-
1
-
-
62849101179
-
Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: Implications for virulence and global protein translation
-
10. 1371/journal.pone. 0004809
-
Ansong, C., Yoon, H., Porwollik, S., Mottaz-Brewer, H., Petritis, B.O., Jaitly, N., Adkins, J.N., McClelland, M., Heffron, F., and Smith, R.D. (2009). Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PLoS ONE 4, e4809. 10. 1371/journal.pone.0004809.
-
(2009)
PLoS ONE
, vol.4
-
-
Ansong, C.1
Yoon, H.2
Porwollik, S.3
Mottaz-Brewer, H.4
Petritis, B.O.5
Jaitly, N.6
Adkins, J.N.7
McClelland, M.8
Heffron, F.9
Smith, R.D.10
-
2
-
-
67651225588
-
Identification of small RNAs in Mycobacterium tuberculosis
-
Arnvig, K.B., and Young, D.B. (2009). Identification of small RNAs in Mycobacterium tuberculosis. Mol. Microbiol. 73, 397-408.
-
(2009)
Mol. Microbiol.
, vol.73
, pp. 397-408
-
-
Arnvig, K.B.1
Young, D.B.2
-
3
-
-
34247169597
-
CsrB sRNA family: sequestration of RNA-binding regulatory proteins
-
DOI 10.1016/j.mib.2007.03.007, PII S1369527407000240, Cell Regulation (RNA Special Issue)
-
Babitzke, P., and Romeo, T. (2007). CsrB sRNA family: sequestration of RNAbinding regulatory proteins. Curr. Opin. Microbiol. 10, 156-163. (Pubitemid 46590047)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 156-163
-
-
Babitzke, P.1
Romeo, T.2
-
4
-
-
0033969359
-
Identification of novel VirR/VirS-regulated genes in Clostridium perfringens
-
DOI 10.1046/j.1365-2958.2000.01760.x
-
Banu, S., Ohtani, K., Yaguchi, H., Swe, T., Cole, S.T., Hayashi, H., and Shimizu, T. (2000). Identification of novel VirR/VirS-regulated genes in Clostridium perfringens. Mol. Microbiol. 35, 854-864. (Pubitemid 30107536)
-
(2000)
Molecular Microbiology
, vol.35
, Issue.4
, pp. 854-864
-
-
Banu, S.1
Ohtani, K.2
Yaguchi, H.3
Swe, T.4
Cole, S.T.5
Hayashi, H.6
Shimizu, T.7
-
5
-
-
17844379221
-
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter
-
DOI 10.1261/rna.7286705
-
Barrick, J.E., Sudarsan, N., Weinberg, Z., Ruzzo, W.L., and Breaker, R.R. (2005). 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter. RNA 11, 774-784. (Pubitemid 40594342)
-
(2005)
RNA
, vol.11
, Issue.5
, pp. 774-784
-
-
Barrick, J.E.1
Sudarsan, N.2
Weinberg, Z.3
Ruzzo, W.L.4
Breaker, R.R.5
-
6
-
-
78049393967
-
Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
-
press
-
Bohn, C., Rigoulay, C., Chabelskaya, S., Sharma, C.M., Marchais, A., Skorski, P., Borezee-Durant, B., Barbet, R., Jacquet, E., Jacq, A., et al. (2010). Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. Nucleic Acids Res., in press.
-
(2010)
Nucleic Acids Res.
-
-
Bohn, C.1
Rigoulay, C.2
Chabelskaya, S.3
Sharma, C.M.4
Marchais, A.5
Skorski, P.6
Borezee-Durant, B.7
Barbet, R.8
Jacquet, E.9
Jacq, A.10
-
7
-
-
34249881878
-
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism
-
DOI 10.1101/gad.423507
-
Boisset, S., Geissmann, T., Huntzinger, E., Fechter, P., Bendridi, N., Possedko, M., Chevalier, C., Helfer, A.C., Benito, Y., Jacquier, A., et al. (2007). Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism.Genes Dev. 21, 1353-1366. (Pubitemid 46871039)
-
(2007)
Genes and Development
, vol.21
, Issue.11
, pp. 1353-1366
-
-
Boisset, S.1
Geissmann, T.2
Huntzinger, E.3
Fechter, P.4
Bendridi, N.5
Possedko, M.6
Chevalier, C.7
Helfer, A.C.8
Benito, Y.9
Jacquier, A.10
Gaspin, C.11
Vandenesch, F.12
Romby, P.13
-
8
-
-
57149111586
-
Small RNA binding to 50 mRNA coding region inhibits translational initiation
-
Bouvier, M., Sharma, C.M., Mika, F., Nierhaus, K.H., and Vogel, J. (2008). Small RNA binding to 50 mRNA coding region inhibits translational initiation. Mol. Cell 32, 827-837.
-
(2008)
Mol. Cell.
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
9
-
-
65349160904
-
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA
-
Brencic, A., and Lory, S. (2009). Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA. Mol. Microbiol. 72, 612-632.
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 612-632
-
-
Brencic, A.1
Lory, S.2
-
10
-
-
67651219385
-
The GacS/GacA signal transduction system of Pseudomonas aeruginosa acts exclusively through its control over the transcription of the RsmY and RsmZ regulatory small RNAs
-
Brencic, A., McFarland, K.A., McManus, H.R., Castang, S., Mogno, I., Dove, S.L., and Lory, S. (2009). The GacS/GacA signal transduction system of Pseudomonas aeruginosa acts exclusively through its control over the transcription of the RsmY and RsmZ regulatory small RNAs. Mol. Microbiol. 73, 434-445.
-
(2009)
Mol. Microbiol.
, vol.73
, pp. 434-445
-
-
Brencic, A.1
McFarland, K.A.2
McManus, H.R.3
Castang, S.4
Mogno, I.5
Dove, S.L.6
Lory, S.7
-
11
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns, S.J., Jore, M.M., Lundgren, M., Westra, E.R., Slijkhuis, R.J., Snijders, A.P., Dickman, M.J., Makarova, K.S., Koonin, E.V., and van der Oost, J. (2008). Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321, 960-964.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
Van Der Oost, J.10
-
12
-
-
32244434929
-
Influence of the regulatory protein RsmA on cellular functions in Pseudomonas aeruginosa PAO1, as revealed by transcriptome analysis
-
DOI 10.1099/mic.0.28324-0
-
Burrowes, E., Baysse, C., Adams, C., and O'Gara, F. (2006). Influence of the regulatory protein RsmA on cellular functions in Pseudomonas aeruginosa PAO1, as revealed by transcriptome analysis. Microbiology 152, 405-418. (Pubitemid 43210672)
-
(2006)
Microbiology
, vol.152
, Issue.2
, pp. 405-418
-
-
Burrowes, E.1
Baysse, C.2
Adams, C.3
O'Gara, F.4
-
13
-
-
77954665866
-
A Staphylococcus aureus small RNA is required for bacterial virulence and regulates the expression of an immune-evasion molecule
-
10.1371/journal.ppat.1000927
-
Chabelskaya, S., Gaillot, O., and Felden, B. (2010). A Staphylococcus aureus small RNA is required for bacterial virulence and regulates the expression of an immune-evasion molecule. PLoS Pathog. 6, e1000927. 10.1371/journal.ppat.1000927.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Chabelskaya, S.1
Gaillot, O.2
Felden, B.3
-
14
-
-
75249100904
-
The role of Hfq in bacterial pathogens
-
Chao, Y., and Vogel, J. (2010). The role of Hfq in bacterial pathogens. Curr. Opin. Microbiol. 13, 24-33.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 24-33
-
-
Chao, Y.1
Vogel, J.2
-
15
-
-
77950404950
-
Staphylococcus aureus RNAIII binds to two distant regions of coa mRNA to arrest translation and promote mRNA degradation
-
10.1371/journal.ppat.1000809
-
Chevalier, C., Boisset, S., Romilly, C., Masquida, B., Fechter, P., Geissmann, T., Vandenesch, F., and Romby, P. (2010). Staphylococcus aureus RNAIII binds to two distant regions of coa mRNA to arrest translation and promote mRNA degradation. PLoS Pathog. 6, e1000809. 10.1371/journal.ppat. 1000809.
