-
1
-
-
0019547284
-
Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA
-
Tomizawa J., Itoh T., Selzer G., and Som T. Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA. Proc Natl Acad Sci USA 78 (1981) 1421-1425
-
(1981)
Proc Natl Acad Sci USA
, vol.78
, pp. 1421-1425
-
-
Tomizawa, J.1
Itoh, T.2
Selzer, G.3
Som, T.4
-
2
-
-
0037012663
-
Antisense-RNA regulation and RNA interference
-
Brantl S. Antisense-RNA regulation and RNA interference. Biochim Biophys Acta 1575 (2002) 15-25
-
(2002)
Biochim Biophys Acta
, vol.1575
, pp. 15-25
-
-
Brantl, S.1
-
3
-
-
14244257879
-
Detection of 5′- and 3′-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
-
Using a cloning based screen, the authors detected ∼60 new small (30-65 nt) RNAs from the E. coli chromosome, among them a few cis-encoded putative antisense RNAs with still unknown function.
-
Kawano M., Reynolds A.A., Miranda-Rios J., and Storz G. Detection of 5′- and 3′-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Nucleic Acids Res 33 (2005) 1040-1050. Using a cloning based screen, the authors detected ∼60 new small (30-65 nt) RNAs from the E. coli chromosome, among them a few cis-encoded putative antisense RNAs with still unknown function.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1040-1050
-
-
Kawano, M.1
Reynolds, A.A.2
Miranda-Rios, J.3
Storz, G.4
-
4
-
-
0027058934
-
The effect of loop size in antisense and target RNAs on the efficiency of antisense RNA control
-
Hjalt T., and Wagner E.G.H. The effect of loop size in antisense and target RNAs on the efficiency of antisense RNA control. Nucleic Acids Res 20 (1992) 6723-6732
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 6723-6732
-
-
Hjalt, T.1
Wagner, E.G.H.2
-
5
-
-
0028950890
-
Bulged-out nucleotides in an antisense RNA are required for rapid target RNA binding in vitro and inhibition in vivo
-
Hjalt T.A., and Wagner E.G.H. Bulged-out nucleotides in an antisense RNA are required for rapid target RNA binding in vitro and inhibition in vivo. Nucleic Acids Res 23 (1995) 580-587
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 580-587
-
-
Hjalt, T.A.1
Wagner, E.G.H.2
-
6
-
-
0035420790
-
Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex
-
Kolb F.A., Westhof E., Ehresmann C., Ehresman B., Wagner E.G.H., and Romby P. Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex. Nucleic Acids Res 29 (2001) 3145-3153
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3145-3153
-
-
Kolb, F.A.1
Westhof, E.2
Ehresmann, C.3
Ehresman, B.4
Wagner, E.G.H.5
Romby, P.6
-
7
-
-
0033579543
-
Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn-loop structure
-
Franch T., Petersen M., Wagner E.G.H., Jacobsen J.P., and Gerdes K. Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn-loop structure. J Mol Biol 294 (1999) 1115-1125
-
(1999)
J Mol Biol
, vol.294
, pp. 1115-1125
-
-
Franch, T.1
Petersen, M.2
Wagner, E.G.H.3
Jacobsen, J.P.4
Gerdes, K.5
-
8
-
-
0142216638
-
Antisense-RNA mediated transcriptional attenuation: Importance of a U-turn loop structure in the target RNA of plasmid pIP501 for efficient inhibition by the antisense-RNA
-
Heidrich N., and Brantl S. Antisense-RNA mediated transcriptional attenuation: Importance of a U-turn loop structure in the target RNA of plasmid pIP501 for efficient inhibition by the antisense-RNA. J Mol Biol 333 (2003) 917-929
-
(2003)
J Mol Biol
, vol.333
, pp. 917-929
-
-
Heidrich, N.1
Brantl, S.2
-
9
-
-
0344237410
-
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
-
Vogel J., Bartels V., Tang T.H., Churakov G., Slagter-Jäger J.G., Hüttenhofer A., and Wagner E.G.H. RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res 31 (2003) 6435-6443
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jäger, J.G.5
Hüttenhofer, A.6
Wagner, E.G.H.7
-
10
-
-
0026059612
-
Quantitation of ColE1-encoded replication elements
-
Brenner M., and Tomizawa J.-I. Quantitation of ColE1-encoded replication elements. Proc Natl Acad Sci USA 88 (1991) 405-409
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 405-409
-
-
Brenner, M.1
Tomizawa, J.-I.2
-
11
-
-
0030006258
-
An unusually long-lived antisense RNA in plasmid copy number control: in vivo RNAs encoded by the streptococcal plasmid pIP501
-
