-
1
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
Argaman, L., Hershberg, R., Vogel, J., Bejerano, G., Wagner, E.G., Margalit, H. Altuvia, S. (2001) Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 11 : 941 950.
-
(2001)
Curr Biol
, vol.11
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.5
Margalit, H.6
Altuvia, S.7
-
2
-
-
14044254214
-
The mechanism of upstream activation in the rrnB operon of Mycobacterium smegmatis is different from the Escherichia coli paradigm
-
Arnvig, K.B., Gopal, B., Papavinasasundaram, K.G., Cox, R.A. Colston, M.J. (2005) The mechanism of upstream activation in the rrnB operon of Mycobacterium smegmatis is different from the Escherichia coli paradigm. Microbiology 151 : 467 473.
-
(2005)
Microbiology
, vol.151
, pp. 467-473
-
-
Arnvig, K.B.1
Gopal, B.2
Papavinasasundaram, K.G.3
Cox, R.A.4
Colston, M.J.5
-
3
-
-
0034072868
-
Probing the structure of RNAIII, the Staphylococcus aureus agr regulatory RNA, and identification of the RNA domain involved in repression of protein A expression
-
Benito, Y., Kolb, F.A., Romby, P., Lina, G., Etienne, J. Vandenesch, F. (2000) Probing the structure of RNAIII, the Staphylococcus aureus agr regulatory RNA, and identification of the RNA domain involved in repression of protein A expression. RNA (New York, NY) 6 : 668 679.
-
(2000)
RNA (New York, NY)
, vol.6
, pp. 668-679
-
-
Benito, Y.1
Kolb, F.A.2
Romby, P.3
Lina, G.4
Etienne, J.5
Vandenesch, F.6
-
4
-
-
33847095025
-
No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus
-
Bohn, C., Rigoulay, C. Bouloc, P. (2007) No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus. BMC Microbiol 7 : 10.
-
(2007)
BMC Microbiol
, vol.7
, pp. 10
-
-
Bohn, C.1
Rigoulay, C.2
Bouloc, P.3
-
5
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole, S.T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393 : 537 544.
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris, D.6
-
6
-
-
50649104037
-
Protein translocation across the bacterial cytoplasmic membrane
-
Driessen, A.J. Nouwen, N. (2008) Protein translocation across the bacterial cytoplasmic membrane. Annu Rev Biochem 77 : 643 667.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 643-667
-
-
Driessen, A.J.1
Nouwen, N.2
-
7
-
-
58149191274
-
Rfam: Updates to the RNA families database
-
Gardner, P.P., Daub, J., Tate, J.G., Nawrocki, E.P., Kolbe, D.L., Lindgreen, S., et al. (2009) Rfam: updates to the RNA families database. Nucleic Acids Res 37 : D136 D140.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
Nawrocki, E.P.4
Kolbe, D.L.5
Lindgreen, S.6
-
8
-
-
33746561248
-
Inhibition of rot translation by RNAIII, a key feature of agr function
-
Geisinger, E., Adhikari, R.P., Jin, R., Ross, H.F. Novick, R.P. (2006) Inhibition of rot translation by RNAIII, a key feature of agr function. Mol Microbiol 61 : 1038 1048.
-
(2006)
Mol Microbiol
, vol.61
, pp. 1038-1048
-
-
Geisinger, E.1
Adhikari, R.P.2
Jin, R.3
Ross, H.F.4
Novick, R.P.5
-
9
-
-
33947662068
-
Versatile polyketide enzymatic machinery for the biosynthesis of complex mycobacterial lipids
-
Gokhale, R.S., Saxena, P., Chopra, T. Mohanty, D. (2007) Versatile polyketide enzymatic machinery for the biosynthesis of complex mycobacterial lipids. Nat Prod Rep 24 : 267 277.
-
(2007)
Nat Prod Rep
, vol.24
, pp. 267-277
-
-
Gokhale, R.S.1
Saxena, P.2
Chopra, T.3
Mohanty, D.4
-
10
-
-
4344682527
-
The small RNA regulators of Escherichia coli: Roles and mechanisms*
-
Gottesman, S. (2004) The small RNA regulators of Escherichia coli: roles and mechanisms*. Annu Rev Microbiol 58 : 303 328.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
11
-
-
20644462362
-
Micros for microbes: Non-coding regulatory RNAs in bacteria
-
Gottesman, S. (2005) Micros for microbes: non-coding regulatory RNAs in bacteria. Trends Genet 21 : 399 404.
-
(2005)
Trends Genet
, vol.21
, pp. 399-404
-
-
Gottesman, S.1
-
12
-
-
34250651738
-
Small RNA regulators and the bacterial response to stress
-
Gottesman, S., McCullen, C.A., Guillier, M., Vanderpool, C.K., Majdalani, N., Benhammou, J., et al. (2006) Small RNA regulators and the bacterial response to stress. Cold Spring Harb Symp Quant Biol 71 : 1 11.