-
(2010)
PLoS Pathog
, vol.6
-
-
Chevalier, C.1
Boisset, S.2
Romilly, C.3
Masquida, B.4
Fechter, P.5
Geissmann, T.6
Vandenesch, F.7
Romby, P.8
-
16
-
-
33745744196
-
Molecular basis for temperature sensing by an RNA thermometer
-
DOI 10.1038/sj.emboj.7601128, PII 7601128
-
Chowdhury, S., Maris, C., Allain, F.H., and Narberhaus, F. (2006). Molecular basis for temperature sensing by an RNA thermometer. EMBO J. 25, 2487-2497. (Pubitemid 44012231)
-
(2006)
EMBO Journal
, vol.25
, Issue.11
, pp. 2487-2497
-
-
Chowdhury, S.1
Maris, C.2
Allain, F.H.-T.3
Narberhaus, F.4
-
17
-
-
77951191945
-
MicA sRNA links the PhoP regulon to cell envelope stress
-
Coornaert, A., Lu, A., Mandin, P., Springer, M., Gottesman, S., and Guillier, M. (2010). MicA sRNA links the PhoP regulon to cell envelope stress. Mol. Microbiol. 76, 467-479.
-
(2010)
Mol. Microbiol
, vol.76
, pp. 467-479
-
-
Coornaert, A.1
Lu, A.2
Mandin, P.3
Springer, M.4
Gottesman, S.5
Guillier, M.6
-
18
-
-
46049103165
-
Regulatory network controlling extracellular proteins in Erwinia carotovora subsp. carotovora: FlhDC, the master regulator of flagellar genes, activates rsmB regulatory RNA production by affecting gacA and hexA (lrhA) expression
-
DOI 10.1128/JB.01828-07
-
Cui, Y., Chatterjee, A., Yang, H., and Chatterjee, A.K. (2008). Regulatory network controlling extracellular proteins in Erwinia carotovora subsp. carotovora: FlhDC, the master regulator of flagellar genes, activates rsmB regulatory RNA production by affecting gacA and hexA (lrhA) expression. J. Bacteriol. 190, 4610-4623. (Pubitemid 351898978)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.13
, pp. 4610-4623
-
-
Cui, Y.1
Chatterjee, A.2
Yang, H.3
Chatterjee, A.K.4
-
19
-
-
63749126957
-
Expanding roles for metabolitesensing regulatory RNAs
-
Dambach, M.D., and Winkler, W.C. (2009). Expanding roles for metabolitesensing regulatory RNAs. Curr. Opin. Microbiol. 12, 161-169.
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 161-169
-
-
Dambach, M.D.1
Winkler, W.C.2
-
20
-
-
34447328708
-
RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA
-
DOI 10.1111/j.1365-2958.2007.05796.x
-
Davis, B.M., and Waldor, M.K. (2007). RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA. Mol. Microbiol. 65, 373-385. (Pubitemid 47052725)
-
(2007)
Molecular Microbiology
, vol.65
, Issue.2
, pp. 373-385
-
-
Davis, B.M.1
Waldor, M.K.2
-
21
-
-
77952190441
-
Legionella pneumophila 6S RNA optimizes intracellular multiplication
-
Faucher, S.P., Friedlander, G., Livny, J., Margalit, H., and Shuman, H.A. (2010). Legionella pneumophila 6S RNA optimizes intracellular multiplication. Proc. Natl. Acad. Sci. USA 107, 7533-7538.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 7533-7538
-
-
Faucher, S.P.1
Friedlander, G.2
Livny, J.3
Margalit, H.4
Shuman, H.A.5
-
22
-
-
69749123311
-
Caught at its own game: Regulatory small RNA inactivated by an inducible transcript mimicking its target
-
Figueroa-Bossi, N., Valentini, M., Malleret, L., and Bossi, L. (2009). Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target. Genes Dev. 23, 2004-2015.
-
(2009)
Genes Dev.
, vol.23
, pp. 2004-2015
-
-
Figueroa-Bossi, N.1
Valentini, M.2
Malleret, L.3
Bossi, L.4
-
23
-
-
29644440072
-
Identification of CsrC and characterization of its role in epithelial cell invasion in Salmonella enterica serovar typhimurium
-
DOI 10.1128/IAI.74.1.331-339.2006
-
Fortune, D.R., Suyemoto, M., and Altier, C. (2006). Identification of CsrC and characterization of its role in epithelial cell invasion in Salmonella enterica serovar Typhimurium. Infect. Immun. 74, 331-339. (Pubitemid 43023089)
-
(2006)
Infection and Immunity
, vol.74
, Issue.1
, pp. 331-339
-
-
Fortune, D.R.1
Suyemoto, M.2
Altier, C.3
-
24
-
-
77951619556
-
Abundance of type I toxin-antitoxin systems in bacteria: Searches for new candidates and discovery of novel families
-
Fozo, E.M., Makarova, K.S., Shabalina, S.A., Yutin, N., Koonin, E.V., and Storz, G. (2010). Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families. Nucleic Acids Res. 38, 3743-3759.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3743-3759
-
-
Fozo, E.M.1
Makarova, K.S.2
Shabalina, S.A.3
Yutin, N.4
Koonin, E.V.5
Storz, G.6
-
25
-
-
69249090504
-
Listeria monocytogenes- from saprophyte to intracellular pathogen
-
Freitag, N.E., Port, G.C., and Miner, M.D. (2009). Listeria monocytogenes- from saprophyte to intracellular pathogen. Nat. Rev. Microbiol. 7, 623-628.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 623-628
-
-
Freitag, N.E.1
Port, G.C.2
Miner, M.D.3
-
26
-
-
71549126189
-
Activation of gene expression by small RNA
-
Fröhlich, K.S., and Vogel, J. (2009). Activation of gene expression by small RNA. Curr. Opin. Microbiol. 12, 674-682.
