Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 40, 2005, Pages 14249-14254

  Pichon, Christophe ^a   Felden, Brice ^a  

^a UNIVERSITÉ DE RENNES 1   (France)

Author keywords

Nosocomial infections; Prokaryotes; Small regulatory noncoding RNAs

Indexed keywords

COMPLEMENTARY RNA; RNA; SMALL RNA; UNCLASSIFIED DRUG;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL VIRULENCE; COMPARATIVE GENOMIC HYBRIDIZATION; DNA MICROARRAY; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GRAM POSITIVE BACTERIUM; HOSPITAL INFECTION; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PATHOGENICITY ISLAND; PHYLOGENY; PRIORITY JOURNAL; RNA BINDING; RNA STABILITY; RNA STRUCTURE; STAPHYLOCOCCUS AUREUS; TRANSLATION REGULATION;

BASE PAIRING; BASE SEQUENCE; BLOTTING, NORTHERN; DNA, INTERGENIC; GENE EXPRESSION REGULATION, BACTERIAL; GENOMIC ISLANDS; GENOMICS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OLIGONUCLEOTIDES; RNA, ANTISENSE; RNA, BACTERIAL; SEQUENCE ANALYSIS, RNA; STAPHYLOCOCCUS AUREUS; VIRULENCE;

BACTERIA (MICROORGANISMS); POSIBACTERIA; PROKARYOTA; STAPHYLOCOCCUS AUREUS;

EID: 26444600764     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0503838102     Document Type: Article

References (33)

1. Storz, G., Opdyke, J. A. & Zhang, A. (2004) Curr. Opin. Microbiol. 7, 140-144.
2. Johansson, J. & Cossart, P. (2003) Trends Microbiol. 11, 280-285.
3. Holden, M. T., Feil, E. J., Lindsay, J. A., Peacock, S. J., Day, N. P. J., Enright, M. C., Foster, T. J., Moore, C. E., Hurst, L., Atkin, R., et al. (2004) Proc. Natl. Acad. Sci. USA 101, 9786-9791.
4. Kwong, S. M., Skurray, R. A. & Firth, N. (2004) Mol. Microbiol. 51, 497-509.
5. Novick, R. P., Ross, H. F., Projan, S. J., Kornblum, J., Kreiswirth, B & Moghazeh, S. (1993) EMBO J. 12, 3967-3975.
6. Griffiths-Jones, S., Moxon, S., Marshall, M., Khanna, A., Eddy, S. R. & Bateman, A. (2005) Nucleic Acids Res. 33, 121-124.
7. Pichon, C. & Felden, B. (2003) Bioinformatics 19, 1707-1709.
8. Oh, E. T. & So, J. S. (2003) J. Microbiol. Methods 52, 395-398.
9. Antal, M., Bordeau, V., Douchin, V. & Felden, B. (2005) J. Biol. Chem. 280, 7901-7908.
10. Gillet, R. & Felden, B. (2001) EMBO J. 20, 2966-2976.
11. Hindley, J. (1967) J. Mol. Biol. 30, 125-136.
12. Brown, J.W. (1999) Nucleic Acids Res. 27, 314.
13. Pearson, W. R. (2000) Methods Mol. Biol. 132, 185-219.
14. Barrick, J. E., Sudarsan, N., Weinberg, Z., Ruzzo, W. L. & Breaker, R. R. (2005) RNA 11, 774-784.
15. Trotochaud, A. E. & Wassarman, K. M. (2005) Nat. Struct. Mol. Biol. 12, 313-319.
16. Somerville, G. A., Battouli, S. S., Wickman, J. M., Raffel, S. J., Kreiswirth, B. N. & Musser, J. M. (2003) Infect. Immun. 71, 4724-4732.
17. Benito, Y., Kolb, F. A., Romby, P., Lina, G., Etienne, J. & Vandenesch, F. (2000) RNA 6, 668-679.
18. Lindsay, J. A & Holden, M. T. (2004) Trends Microbiol. 12, 378-385.
19. Woese, C. R., Magrum, L. J., Gupta, R., Siegel, R. B., Stahl, D. A., Kop, J., Crawford, N., Brosius, J., Gutell, R., Hogan, J. J., et al. (1980) Nucleic Acids Res. 8, 2275-2293.
20. Suzuma, S., Asari, S., Bunai, K., Yoshino, K., Ando, Y., Kakeshita, H., Fujita, M., Nakamura, K. & Yamane, K. (2002) Microbiology 48, 2591-2598.
21. Wagner, E. G., Altuvia, S. & Romby, P. (2002) Adv. Genet. 46, 361-398.
22. Kuroda, M., Ohta, T., Uchiyama, I., Baba, T., Yuzawa, H., Cui, L., Oguchi, A., Aoki, K., Nagai, Y., Lian, J., et al. (2001) Lancet 357, 1225-1240.
23. Kreikemeyer, B., Boyle, M. D. P., Buttaro, B. A., Heinemann, M. & Podbielski, A. (2001) Mol. Microbiol. 39, 392-406.
24. Shimizu, T., Yaguchi, H., Ohtani, K., Banu, S. & Hayashi, H. (2002) Mol. Microbiol. 43, 257-265.
25. Van Schaik, W. & Abee, T. (2005) Curr. Opin. Biotechnol. 16, 218-224.
26. Morfeldt, E., Taylor, D., von Gabain, A. & Arvidson, S. (1995) EMBO J. 14, 4569-4577.
27. Lenz, D. H., Mok, K. C., Lilley, B. N., Kulkarni, R. V., Wingreen, N. S. & Bassler, B. L. (2004) Cell 118, 69-82.
28. Urbanowski, M. L., Stauffer, L. T. & Stauffer, G. V. (2000) Mol. Microbiol. 37, 856-868.
29. Kawamoto, H., Morita, T., Shimizu, A., Inada, T. & Aiba, M. (2005) Genes Dev. 19, 328-338.
30. Tang, T. H., Polacek, N., Zywicki, M., Huber, H., Brugger, K., Garrett, R., Bachellerie, J. P. & Huttenhofer, A. (2005) Mol. Microbiol. 55, 469-481.
31. Franch, T. & Gerdes, K. (2000) Curr. Opin. Microbiol. 3, 159-164.
32. Bronner, S., Monteil, H. & Prevost, G. (2004) FEMS Microbiol. Rev. 28, 183-200.
33. Novick, R. P. (2003) Mol. Microbiol. 48, 1429-1449.