Brantl S., and Wagner E.G.H. An unusually long-lived antisense RNA in plasmid copy number control: in vivo RNAs encoded by the streptococcal plasmid pIP501. J Mol Biol 255 (1996) 275-288
-
(1996)
J Mol Biol
, vol.255
, pp. 275-288
-
-
Brantl, S.1
Wagner, E.G.H.2
-
12
-
-
4944264194
-
GadY, a small-RNA regulator of acid response genes in Escherichia coli
-
Opdyke J.A., Kang J.G., and Storz G. GadY, a small-RNA regulator of acid response genes in Escherichia coli. J Bacteriol 186 (2004) 6698-6705
-
(2004)
J Bacteriol
, vol.186
, pp. 6698-6705
-
-
Opdyke, J.A.1
Kang, J.G.2
Storz, G.3
-
13
-
-
33646471951
-
An internal antisense RNA regulates expression of the photosynthesis gene isiA
-
This is the first report on a cis-encoded RNA involved in regulation of a photosynthesis component.
-
Dühring U., Axmann I.M., Hess W.R., and Wilde A. An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc Natl Acad Sci USA 103 (2006) 7054-7058. This is the first report on a cis-encoded RNA involved in regulation of a photosynthesis component.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 7054-7058
-
-
Dühring, U.1
Axmann, I.M.2
Hess, W.R.3
Wilde, A.4
-
14
-
-
0027932830
-
Antisense RNA-mediated transcriptional attenuation occurs faster than stable antisense/target RNA pairing: an in vitro study of plasmid pIP501
-
Brantl S., and Wagner E.G.H. Antisense RNA-mediated transcriptional attenuation occurs faster than stable antisense/target RNA pairing: an in vitro study of plasmid pIP501. EMBO J 13 (1994) 3599-3607
-
(1994)
EMBO J
, vol.13
, pp. 3599-3607
-
-
Brantl, S.1
Wagner, E.G.H.2
-
15
-
-
0034021323
-
Antisense RNA-mediated transcriptional attenuation: an in vitro study of plasmid pT181
-
Brantl S., and Wagner E.G.H. Antisense RNA-mediated transcriptional attenuation: an in vitro study of plasmid pT181. Mol Microbiol 35 (2000) 1469-1482
-
(2000)
Mol Microbiol
, vol.35
, pp. 1469-1482
-
-
Brantl, S.1
Wagner, E.G.H.2
-
16
-
-
33847188873
-
Antisense-RNA mediated transcriptional attenuation in plasmid pIP501: The simultaneous interaction between two complementary loop pairs is required for efficient inhibition by the antisense RNA
-
Heidrich N., and Brantl S. Antisense-RNA mediated transcriptional attenuation in plasmid pIP501: The simultaneous interaction between two complementary loop pairs is required for efficient inhibition by the antisense RNA. Microbiol 153 (2007) 420-427
-
(2007)
Microbiol
, vol.153
, pp. 420-427
-
-
Heidrich, N.1
Brantl, S.2
-
17
-
-
0042346385
-
Characterizing the structural features of RNA/RNA interactions of the F-plasmid FinOP fertility inhibition system
-
Gubbins M.J., Arthur D.C., Ghetu A.F., Glover J.N.M., and Frost L.S. Characterizing the structural features of RNA/RNA interactions of the F-plasmid FinOP fertility inhibition system. J Biol Chem 278 (2003) 27663-27671
-
(2003)
J Biol Chem
, vol.278
, pp. 27663-27671
-
-
Gubbins, M.J.1
Arthur, D.C.2
Ghetu, A.F.3
Glover, J.N.M.4
Frost, L.S.5
-
18
-
-
0034768020
-
Antisense RNA regulation of the par post-segregational killing system: structural analysis and mechanism of binding of the antisense RNA, RNAII, and its target, RNAI
-
Greenfield T.J., Franch T., Gerdes K., and Weaver K.E. Antisense RNA regulation of the par post-segregational killing system: structural analysis and mechanism of binding of the antisense RNA, RNAII, and its target, RNAI. Mol Microbiol 42 (2001) 527-537
-
(2001)
Mol Microbiol
, vol.42
, pp. 527-537
-
-
Greenfield, T.J.1
Franch, T.2
Gerdes, K.3
Weaver, K.E.4
-
20
-
-
34247123592
-
Emerging plasmid-encoded antisense RNA regulated systems
-
Weaver K.E. Emerging plasmid-encoded antisense RNA regulated systems. Curr Opin Microbiol 10 (2007) 110-116
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 110-116
-
-
Weaver, K.E.1
-
22
-
-
0032496274
-
Structural basis for binding of the plasmid ColIb-P9 antisense Inc RNA to its target RNA with the 5′-rUUGGCG-3′ motif in the loop sequence
-
Asano K., Niimi T., Yokoyama S., and Mizobuchi K. Structural basis for binding of the plasmid ColIb-P9 antisense Inc RNA to its target RNA with the 5′-rUUGGCG-3′ motif in the loop sequence. J Biol Chem 273 (1998) 11826-11838
-
(1998)
J Biol Chem
, vol.273
, pp. 11826-11838
-
-
Asano, K.1
Niimi, T.2
Yokoyama, S.3
Mizobuchi, K.4
-
23
-
-
0033972159
-
Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?