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 674-682
-
-
Fröhlich, K.S.1
Vogel, J.2
-
27
-
-
73849116916
-
A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation
-
Geissmann, T., Chevalier, C., Cros, M.J., Boisset, S., Fechter, P., Noirot, C., Schrenzel, J., Francois, P., Vandenesch, F., Gaspin, C., and Romby, P. (2009). A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation. Nucleic Acids Res. 37, 7239-7257.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 7239-7257
-
-
Geissmann, T.1
Chevalier, C.2
Cros, M.J.3
Boisset, S.4
Fechter, P.5
Noirot, C.6
Schrenzel, J.7
Francois, P.8
Vandenesch, F.9
Gaspin, C.10
Romby, P.11
-
28
-
-
77953697277
-
A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri
-
Giangrossi, M., Prosseda, G., Tran, C.N., Brandi, A., Colonna, B., and Falconi, M. (2010). A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri. Nucleic Acids Res. 38, 3362-3375.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3362-3375
-
-
Giangrossi, M.1
Prosseda, G.2
Tran, C.N.3
Brandi, A.4
Colonna, B.5
Falconi, M.6
-
29
-
-
73649123210
-
The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA
-
Giuliodori, A.M., Di Pietro, F., Marzi, S., Masquida, B., Wagner, R., Romby, P., Gualerzi, C.O., and Pon, C.L. (2010). The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA. Mol. Cell 37, 21-33.
-
(2010)
Mol. Cell
, vol.37
, pp. 21-33
-
-
Giuliodori, A.M.1
Di Pietro, F.2
Marzi, S.3
Masquida, B.4
Wagner, R.5
Romby, P.6
Gualerzi, C.O.7
Pon, C.L.8
-
30
-
-
33645064277
-
A small RNA inhibits translation of the histone-like protein Hc1 in Chlamydia trachomatis
-
Grieshaber, N.A., Grieshaber, S.S., Fischer, E.R., and Hackstadt, T. (2006). A small RNA inhibits translation of the histone-like protein Hc1 in Chlamydia trachomatis. Mol. Microbiol. 59, 541-550.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 541-550
-
-
Grieshaber, N.A.1
Grieshaber, S.S.2
Fischer, E.R.3
Hackstadt, T.4
-
31
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale, C.R., Zhao, P., Olson, S., Duff, M.O., Graveley, B.R., Wells, L., Terns, R.M., and Terns, M.P. (2009). RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139, 945-956.
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
Olson, S.3
Duff, M.O.4
Graveley, B.R.5
Wells, L.6
Terns, R.M.7
Terns, M.P.8
-
32
-
-
34548700626
-
Identification of the genes directly controlled by the response regulator CiaR in Streptococcus pneumoniae: Five out of 15 promoters drive expression of small non-coding RNAs
-
DOI 10.1111/j.1365-2958.2007.05900.x
-
Halfmann, A., Kovacs, M., Hakenbeck, R., and Bruckner, R. (2007). Identification of the genes directly controlled by the response regulator CiaR in Streptococcus pneumoniae: five out of 15 promoters drive expression of small noncoding RNAs. Mol. Microbiol. 66, 110-126. (Pubitemid 47414793)
-
(2007)
Molecular Microbiology
, vol.66
, Issue.1
, pp. 110-126
-
-
Halfmann, A.1
Kovacs, M.2
Hakenbeck, R.3
Bruckner, R.4
-
34
-
-
67651204873
-
Hfq affects the expression of the LEE pathogenicity island in enterohaemorrhagic Escherichia coli
-
Hansen, A.M., and Kaper, J.B. (2009). Hfq affects the expression of the LEE pathogenicity island in enterohaemorrhagic Escherichia coli. Mol. Microbiol. 73, 446-465.
-
(2009)
Mol. Microbiol.
, vol.73
, pp. 446-465
-
-
Hansen, A.M.1
Kaper, J.B.2
-
35
-
-
43449103621
-
A Csr-type regulatory system, including small non-coding RNAs, regulates the global virulence regulator RovA of Yersinia pseudotuberculosis through RovM
-
DOI 10.1111/j.1365-2958.2008.06218.x
-
Heroven, A.K., Bohme, K., Rohde, M., and Dersch, P. (2008). A Csr-type regulatory system, including small non-coding RNAs, regulates the global virulence regulator RovA of Yersinia pseudotuberculosis through RovM. Mol. Microbiol. 68, 1179-1195. (Pubitemid 351670194)
-
(2008)
Molecular Microbiology
, vol.68
, Issue.5
, pp. 1179-1195
-
-
Heroven, A.K.1
Bohme, K.2
Rohde, M.3
Dersch, P.4
-
36
-
-
0027141070
-
Temperature sensing in Yersinia pestis: Translation of the LcrF activator protein is thermally regulated
-
Hoe, N.P., and Goguen, J.D. (1993). Temperature sensing in Yersinia pestis: translation of the LcrF activator protein is thermally regulated. J. Bacteriol. 175, 7901-7909. (Pubitemid 24004397)
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.24
, pp. 7901-7909
-
-
Hoe, N.P.1
Goguen, J.D.2
-
37
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
New York, N. Y
-
Horvath, P., and Barrangou, R. (2010). CRISPR/Cas, the immune system of bacteria and archaea. Science (New York, N. Y 327, 167-170.
