Proteomic analysis of grapevine stem in response to Xylella fastidiosa inoculation

Physiological and Molecular Plant Pathology

Volumn 75, Issue 3, 2011, Pages 90-99

  Yang, Litao ^a,b   Lin, Hong ^a   Takahashi, Yuri ^c,d   Chen, Feng ^e   Walker, M Andrew ^d   Civerolo, Edwin L ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b GUANGXI UNIVERSITY   (China)

^c Ehime Women's College   (Japan)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e UNIVERSITY OF TENNESSEE   (United States)

Author keywords

Grapevine; Mass spectrometry; Pierce's disease; Proteins; Resistance; Susceptible; Two dimensional gel electrophoresis

Indexed keywords

BACTERIA (MICROORGANISMS); VITACEAE; VITIS; VITIS ARIZONICA; VITIS RUPESTRIS; XYLELLA FASTIDIOSA;

EID: 79151475543     PISSN: 08855765     EISSN: 10961178     Source Type: Journal    
DOI: 10.1016/j.pmpp.2010.11.002     Document Type: Article

References (82)

1. Hopkins D.L., Purcell A.H. Xylella fastidiosa: cause of Pierce's disease of grapevine and other emergent diseases. Plant Dis 2002, 86:1056-1066.
2. Mortensen J.A., Stover L.H., Balerdi C.F. Sources of resistance to Pierce's disease in Vitis. J Am Soc Hort Sci 1977, 102:695-697.
3. Halbrooks M.C., Mortensen J.A. Origin and significance of Florida hybrid bunch grapes and rootstocks. HortScience 1989, 24:546-550.
4. Krivanek A.F., Riaz S., Walker M.A. Identification and molecular mapping of PdR1, a primary resistance gene to Pierce's disease in Vitis. Theor Appl Genet 2006, 112:1125-1131.
5. Riaz S., Krivanek A.F., Xu K., Walker M.A. Refined mapping of the Pierce's disease resistance locus, PdR1 and Sex on an extended genetic map of Vitis rupestris × Vitis arizonica. Theor Appl Genet 2006, 113:1317-1329.
6. Riaz S., Tenscher A.C., Rubin J., Graziani R., Pao S.S., Walker M.A. Fine-scale genetic mapping of two Pierce's disease resistance loci and a major segregation distortion region on chromosome 14 of grape. Theor Appl Genet 2008, 117:671-681.
7. Lu J, Huang H, Bradeley F, Huanter W, Dang P. Identification and functional annotation of unique EST sequences between Vitis shuttleworthii and V. vinifera grapes. Plant & Animal Genomes XIV Conference. p18, San Diego, CA, 2006. January 14-18.
8. Lin H., Doddapaneni H., Takahashi Y., Walker M.A. Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection. BMC Plant Biol 2007, 7:8.
9. Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE 2007, 2:e1326.
10. Doddapaneni H., Lin H., Walker M.A., Yao J., Civerolo E.L. Vitis ExpDB: a database resource for grape functional genomics. BMC Plant Biol 2008, 8:23.
11. Anderson L., Seilhamer J. A comparison of selected mRNA and protein abundances in human liver. Electrophoresis 1997, 18:533-537.
12. Dóczi R., Brader G., Pettkó-Szandtner A., Rajh I., Djamei A., Pitzschke A., et al. The Arabidopsis mitogen-activated protein kinase kinase MKK3 is upstream of group C mitogen-activated protein kinases and participates in pathogen signaling. Plant Cell 2007, 19:3266-3279.
13. Jones A.M., Bennett M.H., Mansfield J.W., Grant M. Analysis of the defence phosphoproteome of Arabidopsis thaliana using differential mass tagging. Proteomics 2006, 6:4155-4165.
14. Delauré S.L., Hemelrijck W.V., Bolle M.F.C.D., Cammue B.P.A., Coninck B.M.A.D. Building up plant defenses by breaking down proteins. Plant Sci 2008, 174:375-385.
