
, vol.53
, Issue.1
, pp. 345-354
-
-
Ding, Y.1
Davis, B.M.2
Waldor, M.K.3
-
27
-
-
0141681868
-
Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1
-
10.1016/S0882-4010(03)00149-9, 14521880
-
Sonnleitner E, Hagens S, Rosenau F, Wilhelm S, Habel A, Jager KE, Blasi U. Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1. Microb Pathog 2003, 35(5):217-228. 10.1016/S0882-4010(03)00149-9, 14521880.
-
(2003)
Microb Pathog
, vol.35
, Issue.5
, pp. 217-228
-
-
Sonnleitner, E.1
Hagens, S.2
Rosenau, F.3
Wilhelm, S.4
Habel, A.5
Jager, K.E.6
Blasi, U.7
-
28
-
-
33845713571
-
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
-
10.1111/j.1365-2958.2006.05489.x, 1810395, 17163975
-
Sittka A, Pfeiffer V, Tedin K, Vogel J. The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol 2007, 63(1):193-217. 10.1111/j.1365-2958.2006.05489.x, 1810395, 17163975.
-
(2007)
Mol Microbiol
, vol.63
, Issue.1
, pp. 193-217
-
-
Sittka, A.1
Pfeiffer, V.2
Tedin, K.3
Vogel, J.4
-
29
-
-
61749088917
-
Bacterial chromosome-encoded small regulatory RNAs
-
10.2217/17460913.4.1.85, 19207102
-
Brantl S. Bacterial chromosome-encoded small regulatory RNAs. Future Microbiol 2009, 4(1):85-103. 10.2217/17460913.4.1.85, 19207102.
-
(2009)
Future Microbiol
, vol.4
, Issue.1
, pp. 85-103
-
-
Brantl, S.1
-
30
-
-
34247099372
-
Regulatory mechanisms employed by cis-encoded antisense RNAs
-
10.1016/j.mib.2007.03.012, 17387036
-
Brantl S. Regulatory mechanisms employed by cis-encoded antisense RNAs. Curr Opin Microbiol 2007, 10(2):102-109. 10.1016/j.mib.2007.03.012, 17387036.
-
(2007)
Curr Opin Microbiol
, vol.10
, Issue.2
, pp. 102-109
-
-
Brantl, S.1
-
31
-
-
13744253238
-
The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice
-
10.1093/nar/gki206, 548351, 15673718
-
Lee BM, Park YJ, Park DS, Kang HW, Kim JG, Song ES, Park IC, Yoon UH, Hahn JH, Koo BS, Lee GB, Kim H, Park HS, Yoon KO, Kim JH, Jung CH, Koh NH, Seo JS, Go SJ. The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice. Nucleic Acids Res 2005, 33(2):577-586. 10.1093/nar/gki206, 548351, 15673718.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.2
, pp. 577-586
-
-
Lee, B.M.1
Park, Y.J.2
Park, D.S.3
Kang, H.W.4
Kim, J.G.5
Song, E.S.6
Park, I.C.7
Yoon, U.H.8
Hahn, J.H.9
Koo, B.S.10
Lee, G.B.11
Kim, H.12
Park, H.S.13
Yoon, K.O.14
Kim, J.H.15
Jung, C.H.16
Koh, N.H.17
Seo, J.S.18
Go, S.J.19
-
32
-
-
30944445669
-
Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity
-
Hirokazu OCHIAI YI, Masaru TAKEYA, Aeni SASAKI A, KAKU H. Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity. JARQ 2005, 39(4):275-287.
-
(2005)
JARQ
, vol.39
, Issue.4
, pp. 275-287
-
-
Hirokazu OCHIAI, Y.I.1
Masaru, T.A.K.E.Y.A.2
Aeni SASAKI, A.3
KAKU, H.4
-
33
-
-
46049099151
-
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
-
10.1186/1471-2164-9-204, 2432079, 18452608
-
Salzberg SL, Sommer DD, Schatz MC, Phillippy AM, Rabinowicz PD, Tsuge S, Furutani A, Ochiai H, Delcher AL, Kelley D, Madupu R, Puiu D, Radune D, Shumway M, Trapnell C, Aparna G, Jha G, Pandey A, Patil PB, Ishihara H, Meyer DF, Szurek B, Verdier V, Koebnik R, Dow JM, Ryan RP, Hirata H, Tsuyumu S, Won Lee S, Seo YS, et al. Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics 2008, 9:204. 10.1186/1471-2164-9-204, 2432079, 18452608.