-
(2010)
Science
, vol.327
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
38
-
-
0037031594
-
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes
-
DOI 10.1016/S0092-8674(02)00905-4
-
Johansson, J., Mandin, P., Renzoni, A., Chiaruttini, C., Springer, M., and Cossart, P. (2002). An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes. Cell 110, 551-561. (Pubitemid 35247836)
-
(2002)
Cell
, vol.110
, Issue.5
, pp. 551-561
-
-
Johansson, J.1
Mandin, P.2
Renzoni, A.3
Chiaruttini, C.4
Springer, M.5
Cossart, P.6
-
39
-
-
0034056347
-
SsrA (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesis
-
DOI 10.1128/JB.182.6.1558-1563.2000
-
Julio, S.M., Heithoff, D.M., and Mahan, M.J. (2000). ssrA (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesis. J. Bacteriol. 182, 1558-1563. (Pubitemid 30121119)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.6
, pp. 1558-1563
-
-
Julio, S.M.1
Heithoff, D.M.2
Mahan, M.J.3
-
40
-
-
28044473169
-
Three small RNAs jointly ensure secondary metabolism and biocontrol in Pseudomonas fluorescens CHA0
-
DOI 10.1073/pnas.0505673102
-
Kay, E., Dubuis, C., and Haas, D. (2005). Three small RNAs jointly ensure secondary metabolism and biocontrol in Pseudomonas fluorescens CHA0. Proc. Natl. Acad. Sci. USA 102, 17136-17141. (Pubitemid 41692696)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.47
, pp. 17136-17141
-
-
Kay, E.1
Dubuis, C.2
Haas, D.3
-
41
-
-
28644442881
-
A colonization factor links Vibrio cholerae environmental survival and human infection
-
DOI 10.1038/nature04249
-
Kirn, T.J., Jude, B.A., and Taylor, R.K. (2005). A colonization factor links Vibrio cholerae environmental survival and human infection. Nature 438, 863-866. (Pubitemid 41753069)
-
(2005)
Nature
, vol.438
, Issue.7069
, pp. 863-866
-
-
Kirn, T.J.1
Jude, B.A.2
Taylor, R.K.3
-
42
-
-
22644439820
-
Global epithelial cell transcriptional responses reveal Streptococcus pyogenes Fas regulator activity association with bacterial aggressiveness
-
DOI 10.1111/j.1462-5822.2005.00548.x
-
Klenk, M., Koczan, D., Guthke, R., Nakata, M., Thiesen, H.J., Podbielski, A., and Kreikemeyer, B. (2005). Global epithelial cell transcriptional responses reveal Streptococcus pyogenes Fas regulator activity association with bacterial aggressiveness. Cell. Microbiol. 7, 1237-1250. (Pubitemid 41179417)
-
(2005)
Cellular Microbiology
, vol.7
, Issue.9
, pp. 1237-1250
-
-
Klenk, M.1
Koczan, D.2
Guthke, R.3
Nakata, M.4
Thiesen, H.-J.5
Podbielski, A.6
Kreikemeyer, B.7
-
44
-
-
77952128269
-
An antisense RNA that governs the expression kinetics of a multifunctional virulence gene
-
Lee, E.J., and Groisman, E.A. (2010). An antisense RNA that governs the expression kinetics of a multifunctional virulence gene. Mol. Microbiol. 76, 1020-1033.
-
(2010)
Mol. Microbiol.
, vol.76
, pp. 1020-1033
-
-
Lee, E.J.1
Groisman, E.A.2
-
45
-
-
3142564584
-
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
-
DOI 10.1016/j.cell.2004.06.009, PII S0092867404005732
-
Lenz, D.H., Mok, K.C., Lilley, B.N., Kulkarni, R.V., Wingreen, N.S., and Bassler, B.L. (2004). The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118, 69-82. (Pubitemid 38902815)
-
(2004)
Cell
, vol.118
, Issue.1
, pp. 69-82
-
-
Lenz, D.H.1
Mok, K.C.2
Lilley, B.N.3
Kulkarni, R.V.4
Wingreen, N.S.5
Bassler, B.L.6
-
46
-
-
27944467332
-
CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae
-
DOI 10.1111/j.1365-2958.2005.04902.x
-
Lenz, D.H., Miller, M.B., Zhu, J., Kulkarni, R.V., and Bassler, B.L. (2005). CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae. Mol. Microbiol. 58, 1186-1202. (Pubitemid 41667234)
-
(2005)
Molecular Microbiology
, vol.58
, Issue.4
, pp. 1186-1202
-
-
Lenz, D.H.1
Miller, M.B.2
Zhu, J.3
Kulkarnl, R.V.4
Bassler, B.L.5
-
47
-
-
34247173351
-
Identification of small RNAs in diverse bacterial species
-
DOI 10.1016/j.mib.2007.03.005, PII S1369527407000227, Cell Regulation (RNA Special Issue)
-
Livny, J., and Waldor, M.K. (2007). Identification of small RNAs in diverse bacterial species. Curr. Opin. Microbiol. 10, 96-101. (Pubitemid 46590045)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 96-101
-
-
Livny, J.1
Waldor, M.K.2
-
48
-
-
70350771280
-
A transacting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes
-
Loh, E., Dussurget, O., Gripenland, J., Vaitkevicius, K., Tiensuu, T., Mandin, P., Repoila, F., Buchrieser, C., Cossart, P., and Johansson, J. (2009). A transacting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes. Cell 139, 770-779.
-
(2009)
Cell
, vol.139
, pp. 770-779
-
-
Loh, E.1
Dussurget, O.2
Gripenland, J.3
Vaitkevicius, K.4
Tiensuu, T.5
Mandin, P.6
Repoila, F.7
Buchrieser, C.8
Cossart, P.9
Johansson, J.10
-
49
-
-
77950615020
-
Regulation of Salmonella enterica pathogenicity island 1 by DNA adenine methylation
-
Lopez-Garrido, J., and Casadesus, J. (2010). Regulation of Salmonella enterica pathogenicity island 1 by DNA adenine methylation. Genetics 184, 637-649.
-
(2010)
Genetics
, vol.184
, pp. 637-649
-
-
Lopez-Garrido, J.1
Casadesus, J.2
-
50
-
-
38849168148
-
The post-transcriptional regulator CsrA plays a central role in the adaptation of bacterial pathogens to different stages of infection in animal hosts
-
DOI 10.1099/mic.0.2007/012286-0
-
Lucchetti-Miganeh, C., Burrowes, E., Baysse, C., and Ermel, G. (2008). The post-transcriptional regulator CsrA plays a central role in the adaptation of bacterial pathogens to different stages of infection in animal hosts. Microbiology 154, 16-29. (Pubitemid 351201383)
-
(2008)
Microbiology
, vol.154
, Issue.1
, pp. 16-29
-
-
Lucchetti-Miganeh, C.1
Burrowes, E.2
Baysse, C.3
Ermel, G.4
-
51
-
-
33847371621
-
Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
-
DOI 10.1093/nar/gkl1096
-
Mandin, P., Repoila, F., Vergassola, M., Geissmann, T., and Cossart, P. (2007). Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res. 35, 962-974. (Pubitemid 46344721)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.3
, pp. 962-974
-
-
Mandin, P.1
Geissmann, T.2
Cossart, P.3
Repoila, F.4
Vergassola, M.5
-
52
-
-
4444351650
-
Synthesis of group A streptococcal virulence factors is controlled by a regulatory RNA molecule
-
DOI 10.1111/j.1365-2958.2004.04222.x
-
Mangold, M., Siller, M., Roppenser, B., Vlaminckx, B.J., Penfound, T.A., Klein, R., Novak, R., Novick, R.P., and Charpentier, E. (2004). Synthesis of group A streptococcal virulence factors is controlled by a regulatory RNA molecule. Mol. Microbiol. 53, 1515-1527. (Pubitemid 39209121)
-
(2004)
Molecular Microbiology
, vol.53
, Issue.5
, pp. 1515-1527
-
-
Mangold, M.1
Siller, M.2
Roppenser, B.3
Vlaminckx, B.J.M.4
Penfound, T.A.5
Klein, R.6
Novak, R.7
Novick, R.P.8
Charpentier, E.9
-
53
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
-
Marraffini, L.A., and Sontheimer, E.J. (2008). CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322, 1843-1845.