15. Lecker S.H., Goldberg A.L., Mitch W.E. Protein degradation by the Ubiquitin-Proteasome pathway in normal and disease states. Am Soc Nephrol 2006, 17:1807-1819.
16. Xiong Y., Contento A.L., Nguyen P.Q., Bassham D.C. Degradation of oxidized proteins by autophagy during oxidative stress in Arabidopsis. Plant Phys 2007, 143:291-299.
17. Guo A., Reimers P.J., Leach J.E. Effect of light on incompatible interactions between Xanthomonas oryzae pv oryzae and rice. Physiol Mol Plant Pathol 1993, 42:413-425.
18. Young S.A., Cuo A., Cuikema J.A., Whit F.F., Leach J.E. Rice Cationic peroxidase accumulates in xylem vessels during incompatible interactions with Xanthomonas oryzae Pv. oryzae. Plant Physiol 1995, 107:1333-1341.
19. Martin G.B., Bogdanove A.J., Sessa G. Understanding the functions of plant disease resistance proteins. Annu Rev Plant Biol 2003, 54:23-61.
20. Speicher D.W. Proteomics: an infinite problem with infinite potential. The Scientist 2002, 16:12.
21. Salekdeh G.H., Siopongco J., Wade L.J., Ghareyazie B., Bennett J. Proteomic analysis of rice leaves during drought stress and recovery. Proteomics 2002, 2:1131-1145.
22. Salekdeh G.H., Siopongco J., Wade L.J., Ghareyazie B., Bennett J. A proteomic approach to analyzing drought- and salt-responsiveness in rice. Field Crops Res 2002, 199-219.
23. Ukaji N., Kuwabara C., Takezawa D., Arakawa K., Yoshida S., Fujikawa S. Accumulation of small heat-shock protein homologs in the endoplasmic reticulum of cortical parenchyma cells in mulberry in association with seasonal cold acclimation. Plant Physiol 1999, 120:481-490.
24. Suzuki K., Itai R., Suzuki K., Nakanishi H., Nishizawa N.K., Yoshimura E., et al. Formate dehydrogenase, an enzyme of anaerobic metabolism, is induced by iron deficiency in barley roots. Plant Physiol 1998, 116:725-732.
25. Rakwal R., Agrawal G.K., Kubo A., Yonekura M., Tamogami S., Saji H., et al. Defence/stress responses elicited in rice seedlings exposed to the gaseous air pollutant sulfurdioxide. Env Exp Bot 2003, 49:223-235.
26. Fecht-Christoffers M.M., Braun H.P., Lemaitre-Guillier C., VanDorsselaer A., Horst W.J. Effect of manganese toxicity on the proteome of the leaf apoplast in cowpea. Plant Physiol 2003, 133:1935-1946.
27. Chen F., Yuan Y., Li Q., He Z. Proteomic analysis of rice plasma membrane reveals proteins involved in early defense response to bacterial blight. Proteomics 2007, 7:1529-1539.
28. Gómez-Ariza J., Campo S., Rufat M., Estopà M., Messeguer J., Segundo B.S. Coca M Sucrose-mediated priming of plant defense responses and broad-spectrum disease resistance nby overexpression of the maize pathogenesis-related PRms protein in rice plants. MPMI 2007, 20:832-842.
29. Brizard J.P., Carapito C., Delalande F., Van Dorsselaer A., Brugidou C. Proteome analysis of plant-virus interactome: comprehensive data for virus multiplication inside their hosts. Mol Cell Proteom 2006, 5:2279-2297.
30. Rampitsch C., Bykova N.V., McCallum B., Beimcik E., Ens W. Analysis of the wheat and Puccinia triticina (leaf rust) proteomes during a susceptible host-pathogen interaction. Proteomics 2006, 6:1897-1907.
31. Castro A.J., Carapito C., Zorn N., Magné C., Leize E., Van Dorsselaer A., et al. Proteomic analysis of grapevine (Vitis vinifera L.) tissues subjected to herbicide stress. J Exp Bot 2005, 56:2783-2795.