-
Asano K., and Mizobuchi K. Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?. J Biol Chem 275 (2000) 1269-1274
-
(2000)
J Biol Chem
, vol.275
, pp. 1269-1274
-
-
Asano, K.1
Mizobuchi, K.2
-
24
-
-
0023448458
-
OOP RNA, produced from multicopy plasmids, inhibits cII gene expression through an RNase III-dependent mechanism
-
Krinke L., and Wulff D.L. OOP RNA, produced from multicopy plasmids, inhibits cII gene expression through an RNase III-dependent mechanism. Genes Dev 1 (1987) 1005-1012
-
(1987)
Genes Dev
, vol.1
, pp. 1005-1012
-
-
Krinke, L.1
Wulff, D.L.2
-
25
-
-
0025685246
-
RNase III-dependent hydrolysis of cII-O gene mRNA by OOP antisense RNA
-
Krinke L., and Wulff D.L. RNase III-dependent hydrolysis of cII-O gene mRNA by OOP antisense RNA. Genes Dev 4 (1990) 2223-2233
-
(1990)
Genes Dev
, vol.4
, pp. 2223-2233
-
-
Krinke, L.1
Wulff, D.L.2
-
26
-
-
0029050239
-
Antisense RNA regulation of the fatB iron transport protein gene in Vibrio anguillarum
-
Waldbeser L.S., Chen Q., and Crosa J.H. Antisense RNA regulation of the fatB iron transport protein gene in Vibrio anguillarum. Mol Microbiol 17 (1995) 747-756
-
(1995)
Mol Microbiol
, vol.17
, pp. 747-756
-
-
Waldbeser, L.S.1
Chen, Q.2
Crosa, J.H.3
-
27
-
-
0036062728
-
Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli
-
Kawano M., Oshima T., Kasai H., and Mori H. Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli. Mol Microbiol 45 (2002) 333-349
-
(2002)
Mol Microbiol
, vol.45
, pp. 333-349
-
-
Kawano, M.1
Oshima, T.2
Kasai, H.3
Mori, H.4
-
28
-
-
25144504247
-
Small untranslated RNA antitoxin in Bacillus subtilis
-
This study describes the identification of the first cis-encoded small RNA from the Bacillus subtilis chromosome and a hypothesis on the mechanism of its interaction with its target mRNA.
-
Silvaggi J.M., Perkins J.B., and Losick R. Small untranslated RNA antitoxin in Bacillus subtilis. J Bacteriol 187 (2005) 6641-6650. This study describes the identification of the first cis-encoded small RNA from the Bacillus subtilis chromosome and a hypothesis on the mechanism of its interaction with its target mRNA.