-
(2008)
Science
, vol.322
, pp. 1843-1845
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
54
-
-
1342285092
-
Disruption of type III secretion in Salmonella enterica serovar typhimurium by external guide sequences
-
DOI 10.1093/nar/gkh219
-
McKinney, J.S., Zhang, H., Kubori, T., Galan, J.E., and Altman, S. (2004). Disruption of type III secretion in Salmonella enterica serovar Typhimurium by external guide sequences. Nucleic Acids Res. 32, 848-854. (Pubitemid 38263079)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.2
, pp. 848-854
-
-
McKinney, J.S.1
Zhang, H.2
Kubori, T.3
Galan, J.E.4
Altman, S.5
-
55
-
-
41949117114
-
Involvement of RNA-binding protein Hfq in the post-transcriptional regulation of invE gene expression in Shigella sonnei
-
Mitobe, J., Morita-Ishihara, T., Ishihama, A., and Watanabe, H. (2008). Involvement of RNA-binding protein Hfq in the post-transcriptional regulation of invE gene expression in Shigella sonnei. J. Biol. Chem. 283, 5738-5747.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 5738-5747
-
-
Mitobe, J.1
Morita-Ishihara, T.2
Ishihama, A.3
Watanabe, H.4
-
56
-
-
72049119860
-
A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides
-
Moon, K., and Gottesman, S. (2009). A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides. Mol. Microbiol. 74, 1314-1330.
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 1314-1330
-
-
Moon, K.1
Gottesman, S.2
-
57
-
-
0029113833
-
Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII
-
Morfeldt, E., Taylor, D., von Gabain, A., and Arvidson, S. (1995). Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII. EMBO J. 14, 4569-4577.
-
(1995)
EMBO J.
, vol.14
, pp. 4569-4577
-
-
Morfeldt, E.1
Taylor, D.2
Von Gabain, A.3
Arvidson, S.4
-
58
-
-
77954079519
-
Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways
-
10.1371/ journal.ppat.1000865
-
Mulhbacher, J., Brouillette, E., Allard, M., Fortier, L.C., Malouin, F., and Lafontaine, D.A. (2010). Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways. PLoS Pathog. 6, e1000865. 10.1371/ journal.ppat.1000865.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Mulhbacher, J.1
Brouillette, E.2
Allard, M.3
Fortier, L.C.4
Malouin, F.5
Lafontaine, D.A.6
-
59
-
-
53249156098
-
Hfq regulates the expression of the thermostable direct hemolysin gene in Vibrio parahaemolyticus
-
Nakano, M., Takahashi, A., Su, Z., Harada, N., Mawatari, K., and Nakaya, Y.(2008). Hfq regulates the expression of the thermostable direct hemolysin gene in Vibrio parahaemolyticus. BMC Microbiol. 8, 155.
-
(2008)
BMC Microbiol.
, vol.8
, pp. 155
-
-
Nakano, M.1
Takahashi, A.2
Su, Z.3
Harada, N.4
Mawatari, K.5
Nakaya, Y.6
-
60
-
-
0029417015
-
Yst gene expression in Yersinia enterocolitica is positively regulated by a chromosomal region that is highly homologous to Escherichia coli host factor 1 gene (hfq)
-
Nakao, H., Watanabe, H., Nakayama, S., and Takeda, T. (1995). yst gene expression in Yersinia enterocolitica is positively regulated by a chromosomal region that is highly homologous to Escherichia coli host factor 1 gene (hfq). Mol. Microbiol. 18, 859-865.
-
(1995)
Mol. Microbiol.
, vol.18
, pp. 859-865
-
-
Nakao, H.1
Watanabe, H.2
Nakayama, S.3
Takeda, T.4
-
61
-
-
34250724903
-
Silencing of xenogeneic DNA by H-NS - Facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA
-
DOI 10.1101/gad.1543107
-
Navarre, W.W., McClelland, M., Libby, S.J., and Fang, F.C. (2007). Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA. Genes Dev. 21, 1456-1471. (Pubitemid 46955718)
-
(2007)
Genes and Development
, vol.21
, Issue.12
, pp. 1456-1471
-
-
Navarre, W.W.1
McClelland, M.2
Libby, S.J.3
Fang, F.C.4
-
62
-
-
72749118512
-
A pH-responsive riboregulator
-
Nechooshtan, G., Elgrably-Weiss, M., Sheaffer, A., Westhof, E., and Altuvia, S. (2009). A pH-responsive riboregulator. Genes Dev. 23, 2650-2662.
-
(2009)
Genes Dev.
, vol.23
, pp. 2650-2662
-
-
Nechooshtan, G.1
Elgrably-Weiss, M.2
Sheaffer, A.3
Westhof, E.4
Altuvia, S.5
-
63
-
-
77949481723
-
Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery
-
Neusser, T., Polen, T., Geissen, R., and Wagner, R. (2010). Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery. BMC Genomics 11, 165.
-
(2010)
BMC Genomics
, vol.11
, pp. 165
-
-
Neusser, T.1
Polen, T.2
Geissen, R.3
Wagner, R.4
-
64
-
-
77950356238
-
Defining a role for Hfq in Gram-positive bacteria: Evidence for Hfq-dependent antisense regulation in Listeria monocytogenes
-
Nielsen, J.S., Lei, L.K., Ebersbach, T., Olsen, A.S., Klitgaard, J.K., Valentin- Hansen, P., and Kallipolitis, B.H. (2009). Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes. Nucleic Acids Res. 38, 907-919.
-
(2009)
Nucleic Acids Res.
, vol.38
, pp. 907-919
-
-
Nielsen, J.S.1
Lei, L.K.2
Ebersbach, T.3
Olsen, A.S.4
Klitgaard, J.K.5
Valentin- Hansen, P.6
Kallipolitis, B.H.7
-
65
-
-
58549096736
-
Quorum sensing in staphylococci
-
Novick, R.P., and Geisinger, E. (2008). Quorum sensing in staphylococci. Annu. Rev. Genet. 42, 541-564.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 541-564
-
-
Novick, R.P.1
Geisinger, E.2
-
66
-
-
0027180031
-
Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule
-
Novick, R.P., Ross, H.F., Projan, S.J., Kornblum, J., Kreiswirth, B., and Moghazeh, S. (1993). Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule. EMBO J. 12, 3967-3975. (Pubitemid 23282772)
-
(1993)
EMBO Journal
, vol.12
, Issue.10
, pp. 3967-3975
-
-
Novick, R.P.1
Ross, H.F.2
Projan, S.J.3
Kornblum, J.4
Kreiswirth, B.5
Moghazeh, S.6
-
67
-
-
33645765576
-
A role for the SmpB-SsrA system in Yersinia pseudotuberculosis pathogenesis
-
10.1371/journal.ppat.0020006
-
Okan, N.A., Bliska, J.B., and Karzai, A.W. (2006). A role for the SmpB-SsrA system in Yersinia pseudotuberculosis pathogenesis. PLoS Pathog. 2, e6. 10.1371/journal.ppat.0020006.