32. Smolka M.B., Martins D., Winck F.V., Santoro C.E., Castellari R.R., Ferrari F., et al. Proteome analysis of the plant pathogen Xylella fastidiosa reveals major cellular and extracellular proteins and a peculiar codon bias distribution. Proteomics 2003, 3:224-237.
33. Monteiro S., Piçarra-Pereira M.A., Loureiro V.B., Teixeira A.R., Ferreira R.B. The diversity of pathogenesis-related proteins decreases during grape maturation. Phytochemistry 2007, 68:416-425.
34. Bellato C.M., Garcia A.K.M., Mestrinelli F., Tsai S.M., Machado M.A., Meinhardt L.W. The induction of differentially expressed proteins of Xylella fastidiosa with citrus extract. Braz J Microbiol 2004, 35:235-242.
35. Purcino R.P., Medina C.L., de Souza D.M., Winck F.V., Machado E.C., Novello J.C., et al. Xylella fastidiosa disturbs nitrogen metabolism and causes a stress response in sweet orange Citrus sinensis cv. Pêra. J Exp Bot 2007, 58:2733-2744.
36. Riaz S., Tenscher A.C., Graziani R., Krivanek A.F., Ramming D.W., Walker M.A. Using marker-assisted selection to breed Pierce's disease-resistant grapes. Am J Enol Vitic 2009, 60:199-207.
37. Davis M.J., French W.J., Schaad N.W. Axenic culture of the bacteria associated with phony disease of peach and plum leaf scald. Curr Microbiol 1981, 5:311-316.
38. Van Etten J.L., Freer S.N., McCune B.K. Presence of a major (storage) protein in dormant spores of the fungus Botryodiplodia theobromae. J Bacteriol 1979, 138:650-652.
39. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72:248-254.
40. Craig R., Cortens J.P., Beavis R.C. Open source system for analyzing, validating, and storing protein identification data. J Proteome Res 2004, 3:1234-1242.
41. Trojanek J.B., Klimecka M.M., Fraser A., Dobrowolska G., Muszyńska G. Characterization of dual specificity protein kinase from maize seedlings. Acta Biochim Pol 2004, 51:635-647.
42. Kirvanek A.F., Walker M.A. Vitis resistance to Pierce's disease is characterized by differential Xylella fastidiosa populations in stems and leaves. Phytopathology 2005, 95:44-52.
43. Xu H., Yang L., Xu P., Tao Y., Ma Z. cTrans: generating polypeptide databases from cDNA sequences. Proteomics 2007, 7:177-179.
44. Garcia-Casado G., Collada C., Allona I., Soto A., Casado R., Rodriguez-Cerezo E., et al. Characterization of an apoplastic basic thaumatin-like protein from recalcitrant chestnut seeds. Physiol Plant 2001, 110:172-180.
45. Monteiro S., Barakat M., Piçarra-Pereira M.A., Teixeira A.R., Ferreira R.B. Osmotin and thaumatin from grape: a putative general defense mechanism against pathogenic fungi. Phytopathol 2003, 93:1505-1512.
46. Hopkins D.L. Xylella fastidiosa: xylem-limited bacterial pathogen of plants. Annu Rev Phytopathol 1989, 27:271-290.
47. Thorne E.T., Stevenson J.F., Rost T.L., Labavitch J.M., Matthews M.A. Pierce's disease symptoms: comparison with symptoms of water deficit and the impact of water deficits. Am J Enol Vitic 2006, 57:1-11.
48. Basha S.M., Mazhar H., Vasanthaiah H.K. Proteomics approach to identify unique xylem sap proteins in Pierce's disease-tolerant Vitis species. Appl Biochem Biotechnol 2010, 160(3):932-944.