-
(2005)
J Bacteriol
, vol.187
, pp. 6641-6650
-
-
Silvaggi, J.M.1
Perkins, J.B.2
Losick, R.3
-
29
-
-
0024844260
-
Insertion sequence IS10 anti-sense pairing initiates by an interaction between the 5′ end of the target RNA and a loop in the anti-sense RNA
-
Kittle J.D., Simons R.W., Lee J., and Kleckner N. Insertion sequence IS10 anti-sense pairing initiates by an interaction between the 5′ end of the target RNA and a loop in the anti-sense RNA. J Mol Biol 210 (1989) 561-572
-
(1989)
J Mol Biol
, vol.210
, pp. 561-572
-
-
Kittle, J.D.1
Simons, R.W.2
Lee, J.3
Kleckner, N.4
-
30
-
-
0028209262
-
Mechanism of postsegregational killing: Sok antisense RNA interacts with Hok mRNA via its 5′-end single-stranded leader and competes with the 3′-end of Hok mRNA for binding to the mok translational initiation region
-
Thisted T., Sørensen N., Wagner E.G.H., and Gerdes K. Mechanism of postsegregational killing: Sok antisense RNA interacts with Hok mRNA via its 5′-end single-stranded leader and competes with the 3′-end of Hok mRNA for binding to the mok translational initiation region. EMBO J 13 (1994) 1960-1968
-
(1994)
EMBO J
, vol.13
, pp. 1960-1968
-
-
Thisted, T.1
Sørensen, N.2
Wagner, E.G.H.3
Gerdes, K.4
-
31
-
-
0025369028
-
Control of replication of plasmid R1: the duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III
-
Blomberg P., Wagner E.G.H., and Nordström K. Control of replication of plasmid R1: the duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III. EMBO J 9 (1990) 2331-2340
-
(1990)
EMBO J
, vol.9
, pp. 2331-2340
-
-
Blomberg, P.1
Wagner, E.G.H.2
Nordström, K.3
-
32
-
-
0025278320
-
The IS10 transposase mRNA is destabilized during antisense RNA control
-
Case C.C., Simons E.L., and Simons R.W. The IS10 transposase mRNA is destabilized during antisense RNA control. EMBO J 4 (1990) 1259-1266
-
(1990)
EMBO J
, vol.4
, pp. 1259-1266
-
-
Case, C.C.1
Simons, E.L.2
Simons, R.W.3
-
33
-
-
0026746407
-
Mechanism of killer gene activation. Antisense RNA-dependent RNase III cleavage ensures rapid turn-over of the stable hok, srnB and pndA effector messenger RNAs
-
Gerdes K., Nielsen A., Thorsted P., and Wagner E.G.H. Mechanism of killer gene activation. Antisense RNA-dependent RNase III cleavage ensures rapid turn-over of the stable hok, srnB and pndA effector messenger RNAs. J Mol Biol 226 (1992) 637-649
-
(1992)
J Mol Biol
, vol.226
, pp. 637-649
-
-
Gerdes, K.1
Nielsen, A.2
Thorsted, P.3
Wagner, E.G.H.4
-
34
-
-
0032424799
-
Kissing and RNA stability in antisense control of plasmid replication
-
Wagner E.G.H., and Brantl S. Kissing and RNA stability in antisense control of plasmid replication. Trends Biochem Sci 23 (1998) 451-454
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 451-454
-
-
Wagner, E.G.H.1
Brantl, S.2
-
35
-
-
0031008403
-
Antisense RNA control of plasmid R1 replication: the dominant product of the antisense RNA-mRNA binding is not a full RNA duplex
-
Malmgren C., Wagner E.G.H., Ehresmann C., Ehresmann B., and Romby P. Antisense RNA control of plasmid R1 replication: the dominant product of the antisense RNA-mRNA binding is not a full RNA duplex. J Biol Chem 272 (1997) 12508-12512
-
(1997)
J Biol Chem
, vol.272
, pp. 12508-12512
-
-
Malmgren, C.1
Wagner, E.G.H.2
Ehresmann, C.3
Ehresmann, B.4
Romby, P.5
-
36
-
-
0034331201
-
Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA
-
Kolb F.A., Engdahl H.M., Slagter-Jäger J.G., Ehresmann B., Ehresmann C., Westhof E., Wagner E.G.H., and Romby P. Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA. EMBO J 19 (2000) 5905-5915
-
(2000)
EMBO J
, vol.19
, pp. 5905-5915
-
-
Kolb, F.A.1
Engdahl, H.M.2
Slagter-Jäger, J.G.3
Ehresmann, B.4
Ehresmann, C.5
Westhof, E.6
Wagner, E.G.H.7
Romby, P.8
-
37
-
-
0034106753
-
An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment
-
Kolb F.A., Malmgren C., Westhof E., Ehresmann C., Ehresman B., Wagner E.G.H., and Romby P. An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment. RNA 6 (2000) 311-324
-
(2000)
RNA
, vol.6
, pp. 311-324
-
-
Kolb, F.A.1
Malmgren, C.2
Westhof, E.3
Ehresmann, C.4
Ehresman, B.5
Wagner, E.G.H.6
Romby, P.7
-
38
-
-
0035827221
-
Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?