-
(2006)
Cold Spring Harb Symp Quant Biol
, vol.71
, pp. 1-11
-
-
Gottesman, S.1
McCullen, C.A.2
Guillier, M.3
Vanderpool, C.K.4
Majdalani, N.5
Benhammou, J.6
-
13
-
-
13444252847
-
Rfam: Annotating non-coding RNAs in complete genomes
-
Griffiths-Jones, S., Moxon, S., Marshall, M., Khanna, A., Eddy, S.R. Bateman, A. (2005) Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res 33 : D121 D124.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
14
-
-
14244257879
-
Detection of 5′- and 3′-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
-
Kawano, M., Reynolds, A.A., Miranda-Rios, J. Storz, G. (2005) Detection of 5′- and 3′-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Nucleic Acids Res 33 : 1040 1050.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1040-1050
-
-
Kawano, M.1
Reynolds, A.A.2
Miranda-Rios, J.3
Storz, G.4
-
15
-
-
0032539857
-
3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
-
Li, Z., Pandit, S. Deutscher, M.P. (1998) 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad Sci USA 95 : 2856 2861.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 2856-2861
-
-
Li, Z.1
Pandit, S.2
Deutscher, M.P.3
-
16
-
-
34247173351
-
Identification of small RNAs in diverse bacterial species
-
Livny, J. Waldor, M.K. (2007) Identification of small RNAs in diverse bacterial species. Curr Opin Microbiol 10 : 96 101.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 96-101
-
-
Livny, J.1
Waldor, M.K.2
-
17
-
-
22844436749
-
SRNAPredict: An integrative computational approach to identify sRNAs in bacterial genomes
-
Livny, J., Fogel, M.A., Davis, B.M. Waldor, M.K. (2005) sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes. Nucleic Acids Res 33 : 4096 4105.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4096-4105
-
-
Livny, J.1
Fogel, M.A.2
Davis, B.M.3
Waldor, M.K.4
-
18
-
-
33746533172
-
Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2
-
Livny, J., Brencic, A., Lory, S. Waldor, M.K. (2006) Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2. Nucleic Acids Res 34 : 3484 3493.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3484-3493
-
-
Livny, J.1
Brencic, A.2
Lory, S.3
Waldor, M.K.4
-
19
-
-
0036223676
-
The poly (C) -binding proteins: A multiplicity of functions and a search for mechanisms
-
Makeyev, A.V. Liebhaber, S.A. (2002) The poly (C) -binding proteins: a multiplicity of functions and a search for mechanisms. RNA (New York, NY) 8 : 265 278.
-
(2002)
RNA (New York, NY)
, vol.8
, pp. 265-278
-
-
Makeyev, A.V.1
Liebhaber, S.A.2
-
20
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D.H., Sabina, J., Zuker, M. Turner, D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 288 : 911 940.
-
(1999)
J Mol Biol
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
21
-
-
19944427295
-
Mycobacterium tuberculosis pks12 produces a novel polyketide presented by CD1c to T cells
-
Matsunaga, I., Bhatt, A., Young, D.C., Cheng, T.Y., Eyles, S.J., Besra, G.S., et al. (2004) Mycobacterium tuberculosis pks12 produces a novel polyketide presented by CD1c to T cells. J Exp Med 200 : 1559 1569.
-
(2004)
J Exp Med
, vol.200
, pp. 1559-1569
-
-
Matsunaga, I.1
Bhatt, A.2
Young, D.C.3
Cheng, T.Y.4
Eyles, S.J.5
Besra, G.S.6
-
22
-
-
34547907085
-
Identification of Mycobacterium using the EF-Tu encoding (tuf) gene and the tmRNA encoding (ssrA) gene
-
Mignard, S. Flandrois, J.P. (2007) Identification of Mycobacterium using the EF-Tu encoding (tuf) gene and the tmRNA encoding (ssrA) gene. J Med Microbiology 56 : 1033 1041.
-
(2007)
J Med Microbiology
, vol.56
, pp. 1033-1041
-
-
Mignard, S.1
Flandrois, J.P.2
-
23
-
-
0027180031
-
Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule
-
Novick, R.P., Ross, H.F., Projan, S.J., Kornblum, J., Kreiswirth, B. Moghazeh, S. (1993) Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule. EMBO J 12 : 3967 3975.
-
(1993)
EMBO J
, vol.12
, pp. 3967-3975
-
-
Novick, R.P.1
Ross, H.F.2
Projan, S.J.3
Kornblum, J.4
Kreiswirth, B.5
Moghazeh, S.6
-
24
-
-
41849139346
-
Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
-
Padalon-Brauch, G., Hershberg, R., Elgrably-Weiss, M., Baruch, K., Rosenshine, I., Margalit, H. Altuvia, S. (2008) Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence. Nucleic Acids Res 36 : 1913 1927.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1913-1927
-
-
Padalon-Brauch, G.1
Hershberg, R.2
Elgrably-Weiss, M.3
Baruch, K.4
Rosenshine, I.5
Margalit, H.6
Altuvia, S.7
-
25
-
-
44849094549
-
Biocomputational prediction of small non-coding RNAs in Streptomyces
-
Panek, J., Bobek, J., Mikulik, K., Basler, M. Vohradsky, J. (2008) Biocomputational prediction of small non-coding RNAs in Streptomyces. BMC Genomics 9 : 217.