49. Mahmood T., Jan A., Kakishima M., Komatsu S. Proteomic analysis of bacterial blight defense-responsive proteins in rice leaf blades. Proteomics 2006, 6:6053-6065.
50. Mahmood T., Jan A., Komatsu S. Proteomic analysis of bacterial blight defence signalling pathway using transgenic rice overexpressing thaumatin-like protein. Biol Plant 2009, 53:285-293.
51. Finnie C., Bak-Jensen K.S., Laugesen S., Roepstorff P., Svensson B. Differential appearance of isoforms and cultivar variation in protein temporal profiles revealed in the maturing barley grain proteome. Plant Sci 2006, 170:4808-4821.
52. Gorjanović S., Beljanski M.V., Gavrović-Jankulović M., Gojgić-Cvijović G., Pavlović M.D., Bejosano F. Antimicrobial activity of malting barley grain thaumatin-like protein isoforms, S and R. J Inst Brew 2007, 113:206-212.
53. Reiss E., Horstmann C. Drechslera teres-infected barley (Hordeum vulgare L.) leaves accumulated eight isoforms of thaumatin-like proteins. Physiol Mol Plant Pathol 2001, 58:183-188.
54. Lin K.C., Bushnell W.R., Szabo L.J., Smith A.G. Isolation and expression of a host response gene family encoding thaumatin-like proteins in incompatible oat-stem rust fungus intersections. Molec Plant-Microbe Intera 1996, 9:511-522.
55. Chadha P., Das R.H. A pathogenesis related protein, AhPR10 from peanut: an insight of its mode of antifungal activity. Planta 2006, 225:213-222.
56. Bantignies B., Séguin J., Muzac I., Dédaldéchamp F., Gulick P., Ibrahim R. Direct evidence for ribonucleolytic activity of a PR-10-like protein from white lupin roots. Plant Mol Biol 2000, 42:871-881.
57. Park C.J., Kim K.J., Shin R., Park J.M., Shin Y.C., Paek K.H. Pathogenesis-related protein 10 isolated from hot pepper functions as a ribonuclease in an antiviral pathway. Plant J 2004, 37:186-198.
58. Davies C., Robinson S.P. Differential screening indicates a dramatic change in mRNA profiles during grape berry ripening. Cloning and characterization of cDNAs encoding putative cell wall and stress response proteins. Plant Physiol 2000, 122:803-812.
59. Itai A., Tanabe K., Tamura F., Tanaka T. Isolation of cDNA clones corresponding to genes expressed during fruit ripening in Japanese pear (Pyrus pyrifolia Nakai): involvement of the ethylene signal transduction pathway in their expression. J Exp Bot 2000, 51:1163-1166.
60. Waters D.L.E., Holton T.A., Ablett E.M., Lee L.S., Henry R.J. The ripening wine grape berry skin transcriptome. Plant Sci 2006, 171:132-138.
61. Pozueta-Romero J., Klein M., Houlné G., Schantz M.L., Meyer B., Schantz R. Characterization of a family of genes encoding a fruit-specific wound-stimulated protein of bell pepper (Capsicum annuum): identification of a new family of transposable elements. Plant Mol Biol 1995, 28:1011-1025.
62. Aggelis A., John I., Karvouni Z., Grierson D. Characterization of two cDNA clones for mRNAs expressed during ripening of melon (Cucumis melo L.) fruits. Plant Mol Biol 1997, 3:313-322.
63. Iusem N.D., Bartholomew D.M., Hitz W.D., Scolnik P.A. Tomato (Lycopersicon esculentum) transcript induced by water deficit and ripening. Plant Physiol 1993, 102:1353-1354.
64. Riccardi F., Gazeau P., de Vienne D., Zivy M. Protein changes in response to progressive water deficit in maize. Quantitative variation and polypeptide identification. Plant Physiol 1998, 117:1253-1263.