-
(2008)
BMC Genomics
, vol.9
, pp. 204
-
-
Salzberg, S.L.1
Sommer, D.D.2
Schatz, M.C.3
Phillippy, A.M.4
Rabinowicz, P.D.5
Tsuge, S.6
Furutani, A.7
Ochiai, H.8
Delcher, A.L.9
Kelley, D.10
Madupu, R.11
Puiu, D.12
Radune, D.13
Shumway, M.14
Trapnell, C.15
Aparna, G.16
Jha, G.17
Pandey, A.18
Patil, P.B.19
Ishihara, H.20
Meyer, D.F.21
Szurek, B.22
Verdier, V.23
Koebnik, R.24
Dow, J.M.25
Ryan, R.P.26
Hirata, H.27
Tsuyumu, S.28
Won Lee, S.29
Seo, Y.S.30
more..
-
34
-
-
13444252847
-
Rfam: annotating non-coding RNAs in complete genomes
-
540035, 15608160
-
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res 2005, (33 Database):D121-124. 540035, 15608160.
-
(2005)
Nucleic Acids Res
, Issue.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
35
-
-
67149084593
-
Analysis of CRISPR system function in plant pathogen Xanthomonas oryzae
-
10.1111/j.1574-6968.2009.01626.x, 19459963
-
Semenova E, Nagornykh M, Pyatnitskiy M, Severinov K. Analysis of CRISPR system function in plant pathogen Xanthomonas oryzae. FEMS Microbiol Lett 2009, 296(1):110-116. 10.1111/j.1574-6968.2009.01626.x, 19459963.
-
(2009)
FEMS Microbiol Lett
, vol.296
, Issue.1
, pp. 110-116
-
-
Semenova, E.1
Nagornykh, M.2
Pyatnitskiy, M.3
Severinov, K.4
-
36
-
-
77952342760
-
Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris
-
10.1186/1471-2164-11-316, 2996969, 20482898
-
Jiang RP, Tang DJ, Chen XL, He YQ, Feng JX, Jiang BL, Lu GT, Lin M, Tang JL. Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris. BMC Genomics 2010, 11(1):316. 10.1186/1471-2164-11-316, 2996969, 20482898.
-
(2010)
BMC Genomics
, vol.11
, Issue.1
, pp. 316
-
-
Jiang, R.P.1
Tang, D.J.2
Chen, X.L.3
He, Y.Q.4
Feng, J.X.5
Jiang, B.L.6
Lu, G.T.7
Lin, M.8
Tang, J.L.9
-
37
-
-
77953802392
-
A novel family of plasmid-transferred anti-sense ncRNAs
-
10.4161/rna.7.2.11184, 20220307
-
Findeiss S, Schubert C, Stadler PF, Bonas U. A novel family of plasmid-transferred anti-sense ncRNAs. RNA Biol 2010, 7(2):120-124. 10.4161/rna.7.2.11184, 20220307.
-
(2010)
RNA Biol
, vol.7
, Issue.2
, pp. 120-124
-
-
Findeiss, S.1
Schubert, C.2
Stadler, P.F.3
Bonas, U.4
-
38
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
10.1016/S0960-9822(01)00270-6, 11448770
-
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 2001, 11(12):941-950. 10.1016/S0960-9822(01)00270-6, 11448770.
-
(2001)
Curr Biol
, vol.11
, Issue.12
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.5
Margalit, H.6
Altuvia, S.7
-
39
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
10.1093/nar/27.23.4636, 148753, 10556321
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Improved microbial gene identification with GLIMMER. Nucleic Acids Res 1999, 27(23):4636-4641. 10.1093/nar/27.23.4636, 148753, 10556321.
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.23
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
40
-
-
0035850734
-
Anatomy of Escherichia coli ribosome binding sites
-
10.1006/jmbi.2001.5040, 11601857
-
Shultzaberger RK, Bucheimer RE, Rudd KE, Schneider TD. Anatomy of Escherichia coli ribosome binding sites. J Mol Biol 2001, 313(1):215-228. 10.1006/jmbi.2001.5040, 11601857.
-
(2001)
J Mol Biol
, vol.313
, Issue.1
, pp. 215-228
-
-
Shultzaberger, R.K.1
Bucheimer, R.E.2
Rudd, K.E.3
Schneider, T.D.4
-
41
-
-
52449093583
-
High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs
-
10.1371/journal.pone.0003197, 2527527, 18787707
-
Livny J, Teonadi H, Livny M, Waldor MK. High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs. PLoS One 2008, 3(9):e3197. 10.1371/journal.pone.0003197, 2527527, 18787707.