-
Kolb F.A., Westhof E., Ehresmann B., Ehresmann C., Wagner E.G.H., and Romby P. Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?. J Mol Biol 309 (2001) 605-614
-
(2001)
J Mol Biol
, vol.309
, pp. 605-614
-
-
Kolb, F.A.1
Westhof, E.2
Ehresmann, B.3
Ehresmann, C.4
Wagner, E.G.H.5
Romby, P.6
-
39
-
-
0347504844
-
FinO is an RNA chaperone that facilitates sense-antisense RNA interactions
-
Arthur D.C., Ghetu A.F., Gubbins M.J., Edwards R.A., Frost L.S., and Glover J.N. FinO is an RNA chaperone that facilitates sense-antisense RNA interactions. EMBO J 22 (2003) 6346-6355
-
(2003)
EMBO J
, vol.22
, pp. 6346-6355
-
-
Arthur, D.C.1
Ghetu, A.F.2
Gubbins, M.J.3
Edwards, R.A.4
Frost, L.S.5
Glover, J.N.6
-
40
-
-
0033613914
-
Degradation of FinP antisense RNA from F-like plasmids: the RNA binding protein, FinO, protects FinP from ribonuclease E
-
Jerome L.J., van Biesen T., and Frost L.S. Degradation of FinP antisense RNA from F-like plasmids: the RNA binding protein, FinO, protects FinP from ribonuclease E. J Mol Biol 285 (1999) 1457-1473
-
(1999)
J Mol Biol
, vol.285
, pp. 1457-1473
-
-
Jerome, L.J.1
van Biesen, T.2
Frost, L.S.3
-
41
-
-
33644909105
-
Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli
-
Will W.R., and Frost L.S. Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli. J Bacteriol 188 (2006) 124-131
-
(2006)
J Bacteriol
, vol.188
, pp. 124-131
-
-
Will, W.R.1
Frost, L.S.2
-
42
-
-
0141644746
-
Global analysis of small RNA and mRNA targets of Hfq
-
Zhang A., Wassarman K.M., Rosenow C., Tjaden B.C., Storz G., and Gottesman S. Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol 50 (2003) 1111-1124
-
(2003)
Mol Microbiol
, vol.50
, pp. 1111-1124
-
-
Zhang, A.1
Wassarman, K.M.2
Rosenow, C.3
Tjaden, B.C.4
Storz, G.5
Gottesman, S.6
-
43
-
-
28244471582
-
Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control
-
Rasmussen A.A., Eriksen M., Gilany K., Udesen C., Franch T., Petersen C., and Valentin-Hansen P. Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. Mol Microbiol 58 (2006) 1421-1429
-
(2006)
Mol Microbiol
, vol.58
, pp. 1421-1429
-
-
Rasmussen, A.A.1
Eriksen, M.2
Gilany, K.3
Udesen, C.4
Franch, T.5
Petersen, C.6
Valentin-Hansen, P.7
-
44
-
-
33749165741
-
The small untranslated RNA SR1 from the B. subtilis genome is involved in the regulation of arginine catabolism
-
Heidrich N., Chinali A., Gerth U., and Brantl S. The small untranslated RNA SR1 from the B. subtilis genome is involved in the regulation of arginine catabolism. Mol Microbiol 62 (2006) 520-536
-
(2006)
Mol Microbiol
, vol.62
, pp. 520-536
-
-
Heidrich, N.1
Chinali, A.2
Gerth, U.3
Brantl, S.4
-
45
-
-
0036371843
-
Antisense RNAs in bacteria and their genetic elements
-
Wagner E.G.H., Altuvia S., and Romby P. Antisense RNAs in bacteria and their genetic elements. Adv Genet 46 (2002) 361-398
-
(2002)
Adv Genet
, vol.46
, pp. 361-398
-
-
Wagner, E.G.H.1
Altuvia, S.2
Romby, P.3
|