-
(2006)
PLoS Pathog.
, vol.2
-
-
Okan, N.A.1
Bliska, J.B.2
Karzai, A.W.3
-
68
-
-
57349187890
-
Characterization of genes regulated directly by the VirR/VirS system in Clostridium perfringens
-
Okumura, K., Ohtani, K., Hayashi, H., and Shimizu, T. (2008). Characterization of genes regulated directly by the VirR/VirS system in Clostridium perfringens. J. Bacteriol. 190, 7719-7727.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 7719-7727
-
-
Okumura, K.1
Ohtani, K.2
Hayashi, H.3
Shimizu, T.4
-
69
-
-
41849139346
-
Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
-
DOI 10.1093/nar/gkn050
-
Padalon-Brauch, G., Hershberg, R., Elgrably-Weiss, M., Baruch, K., Rosenshine, I., Margalit, H., and Altuvia, S. (2008). Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence. Nucleic Acids Res. 36, 1913-1927. (Pubitemid 351494235)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.6
, pp. 1913-1927
-
-
Padalon-Brauch, G.1
Hershberg, R.2
Elgrably-Weiss, M.3
Baruch, K.4
Rosenshine, I.5
Margalit, H.6
Altuvia, S.7
-
70
-
-
67349192582
-
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level
-
Papenfort, K., and Vogel, J. (2009). Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res. Microbiol. 160, 278-287.
-
(2009)
Res. Microbiol.
, vol.160
, pp. 278-287
-
-
Papenfort, K.1
Vogel, J.2
-
71
-
-
33751383274
-
E-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
-
DOI 10.1111/j.1365-2958.2006.05524.x
-
Papenfort, K., Pfeiffer, V., Mika, F., Lucchini, S., Hinton, J.C., and Vogel, J. (2006). sigma(E)-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol. Microbiol. 62, 1674-1688. (Pubitemid 44813812)
-
(2006)
Molecular Microbiology
, vol.62
, Issue.6
, pp. 1674-1688
-
-
Papenfort, K.1
Pfeiffer, V.2
Mika, F.3
Lucchini, S.4
Hinton, J.C.D.5
Vogel, J.6
-
72
-
-
70350176597
-
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
-
Papenfort, K., Said, N., Welsink, T., Lucchini, S., Hinton, J.C., and Vogel, J. (2009). Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol. Microbiol. 74, 139-158.
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 139-158
-
-
Papenfort, K.1
Said, N.2
Welsink, T.3
Lucchini, S.4
Hinton, J.C.5
Vogel, J.6
-
73
-
-
0034748355
-
The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosa
-
DOI 10.1128/JB.183.22.6676-6683.2001
-
Pessi, G., Williams, F., Hindle, Z., Heurlier, K., Holden, M.T., Camara, M., Haas, D., and Williams, P. (2001). The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosa. J. Bacteriol. 183, 6676-6683. (Pubitemid 33026760)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.22
, pp. 6676-6683
-
-
Pessi, G.1
Williams, F.2
Hindle, Z.3
Heurlier, K.4
Holden, M.T.G.5
Camara, M.6
Haas, D.7
Williams, P.8
-
74
-
-
36148969305
-
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
-
DOI 10.1111/j.1365-2958.2007.05991.x
-
Pfeiffer, V., Sittka, A., Tomer, R., Tedin, K., Brinkmann, V., and Vogel, J. (2007). A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol. Microbiol. 66, 1174-1191. (Pubitemid 350115025)
-
(2007)
Molecular Microbiology
, vol.66
, Issue.5
, pp. 1174-1191
-
-
Pfeiffer, V.1
Sittka, A.2
Tomer, R.3
Tedin, K.4
Brinkmann, V.5
Vogel, J.6
-
75
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
Pfeiffer, V., Papenfort, K., Lucchini, S., Hinton, J.C., and Vogel, J. (2009). Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat. Struct. Mol. Biol. 16, 840-846.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.4
Vogel, J.5
-
76
-
-
65549169936
-
The LetA-RsmYZ-CsrA regulatory cascade, together with RpoS and PmrA, post-transcriptionally regulates stationary phase activation of Legionella pneumophila Icm/Dot effectors
-
Rasis, M., and Segal, G. (2009). The LetA-RsmYZ-CsrA regulatory cascade, together with RpoS and PmrA, post-transcriptionally regulates stationary phase activation of Legionella pneumophila Icm/Dot effectors. Mol. Microbiol. 72, 995-1010.
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 995-1010
-
-
Rasis, M.1
Segal, G.2
-
77
-
-
77954360115
-
Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution
-
Rinnenthal, J., Klinkert, B., Narberhaus, F., and Schwalbe, H. (2010). Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution. Nucleic Acids Res. 38, 3834-3847.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3834-3847
-
-
Rinnenthal, J.1
Klinkert, B.2
Narberhaus, F.3
Schwalbe, H.4
-
78
-
-
36549029160
-
RivR and the small RNA RivX: The missing links between the CovR regulatory cascade and the Mga regulon
-
DOI 10.1111/j.1365-2958.2007.06015.x
-
Roberts, S.A., and Scott, J.R. (2007). RivR and the small RNA RivX: the missing links between the CovR regulatory cascade and the Mga regulon. Mol. Microbiol. 66, 1506-1522. (Pubitemid 350179684)
-
(2007)
Molecular Microbiology
, vol.66
, Issue.6
, pp. 1506-1522
-
-
Roberts, S.A.1
Scott, J.R.2
-
79
-
-
67650713931
-
The structural and functional diversity of metabolite-binding riboswitches
-
Roth, A., and Breaker, R.R. (2009). The structural and functional diversity of metabolite-binding riboswitches. Annu. Rev. Biochem. 78, 305-334.
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 305-334
-
-
Roth, A.1
Breaker, R.R.2
-
80
-
-
65349151312
-
Two small ncRNAs jointly govern virulence and transmission in Legionella pneumophila
-
Sahr, T., Bruggemann, H., Jules, M., Lomma, M., Albert-Weissenberger, C., Cazalet, C., and Buchrieser, C. (2009). Two small ncRNAs jointly govern virulence and transmission in Legionella pneumophila. Mol. Microbiol. 72, 741-762.
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 741-762
-
-
Sahr, T.1
Bruggemann, H.2
Jules, M.3
Lomma, M.4
Albert-Weissenberger, C.5
Cazalet, C.6
Buchrieser, C.7
-
81
-
-
69349099557
-
Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice
-
10.1371/journal.ppat.1000477
-
Santiviago, C.A., Reynolds, M.M., Porwollik, S., Choi, S.H., Long, F., Andrews- Polymenis, H.L., and McClelland, M. (2009). Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice. PLoS Pathog. 5, e1000477. 10.1371/journal. ppat.1000477
-
(2009)
PLoS Pathog.