-
(2008)
PLoS One
, vol.3
, Issue.9
-
-
Livny, J.1
Teonadi, H.2
Livny, M.3
Waldor, M.K.4
-
42
-
-
55549099601
-
Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools
-
10.1099/mic.0.2008/019703-0, 18832323
-
Sonnleitner E, Sorger-Domenigg T, Madej MJ, Findeiss S, Hackermuller J, Huttenhofer A, Stadler PF, Blasi U, Moll I. Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools. Microbiology 2008, 154(10):3175-3187. 10.1099/mic.0.2008/019703-0, 18832323.
-
(2008)
Microbiology
, vol.154
, Issue.10
, pp. 3175-3187
-
-
Sonnleitner, E.1
Sorger-Domenigg, T.2
Madej, M.J.3
Findeiss, S.4
Hackermuller, J.5
Huttenhofer, A.6
Stadler, P.F.7
Blasi, U.8
Moll, I.9
-
43
-
-
58749087362
-
Small non-coding RNAs in Streptomyces coelicolor
-
10.1093/nar/gkn898, 2602773, 19008244
-
Swiercz JP, Bobek J, Bobek J, Haiser HJ, Di Berardo C, Tjaden B, Elliot MA. Small non-coding RNAs in Streptomyces coelicolor. Nucleic Acids Res 2008, 36(22):7240-7251. 10.1093/nar/gkn898, 2602773, 19008244.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.22
, pp. 7240-7251
-
-
Swiercz, J.P.1
Bobek, J.2
Bobek, J.3
Haiser, H.J.4
Di Berardo, C.5
Tjaden, B.6
Elliot, M.A.7
-
44
-
-
75249100904
-
The role of Hfq in bacterial pathogens
-
10.1016/j.mib.2010.01.001, 20080057
-
Chao Y, Vogel J. The role of Hfq in bacterial pathogens. Curr Opin Microbiol 2010, 13(1):24-33. 10.1016/j.mib.2010.01.001, 20080057.
-
(2010)
Curr Opin Microbiol
, vol.13
, Issue.1
, pp. 24-33
-
-
Chao, Y.1
Vogel, J.2
-
45
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
10.1038/nature08756, 20164839
-
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, Sittka A, Chabas S, Reiche K, Hackermuller J, Reinhardt R, Stadler PF, Vogel J. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 2010, 464(7286):250-255. 10.1038/nature08756, 20164839.
-
(2010)
Nature
, vol.464
, Issue.7286
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
Sittka, A.6
Chabas, S.7
Reiche, K.8
Hackermuller, J.9
Reinhardt, R.10
Stadler, P.F.11
Vogel, J.12
-
46
-
-
0842329749
-
Metal import through microbial membranes
-
10.1016/S0092-8674(03)01030-4, 14718163
-
Ferguson AD, Deisenhofer J. Metal import through microbial membranes. Cell 2004, 116(1):15-24. 10.1016/S0092-8674(03)01030-4, 14718163.
-
(2004)
Cell
, vol.116
, Issue.1
, pp. 15-24
-
-
Ferguson, A.D.1
Deisenhofer, J.2
-
47
-
-
77956505672
-
TonB-Dependent Transporters: Regulation, Structure, and Function
-
10.1146/annurev.micro.112408.134247, 20420522
-
Noinaj N, Guillier M, Barnard TJ, Buchanan SK. TonB-Dependent Transporters: Regulation, Structure, and Function. Annu Rev Microbiol 2010, 64:43-60. 10.1146/annurev.micro.112408.134247, 20420522.
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 43-60
-
-
Noinaj, N.1
Guillier, M.2
Barnard, T.J.3
Buchanan, S.K.4
-
48
-
-
22344455805
-
Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
-
10.1101/gr.3378705, 1142466, 15899963
-
Qian W, Jia Y, Ren SX, He YQ, Feng JX, Lu LF, Sun Q, Ying G, Tang DJ, Tang H, Wu W, Hao P, Wang L, Jiang BL, Zeng S, Gu WY, Lu G, Rong L, Tian Y, Yao Z, Fu G, Chen B, Fang R, Qiang B, Chen Z, Zhao GP, Tang JL, He C. Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res 2005, 15(6):757-767. 10.1101/gr.3378705, 1142466, 15899963.
-
(2005)
Genome Res
, vol.15
, Issue.6
, pp. 757-767
-
-
Qian, W.1
Jia, Y.2
Ren, S.X.3
He, Y.Q.4
Feng, J.X.5
Lu, L.F.6
Sun, Q.7
Ying, G.8
Tang, D.J.9
Tang, H.10
Wu, W.11
Hao, P.12
Wang, L.13
Jiang, B.L.14
Zeng, S.15
Gu, W.Y.16
Lu, G.17
Rong, L.18
Tian, Y.19
Yao, Z.20
Fu, G.21
Chen, B.22
Fang, R.23
Qiang, B.24
Chen, Z.25
Zhao, G.P.26
Tang, J.L.27
He, C.28
more..