-
(2008)
BMC Genomics
, vol.9
, pp. 217
-
-
Panek, J.1
Bobek, J.2
Mikulik, K.3
Basler, M.4
Vohradsky, J.5
-
26
-
-
33646483181
-
The role of RNAs in the regulation of virulence-gene expression
-
Romby, P., Vandenesch, F. Wagner, E.G. (2006) The role of RNAs in the regulation of virulence-gene expression. Curr Opin Microbiol 9 : 229 236.
-
(2006)
Curr Opin Microbiol
, vol.9
, pp. 229-236
-
-
Romby, P.1
Vandenesch, F.2
Wagner, E.G.3
-
27
-
-
0345701347
-
Genes required for mycobacterial growth defined by high density mutagenesis
-
Sassetti, C.M., Boyd, D.H. Rubin, E.J. (2003) Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 48 : 77 84.
-
(2003)
Mol Microbiol
, vol.48
, pp. 77-84
-
-
Sassetti, C.M.1
Boyd, D.H.2
Rubin, E.J.3
-
28
-
-
0043142536
-
Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: Insights into the phagosomal environment
-
Schnappinger, D., Ehrt, S., Voskuil, M.I., Liu, Y., Mangan, J.A., Monahan, I.M., et al. (2003) Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment. J Exp Med 198 : 693 704.
-
(2003)
J Exp Med
, vol.198
, pp. 693-704
-
-
Schnappinger, D.1
Ehrt, S.2
Voskuil, M.I.3
Liu, Y.4
Mangan, J.A.5
Monahan, I.M.6
-
29
-
-
0025922291
-
New use of BCG for recombinant vaccines
-
Stover, C.K., de la Cruz, V.F., Fuerst, T.R., Burlein, J.E., Benson, L.A., Bennett, L.T., et al. (1991) New use of BCG for recombinant vaccines. Nature 351 : 456 460.
-
(1991)
Nature
, vol.351
, pp. 456-460
-
-
Stover, C.K.1
De La Cruz, V.F.2
Fuerst, T.R.3
Burlein, J.E.4
Benson, L.A.5
Bennett, L.T.6
-
30
-
-
0036714801
-
Predicted structure and phyletic distribution of the RNA-binding protein Hfq
-
Sun, X., Zhulin, I. Wartell, R.M. (2002) Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Res 30 : 3662 3671.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3662-3671
-
-
Sun, X.1
Zhulin, I.2
Wartell, R.M.3
-
31
-
-
0029903905
-
Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate
-
Svard, S.G., Kagardt, U. Kirsebom, L.A. (1996) Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate. RNA (New York, NY) 2 : 463 472.
-
(1996)
RNA (New York, NY)
, vol.2
, pp. 463-472
-
-
Svard, S.G.1
Kagardt, U.2
Kirsebom, L.A.3
-
33
-
-
58149139033
-
A rough guide to the non-coding RNA world of Salmonella
-
Vogel, J. (2009) A rough guide to the non-coding RNA world of Salmonella. Mol Microbiol 71 : 1 11.
-
(2009)
Mol Microbiol
, vol.71
, pp. 1-11
-
-
Vogel, J.1
-
34
-
-
29044443534
-
How to find small non-coding RNAs in bacteria
-
Vogel, J. Sharma, C.M. (2005) How to find small non-coding RNAs in bacteria. Biol Chem 386 : 1219 1238.
-
(2005)
Biol Chem
, vol.386
, pp. 1219-1238
-
-
Vogel, J.1
Sharma, C.M.2
-
35
-
-
34250709662
-
Target identification of small noncoding RNAs in bacteria
-
Vogel, J. Wagner, E.G. (2007) Target identification of small noncoding RNAs in bacteria. Curr Opin Microbiol 10 : 262 270.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 262-270
-
-
Vogel, J.1
Wagner, E.G.2
-
36
-
-
0344237410
-
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
-
Vogel, J., Bartels, V., Tang, T.H., Churakov, G., Slagter-Jager, J.G., Huttenhofer, A. Wagner, E.G. (2003) RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res 31 : 6435 6443.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jager, J.G.5
Huttenhofer, A.6
Wagner, E.G.7
-
37
-
-
11144310172
-
The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide
-
Vogel, J., Argaman, L., Wagner, E.G. Altuvia, S. (2004) The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide. Curr Biol 14 : 2271 2276.
-
(2004)
Curr Biol
, vol.14
, pp. 2271-2276
-
-
Vogel, J.1
Argaman, L.2
Wagner, E.G.3
Altuvia, S.4
-
38
-
-
0035395606
-
Identification of novel small RNAs using comparative genomics and microarrays
-
Wassarman, K.M., Repoila, F., Rosenow, C., Storz, G. Gottesman, S. (2001) Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev 15 : 1637 1651.
-
(2001)
Genes Dev
, vol.15
, pp. 1637-1651
-
-
Wassarman, K.M.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
39
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters, L.S. Storz, G. (2009) Regulatory RNAs in bacteria. Cell 136 : 615 628.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
40
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31 : 3406 3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|