, vol.5
-
-
Santiviago, C.A.1
Reynolds, M.M.2
Porwollik, S.3
Choi, S.H.4
Long, F.5
Andrews-Polymenis, H.L.6
McClelland, M.7
-
82
-
-
77951226115
-
The small RNA chaperone Hfq is required for the virulence of Yersinia pseudotuberculosis
-
Schiano, C.A., Bellows, L.E., and Lathem, W.W. (2010). The small RNA chaperone Hfq is required for the virulence of Yersinia pseudotuberculosis. Infect. Immun. 78, 2034-2044.
-
(2010)
Infect. Immun.
, vol.78
, pp. 2034-2044
-
-
Schiano, C.A.1
Bellows, L.E.2
Lathem, W.W.3
-
83
-
-
34548499897
-
The PrfA virulence regulon
-
DOI 10.1016/j.micinf.2007.05.007, PII S1286457907001839, Forum on Listeria From Genomics to Pathagonesis
-
Scortti, M., Monzo, H.J., Lacharme-Lora, L., Lewis, D.A., and Vazquez-Boland, J.A. (2007). The PrfA virulence regulon. Microbes Infect. 9, 1196-1207. (Pubitemid 47375147)
-
(2007)
Microbes and Infection
, vol.9
, Issue.10
, pp. 1196-1207
-
-
Scortti, M.1
Monzo, H.J.2
Lacharme-Lora, L.3
Lewis, D.A.4
Vazquez-Boland, J.A.5
-
84
-
-
70349917541
-
Hfq negatively regulates type III secretion in EHEC and several other pathogens
-
Shakhnovich, E.A., Davis, B.M., and Waldor, M.K. (2009). Hfq negatively regulates type III secretion in EHEC and several other pathogens. Mol. Microbiol. 74, 347-363.
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 347-363
-
-
Shakhnovich, E.A.1
Davis, B.M.2
Waldor, M.K.3
-
85
-
-
70349736084
-
Experimental approaches for the discovery and characterization of regulatory small RNA
-
Sharma, C.M., and Vogel, J. (2009). Experimental approaches for the discovery and characterization of regulatory small RNA. Curr. Opin. Microbiol. 12, 536-546.
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 536-546
-
-
Sharma, C.M.1
Vogel, J.2
-
86
-
-
35948970194
-
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
-
DOI 10.1101/gad.447207
-
Sharma, C.M., Darfeuille, F., Plantinga, T.H., and Vogel, J. (2007). A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev. 21, 2804-2817. (Pubitemid 350070725)
-
(2007)
Genes and Development
, vol.21
, Issue.21
, pp. 2804-2817
-
-
Sharma, C.M.1
Darfeuille, F.2
Plantinga, T.H.3
Vogel, J.4
-
87
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
Sharma, C.M., Hoffmann, S., Darfeuille, F., Reignier, J., Findeiss, S., Sittka, A., Chabas, S., Reiche, K., Hackermuller, J., Reinhardt, R., et al. (2010). The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464, 250-255.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
Sittka, A.6
Chabas, S.7
Reiche, K.8
Hackermuller, J.9
Reinhardt, R.10
-
88
-
-
33845713571
-
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
-
DOI 10.1111/j.1365-2958.2006.05489.x
-
Sittka, A., Pfeiffer, V., Tedin, K., and Vogel, J. (2007). The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol. Microbiol. 63, 193-217. (Pubitemid 44968119)
-
(2007)
Molecular Microbiology
, vol.63
, Issue.1
, pp. 193-217
-
-
Sittka, A.1
Pfeiffer, V.2
Tedin, K.3
Vogel, J.4
-
89
-
-
50849105413
-
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
-
10.1371/journal.pgen.1000163
-
Sittka, A., Lucchini, S., Papenfort, K., Sharma, C.M., Rolle, K., Binnewies, T.T., Hinton, J.C., and Vogel, J. (2008). Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet. 4, e1000163. 10.1371/journal.pgen.1000163.
-
(2008)
PLoS Genet.
, vol.4
-
-
Sittka, A.1
Lucchini, S.2
Papenfort, K.3
Sharma, C.M.4
Rolle, K.5
Binnewies, T.T.6
Hinton, J.C.7
Vogel, J.8
-
90
-
-
51649090185
-
A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles
-
Song, T., Mika, F., Lindmark, B., Liu, Z., Schild, S., Bishop, A., Zhu, J., Camilli, A., Johansson, J., Vogel, J., and Wai, S.N. (2008). A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles. Mol. Microbiol. 70, 100-111.
-
(2008)
Mol. Microbiol.
, vol.70
, pp. 100-111
-
-
Song, T.1
Mika, F.2
Lindmark, B.3
Liu, Z.4
Schild, S.5
Bishop, A.6
Zhu, J.7
Camilli, A.8
Johansson, J.9
Vogel, J.10
Wai, S.N.11
-
91
-
-
0141681868
-
Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1
-
DOI 10.1016/S0882-4010(03)00149-9
-
Sonnleitner, E., Hagens, S., Rosenau, F., Wilhelm, S., Habel, A., Jager, K.E., and Blasi, U. (2003). Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1. Microb. Pathog. 35, 217-228. (Pubitemid 37163722)
-
(2003)
Microbial Pathogenesis
, vol.35
, Issue.5
, pp. 217-228
-
-
Sonnleitner, E.1
Hagens, S.2
Rosenau, F.3
Wilhelm, S.4
Habel, A.5
Jager, K.-E.6
Blasi, U.7
-
92
-
-
33645065354
-
Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa
-
Sonnleitner, E., Schuster, M., Sorger-Domenigg, T., Greenberg, E.P., and Blasi, U. (2006). Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa. Mol. Microbiol. 59, 1542-1558.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1542-1558
-
-
Sonnleitner, E.1
Schuster, M.2
Sorger-Domenigg, T.3
Greenberg, E.P.4
Blasi, U.5
-
93
-
-
76049120271
-
Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa
-
Sonnleitner, E., Abdou, L., and Haas, D. (2009). Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 106, 21866-21871.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 21866-21871
-
-
Sonnleitner, E.1
Abdou, L.2
Haas, D.3
-
94
-
-
77953090678
-
Positive regulation by small RNAs and the role of Hfq
-
press
-
Soper, T., Mandin, P., Majdalani, N., Gottesman, S., and Woodson, S.A. (2010). Positive regulation by small RNAs and the role of Hfq. Proc. Natl. Acad. Sci. USA, in press.
-
(2010)
Proc. Natl. Acad. Sci. USA
-
-
Soper, T.1
Mandin, P.2
Majdalani, N.3
Gottesman, S.4
Woodson, S.A.5
-
95
-
-
72849114230
-
Prokaryotic transcriptomics: A new view on regulation, physiology and pathogenicity
-
Sorek, R., and Cossart, P. (2009). Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nat. Rev. Genet. 11, 9-16.
-
(2009)
Nat. Rev. Genet.
