Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection

BMC Plant Biology

Volumn 7, Issue , 2007, Pages

  Hong, Lin ^a,d   Doddapaneni, Harshavardhan ^a,b,d   Takahashi, Yuri ^b,c   Walker, M Andrew ^b  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c Ehime Women's College   (Japan)

^d Equal Contributors ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NEGIBACTERIA; VITACEAE; VITIS; VITIS ARIZONICA; VITIS RUPESTRIS; XYLELLA FASTIDIOSA;

COMPLEMENTARY DNA;

CHEMISTRY; CLUSTER ANALYSIS; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PLANT; PLANT DISEASE; PLANT LEAF; PLANT STEM; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TIME; VITIS; XYLELLA;

CLUSTER ANALYSIS; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PLANT DISEASES; PLANT LEAVES; PLANT SHOOTS; PLANT STEMS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; TIME FACTORS; VITIS; XYLELLA;

EID: 33947220315     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-7-8     Document Type: Article

References (39)

1. Purcell AH, Hopkins DL: Fastidious xylem-limited bacterial plant pathogens. Annu Rev Phytopathol 1996, 34:131-51.
2. Krivanek AF, Walker MA: Vitis resistance to Pierce's disease is characterized by differential Xylella fastidiosa populations in stems and leaves. Phytopathology 2005, 95:44-52.
3. Mortensen JA: The inheritance of resistance to Pierce's disease in Vitis. J Am Soc Hortic Sci 1968, 92:331-337.
4. Walker MA, Tenscher A: Breeding Pierce's disease resistant winegrapes. Proceedings of the 2005 Pierce's Disease Research Symposium. San Diego, CA; 2005:77-80.
5. Krivanek AF, Famula TR, Tenscher A, Walker MA: Inheritance of resistance to Xylella fastidiosa within a Vitis rupestris × Vitis arizonica hybrid population. Theor Appl Genet 2005, 111:110-119.
6. Krivanek AF, Riaz S, Walker MA: Identification and molecular mapping of PdRI, a primary resistance gene to Pierce's disease in Vitis. Theor Appl Genet 2006, 112:1125-1131.
7. Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, Kerlavage AR, McCombie WR, Venter JC: Links Complementary DMA sequencing: expressed sequence tags and human genome project. Science 1991, 252:1651-1656.
8. Velculescu VE, Zhang L, Vogelstein B, Kinzler KW: Serial analysis of gene expression. Science 1995, 270:484-487.
9. Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, Johnson D, Luo S, McCurdy S, Foy M, Ewan M, Roth R, George D, Eletr S, Albrecht G, Vermaas E, Williams SR, Moon K, Burcham T, Pallas M, DuBridge RB, Kirchner J, Fearon K, Mao J-I, Corcoran K: Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Not Biotechnol 2000, 18:630-634.
10. Birch PRJ, Avrova AO, Lyon GD, Duncan JM, Toth RL: Isolation of potato genes that are induced during an early stage of the hypersensitive response to Phytophthora infestons. Mol Plant-Microbe interact 1999, 12:356-361.
11. Xiong L, Lee MW, Qi M, Yang Y: Identification of defense-related rice genes by suppression subtractive hybridization and differential screening. Mol Plant Microbe Interact 2001, 14:685-692.
12. Degenhardt J, Al-Masri AN, Kurkcuoglu S, Szankowski I, Gau AE: Characterization by suppression subtractive hybridization of transcripts that are differentially expressed in leaves of apple scab-resistant and susceptible cultivars of Malus domestica. Mol Genet Genomics 2005, 273:326-335.
13. Caturla M, Chaparro C, Schroeyers K, Holsters M: Suppression subtractive hybridization to enrich low-abundance and submergence-enhanced transcripts of adventitious root primordia of Sesbania rostrata. Plant Sci 2002, 162:915-921.
14. Moser C, Segala C, Fontana P, Salakhudtinov I, Gatto P, Pindo M, Zyprian E, Toepfer R, Grando MS, Velasco R: Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L. Funct Integr Genomics 2005, 5:208-17.