-
49
-
-
45649085030
-
Plant carbohydrate scavenging through TonB-dependent receptors: a feature shared by phytopathogenic and aquatic bacteria
-
10.1371/journal.pone.0000224, 1790865, 17311090
-
Blanvillain S, Meyer D, Boulanger A, Lautier M, Guynet C, Denance N, Vasse J, Lauber E, Arlat M. Plant carbohydrate scavenging through TonB-dependent receptors: a feature shared by phytopathogenic and aquatic bacteria. PLoS One 2007, 2(2):e224. 10.1371/journal.pone.0000224, 1790865, 17311090.
-
(2007)
PLoS One
, vol.2
, Issue.2
-
-
Blanvillain, S.1
Meyer, D.2
Boulanger, A.3
Lautier, M.4
Guynet, C.5
Denance, N.6
Vasse, J.7
Lauber, E.8
Arlat, M.9
-
50
-
-
20644441568
-
Growth deficiency of a Xanthomonas oryzae pv. oryzae fur mutant in rice leaves is rescued by ascorbic acid supplementation
-
10.1094/MPMI-18-0644, 16042010
-
Subramoni S, Sonti RV. Growth deficiency of a Xanthomonas oryzae pv. oryzae fur mutant in rice leaves is rescued by ascorbic acid supplementation. Mol Plant Microbe Interact 2005, 18(7):644-651. 10.1094/MPMI-18-0644, 16042010.
-
(2005)
Mol Plant Microbe Interact
, vol.18
, Issue.7
, pp. 644-651
-
-
Subramoni, S.1
Sonti, R.V.2
-
51
-
-
0037007078
-
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
-
10.1073/pnas.032066599, 123697, 11917098
-
Masse E, Gottesman S. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci USA 2002, 99(7):4620-4625. 10.1073/pnas.032066599, 123697, 11917098.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.7
, pp. 4620-4625
-
-
Masse, E.1
Gottesman, S.2
-
52
-
-
33750443276
-
RyhB small RNA modulates the free intracellular iron pool and is essential for normal growth during iron limitation in Escherichia coli
-
10.1111/j.1365-2958.2006.05439.x, 17078818
-
Jacques JF, Jang S, Prevost K, Desnoyers G, Desmarais M, Imlay J, Masse E. RyhB small RNA modulates the free intracellular iron pool and is essential for normal growth during iron limitation in Escherichia coli. Mol Microbiol 2006, 62(4):1181-1190. 10.1111/j.1365-2958.2006.05439.x, 17078818.
-
(2006)
Mol Microbiol
, vol.62
, Issue.4
, pp. 1181-1190
-
-
Jacques, J.F.1
Jang, S.2
Prevost, K.3
Desnoyers, G.4
Desmarais, M.5
Imlay, J.6
Masse, E.7
-
53
-
-
77957015946
-
A small RNA promotes siderophore production through transcriptional and metabolic remodeling
-
10.1073/pnas.1007805107, 20696910
-
Salvail H, Lanthier-Bourbonnais P, Sobota JM, Caza M, Benjamin JA, Mendieta ME, Lepine F, Dozois CM, Imlay J, Masse E. A small RNA promotes siderophore production through transcriptional and metabolic remodeling. Proc Natl Acad Sci USA 2010, 107(34):15223-15228. 10.1073/pnas.1007805107, 20696910.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.34
, pp. 15223-15228
-
-
Salvail, H.1
Lanthier-Bourbonnais, P.2
Sobota, J.M.3
Caza, M.4
Benjamin, J.A.5
Mendieta, M.E.6
Lepine, F.7
Dozois, C.M.8
Imlay, J.9
Masse, E.10
-
54
-
-
34249777280
-
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
-
10.1111/j.1365-2958.2007.05733.x, 17542919
-
Prevost K, Salvail H, Desnoyers G, Jacques JF, Phaneuf E, Masse E. The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis. Mol Microbiol 2007, 64(5):1260-1273. 10.1111/j.1365-2958.2007.05733.x, 17542919.