, vol.11
, pp. 9-16
-
-
Sorek, R.1
Cossart, P.2
-
96
-
-
0035212493
-
RelA-independent amino acid starvation response network of Streptococcus pyogenes
-
DOI 10.1128/JB.183.24.7354-7364.2001
-
Steiner, K., and Malke, H. (2001). relA-Independent amino acid starvation response network of Streptococcus pyogenes. J. Bacteriol. 183, 7354-7364. (Pubitemid 33121869)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.24
, pp. 7354-7364
-
-
Steiner, K.1
Malke, H.2
-
97
-
-
34247560793
-
Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA
-
DOI 10.1128/JB.00619-06
-
Stork, M., Di Lorenzo, M., Welch, T.J., and Crosa, J.H. (2007). Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA. J. Bacteriol. 189, 3479-3488. (Pubitemid 46668812)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.9
, pp. 3479-3488
-
-
Stork, M.1
Di Lorenzo, M.2
Welch, T.J.3
Crosa, J.H.4
-
98
-
-
47749152941
-
Riboswitches in eubacteria sense the second messenger cyclic Di-GMP
-
DOI 10.1126/science.1159519
-
Sudarsan, N., Lee, E.R., Weinberg, Z., Moy, R.H., Kim, J.N., Link, K.H., and Breaker, R.R. (2008). Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321, 411-413. (Pubitemid 352029978)
-
(2008)
Science
, vol.321
, Issue.5887
, pp. 411-413
-
-
Sudarsan, N.1
Lee, E.R.2
Weinberg, Z.3
Moy, R.H.4
Kim, J.N.5
Link, K.H.6
Breaker, R.R.7
-
99
-
-
60549089721
-
Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing
-
Svenningsen, S.L., Tu, K.C., and Bassler, B.L. (2009). Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing. EMBO J. 28, 429-439.
-
(2009)
EMBO J.
, vol.28
, pp. 429-439
-
-
Svenningsen, S.L.1
Tu, K.C.2
Bassler, B.L.3
-
100
-
-
56849098856
-
Trans-translation in Helicobacter pylori: Essentiality of ribosome rescue and requirement of protein tagging for stress resistance and competence
-
10.1371/ journal.pone.0003810
-
Thibonnier, M., Thiberge, J.M., and De Reuse, H. (2008). Trans-translation in Helicobacter pylori: essentiality of ribosome rescue and requirement of protein tagging for stress resistance and competence. PLoS ONE 3, e3810. 10.1371/ journal.pone.0003810.
-
(2008)
PLoS ONE
, vol.3
-
-
Thibonnier, M.1
Thiberge, J.M.2
De Reuse, H.3
-
101
-
-
67649268395
-
The Listeria transcriptional landscape from saprophytism to virulence
-
Toledo-Arana, A., Dussurget, O., Nikitas, G., Sesto, N., Guet-Revillet, H., Balestrino, D., Loh, E., Gripenland, J., Tiensuu, T., Vaitkevicius, K., et al. (2009). The Listeria transcriptional landscape from saprophytism to virulence. Nature 459, 950-956.
-
(2009)
Nature
, vol.459
, pp. 950-956
-
-
Toledo-Arana, A.1
Dussurget, O.2
Nikitas, G.3
Sesto, N.4
Guet-Revillet, H.5
Balestrino, D.6
Loh, E.7
Gripenland, J.8
Tiensuu, T.9
Vaitkevicius, K.10
-
102
-
-
76849115266
-
Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response
-
Tu, K.C., Long, T., Svenningsen, S.L., Wingreen, N.S., and Bassler, B.L. (2010). Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response. Mol. Cell 37, 567-579.
-
(2010)
Mol. Cell
, vol.37
, pp. 567-579
-
-
Tu, K.C.1
Long, T.2
Svenningsen, S.L.3
Wingreen, N.S.4
Bassler, B.L.5
-
103
-
-
1642565815
-
The bacterial Sm-like protein Hfq: A key player in RNA transactions
-
DOI 10.1111/j.1365-2958.2003.03935.x
-
Valentin-Hansen, P., Eriksen, M., and Udesen, C. (2004). The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol. Microbiol. 51, 1525-1533. (Pubitemid 38406529)
-
(2004)
Molecular Microbiology
, vol.51
, Issue.6
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
104
-
-
58149139033
-
A rough guide to the noncoding RNA world of Salmonella
-
Vogel, J. (2009). A rough guide to the noncoding RNA world of Salmonella. Mol. Microbiol. 71, 1-11.
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 1-11
-
-
Vogel, J.1
-
105
-
-
0344237410
-
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
-
DOI 10.1093/nar/gkg867
-
Vogel, J., Bartels, V., Tang, T.H., Churakov, G., Slagter-Jager, J.G., Hüttenhofer, A., and Wagner, E.G. (2003). RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res. 31, 6435-6443. (Pubitemid 37508747)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.22
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jager, J.G.5
Huttenhofer, A.6
Wagner, E.G.H.7
-
106
-
-
70449725229
-
Characterization of homologs of the small RNA SgrS reveals diversity in function
-
Wadler, C.S., and Vanderpool, C.K. (2009). Characterization of homologs of the small RNA SgrS reveals diversity in function. Nucleic Acids Res. 37, 5477-5485.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5477-5485
-
-
Wadler, C.S.1
Vanderpool, C.K.2
-
107
-
-
0036371843
-
Antisense RNAs in bacteria and their genetic elements
-
Wagner, E.G., Altuvia, S., and Romby, P. (2002). Antisense RNAs in bacteria and their genetic elements. Adv. Genet. 46, 361-398.
-
(2002)
Adv. Genet.
, vol.46
, pp. 361-398
-
-
Wagner, E.G.1
Altuvia, S.2
Romby, P.3
-
108
-
-
34548348934
-
6S RNA: A regulator of transcription
-
DOI 10.1111/j.1365-2958.2007.05894.x
-
Wassarman, K.M. (2007). 6S RNA: a regulator of transcription. Mol. Microbiol. 65, 1425-1431. (Pubitemid 47347838)
-
(2007)
Molecular Microbiology
, vol.65
, Issue.6
, pp. 1425-1431
-
-
Wassarman, K.M.1
-
109
-
-
0034625237
-
6S RNA regulates E. coli RNA polymerase activity
-
Wassarman, K.M., and Storz, G. (2000). 6S RNA regulates E. coli RNA polymerase activity. Cell 101, 613-623.
-
(2000)
Cell
, vol.101
, pp. 613-623
-
-
Wassarman, K.M.1
Storz, G.2
-
110
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters, L.S., and Storz, G. (2009). Regulatory RNAs in bacteria. Cell 136, 615-628.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
111
-
-
58149479228
-
Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa
-
Zegans, M.E., Wagner, J.C., Cady, K.C., Murphy, D.M., Hammond, J.H., and O'Toole, G.A. (2009). Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa. J. Bacteriol. 191, 210-219.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 210-219
-
-
Zegans, M.E.1
Wagner, J.C.2
Cady, K.C.3
Murphy, D.M.4
Hammond, J.H.5
O'Toole, G.A.6
|