15. Goes da Silva F, Iandolino A, Al-Kayal F, Bohlmann MC, Cushman MA, Lim H, Ergul A, Figueroa R, Kabuloglu EK, Osborne C, Rowe J, Tattersall E, Leslie A, Xu J, Baek J, Cramer GR, Cushman JC, Cook DR: Characterizing the grape transcriptome. Analysis of expressed sequence tags from multiple Vitis species and development of a compendium of gene expression during berry development. Plant Physiol 2005, 139:574-597.
16. Pacey-Miller T, Scott K, Ablett E, Tingey S, Ching A, Henry R: Genes associated with the end of dormancy in grapes. Funct Integr Genornics 2003, 3:144-152.
17. Espinoza C, Vega A, Medina C, Schlauch K, Cramer G, Arce-Johnson P: Gene expression associated with compatible viral diseases in grapevine cultivars. Funct Integr Genomics 2006. DOI.10.1007/s10142-006-0031-6
18. Gomes E, Sagot E, Gaillard C, Laquitaine L, Poinssot B, Sanejouand YH, Delrot S, Coutos-Thevenot P: Nonspecific lipid-transfer protein genes expression in grape (Vitis sp.) cells in response to fungal elicitor treatments. Mol Plant Microbe Interact 2003, 16:456-464.
19. Hain R, Reif HJ, Krause E, Langebartels R, Kindl H, Vornam B, Wiese W, Schmelzer E, Schreier PH, Stocker RH, et al.: Disease resistance results from foreign phytoalexin expression in a novel plant. Nature 1993, 361:153-156.
20. Vitis Expression database [http://cropdisease.ars.usda.gov/ ~fruit_tree/]
21. Gachomo EW, Shonukan OO, Kotchoni SO: The molecular initiation and subsequent acquisition of disease resistance in plants. African J Biotechnol 2003, 2:26-32.
22. Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL: Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiol 2005, 138:105-115.
23. Fry SC, Smith RC, Renwick KF, Martin DJ, Hodge SK, Matthews KJ: Xyloglucan endotransglycosylase, a new wall-loosening enzyme activity from plants. Biochem J 1992, 282:821-828.
24. Nishitani K: Endo-xyloglucan transferase, a new class of transferase in cell wall construction. J Plant Res 1995, 108:137-148.
25. Xu W, Campbell P, Vargheese AK, Braam J: The Arabidopsis XET-related gene family: environmental and hormonal regulation of expression. Plant] 1996, 9:879-889.
26. Showalter AM: Structure and function of plant cell wall proteins. Plant Cell 1993, 5:9-23.
27. Bray EA: Genes commonly regulated by water-deficit stress in Arabidopsis thaliana. J Exp Bot 2004, 55:2332-2341.
28. Jacobs AK, Dry IB, Robinson SP: Induction of different pathogenesis-related cDNAs in grapevine infected with powdery mildew and treated with ethephon. Plant Pathol 1999, 48:325-336.
29. Kortekamp A: Expression analysis of defense-related genes in grapevine leaves after inoculation with a host and a non-host pathogen. Plant Physiol Biochem 2006, 44:58-67.
30. Caliskan M: Germin, an oxalate oxidase, has a function in many aspects of plant life. Turk J Biol 2000, 24:717-724.
31. Smalle J, Vierstra RD: The ubiquitin 26S proteasome proteolytic pathway. Annu Rev Plant Biol 2004, 55:555-590.
32. Mahalingam R, Gomez-Buitrago A, Eckardt N, Shah N, Guevara-Garcia A, Day P, Raina R, Fedoroff NV: Characterizing the stress/ defense transcriptome of Arabidopsis. Genome Biol 2003, 4:R20.
33. Rairdan GJ, Donofrio NM, Delaney TP: Salicylic acid and NIMI/ NPRI-independent gene induction by incompatible Peronospora parasitica in arabidopsis. Molec Plant Microbe Interact 2001, 14:1235-1246.
34. Otovis L Jr: Antibacterial peptides isolated from insects. J Pept Sci 2000, 6:497-511.
35. Davis MJ, French WJ, Schaad NW: Axenic culture of the bacteria associated with phony disease of peach and plum leaf scald. Curr Microbiol 1981, 6:309-314.
36. Lewinsohn E, Steele CL, Croteau R: Simple isolation of functional RNA from woody stems of gymnosperms. Plant Mol Bio Rep 1994, 12:20-25.
37. Wang SX, Hunter W, Plant A: Isolation and purification of functional total RNA from woody branches and needles of sitka and white spruce. Bio Techniq 2000, 28:292-296.
38. Link to High Throughput - Gene Ontology -Functional Annotation (HT-GO-FAT) site [http://199.133.147.108/ht-gofat.htm]
39. Gene Ontology website [http://www.geneontology.org/GO. downloads.shtml]