65. Golkari S., Gilbert J., Prashar S., Procunier J.D. Microarray analysis of Fusarium graminearum-induced wheat genes: identification of organ-specific and differentiallyexpressed genes. Plant Biotechnol J 2007, 5:38-49.
66. Kruger W.M., Pritsch C., Chao S., Muehlbauer G.J. Functional and comparative bioinformatic analysis of expressed genes from wheat spikes infected with Fusarium graminearum. Mol Plant Microbe Interact 2002, 15:445-455.
67. Di R, TumerNE. A truncated form of ribosomal protein l3 eliminates ribosome depurination and cell death caused by pokeweed antiviral protein and confers resistance to trichothecene mycotoxins. In: Proceedings of the 2nd International Symposium on Fusarium Head Blight Incorporating the 8th European Fusarium Seminar, Orlando, FL, 2004; 1:242.
68. Vierling E. The role of heat shock proteins in plants. Ann Rev Plant Physiol Plant Mol Biol 1991, 42:579-620.
69. Heckathorn S.A., Downs C.A., Sharkey T.D., Coleman J.S. The small, methionine-rich chloroplast heat-shock protein protects photosystem II electron transport during heat stress. Plant Physiol 1998, 116:439-444.
70. Jakob U., Gaestel M., Engel K., Buchner J. Small heat shock proteins are molecular chaperones. J Biol Chem 2009, 50:4734-4742.
71. Lee G.J., Pokala N., Vierling E. Structure and in vitro molecular chaperone activity of cytosolic small heat shock proteins from pea. J Biol Chem 1995, 270:10432-10438.
72. Waters E.R., Lee G.J., Vierling E. Evolution, structure and function of the small heat shock proteins in plants. J Exp Bot 1996, 47:325-338.
73. Hamilton E.W., Coleman J.S. Heat-shock proteins are induced in unstressed leaves of Nicotiana attenuate (Solanaceae) when distant leaves are stressed. Am J Bot 2001, 88:950-955.
74. Pirkkala L., Nykänen P., Sistonen L. Roles of the heat shock transcription factors in regulation of the heat shock response and beyond. FASEB J 2001, 15:1118-1131.
75. Showalter A.M., Bell J.N., Cramer C.L., Bailey J.A., Varner J.E., Lamb C.J. Accumulation of hydroxyproline-rich glycoprotein mRNAs in response to fungal elicitor and infection. Proc Natl Acad Sci USA 1985, 82:6551-6555.
76. Esquerré-Tugayé M.T., Mazaud D. Effect of a fungal disease on extension, the plant cell wall glycoprotein. J Exp Bot 1974, 3:509-513.
77. Davies T.G.E., Coleman J.O.D. The Arabidopsis thaliana ATP-binding cassette proteins: an emerging superfamily. Plant Cell Environ 2001, 23:431-443.
78. Hourton-Cabassa C., Ambard-Bretteville F., Moreau F., Davy de Virville J., Rémy R., Francs-Small C.C. Stress induction of mitochondrial formate dehydrogenase in potato leaves. Plant Physiol 1998, 116:627-635.
79. Prágai Z., Harwood C.R. YsxC, a putative GTP-binding protein essential for growth of Bacillus subtilis 168. J Bacteriol 2000, 182:6819-6823.
80. Eom E.M., Cho J.K., Lim S.O., Byun Y.J., Lee D.H. Molecular cloning and expression of a small GTP-binding protein of the Rop family from mung bean. Plant Sci 2006, 171:41-51.
81. Kawasaki T., Henmi K., Ono E., Hatakeyama S., Iwano M., Satoh H., et al. The small GTP-binding protein rac is a regulator of cell death in plants. Proc Natl Acad Sci USA 1999, 96:10922-10926.
82. Torres M.A., Jones J.D.G., Dangl J.L. Reactive oxygen species signaling in response to pathogens. Plant Physiol 2006, 141:373-378.