-
(2007)
Mol Microbiol
, vol.64
, Issue.5
, pp. 1260-1273
-
-
Prevost, K.1
Salvail, H.2
Desnoyers, G.3
Jacques, J.F.4
Phaneuf, E.5
Masse, E.6
-
55
-
-
32644439243
-
Experimental approaches to identify non-coding RNAs
-
10.1093/nar/gkj469, 1351373, 16436800
-
Huttenhofer A, Vogel J. Experimental approaches to identify non-coding RNAs. Nucleic Acids Res 2006, 34(2):635-646. 10.1093/nar/gkj469, 1351373, 16436800.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.2
, pp. 635-646
-
-
Huttenhofer, A.1
Vogel, J.2
-
56
-
-
0038719826
-
RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs
-
10.1093/nar/gkg361, 156043, 12736298
-
Yuan G, Klambt C, Bachellerie JP, Brosius J, Huttenhofer A. RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res 2003, 31(10):2495-2507. 10.1093/nar/gkg361, 156043, 12736298.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.10
, pp. 2495-2507
-
-
Yuan, G.1
Klambt, C.2
Bachellerie, J.P.3
Brosius, J.4
Huttenhofer, A.5
-
57
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY; Spring Harbor, Third
-
Joseph Sambrook DR. Molecular Cloning: A Laboratory Manual 2001, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY; Spring Harbor, Third.
-
(2001)
Molecular Cloning: A Laboratory Manual
-
-
Joseph Sambrook, D.R.1
-
59
-
-
0028289983
-
Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum
-
10.1016/0378-1119(94)90324-7, 8045426
-
Schafer A, Tauch A, Jager W, Kalinowski J, Thierbach G, Puhler A. Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 1994, 145(1):69-73. 10.1016/0378-1119(94)90324-7, 8045426.
-
(1994)
Gene
, vol.145
, Issue.1
, pp. 69-73
-
-
Schafer, A.1
Tauch, A.2
Jager, W.3
Kalinowski, J.4
Thierbach, G.5
Puhler, A.6
-
60
-
-
0025034036
-
Extracellular proteases from Xanthomonas campestris pv. campestris, the black rot pathogen
-
184889, 2285313
-
Dow JM, Clarke BR, Milligan DE, Tang JL, Daniels MJ. Extracellular proteases from Xanthomonas campestris pv. campestris, the black rot pathogen. Appl Environ Microbiol 1990, 56(10):2994-2998. 184889, 2285313.
-
(1990)
Appl Environ Microbiol
, vol.56
, Issue.10
, pp. 2994-2998
-
-
Dow, J.M.1
Clarke, B.R.2
Milligan, D.E.3
Tang, J.L.4
Daniels, M.J.5
-
61
-
-
0025869929
-
Genetic and molecular analysis of a cluster of rpf genes involved in positive regulation of synthesis of extracellular enzymes and polysaccharide in Xanthomonas campestris pathovar campestris
-
10.1007/BF00260653, 1645442
-
Tang JL, Liu YN, Barber CE, Dow JM, Wootton JC, Daniels MJ. Genetic and molecular analysis of a cluster of rpf genes involved in positive regulation of synthesis of extracellular enzymes and polysaccharide in Xanthomonas campestris pathovar campestris. Mol Gen Genet 1991, 226(3):409-417. 10.1007/BF00260653, 1645442.
-
(1991)
Mol Gen Genet
, vol.226
, Issue.3
, pp. 409-417
-
-
Tang, J.L.1
Liu, Y.N.2
Barber, C.E.3
Dow, J.M.4
Wootton, J.C.5
Daniels, M.J.6
-
62
-
-
76149113938
-
Proteomic identification of differentially expressed proteins in the Ligon lintless mutant of upland cotton (Gossypium hirsutum L.)
-
10.1021/pr900975t, 19954254
-
Zhao PM, Wang LL, Han LB, Wang J, Yao Y, Wang HY, Du XM, Luo YM, Xia GX. Proteomic identification of differentially expressed proteins in the Ligon lintless mutant of upland cotton (Gossypium hirsutum L.). J Proteome Res 2010, 9(2):1076-1087. 10.1021/pr900975t, 19954254.
-
(2010)
J Proteome Res
, vol.9
, Issue.2
, pp. 1076-1087
-
-
Zhao, P.M.1
Wang, L.L.2
Han, L.B.3
Wang, J.4
Yao, Y.5
Wang, H.Y.6
Du, X.M.7
Luo, Y.M.8
Xia, G.X.9
-
63
-
-
48449104617
-
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
-
10.1093/nar/gkn276, 2447756, 18487275
-
Zheng Q, Wang XJ. GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res 2008, (36 Web Server):W358-363. 10.1093/nar/gkn276, 2447756, 18487275.
-
(2008)
Nucleic Acids Res
, Issue.36
-
-
Zheng, Q.1
Wang, X.J.2
|