Microarray analysis of Fusarium graminearum-induced wheat genes: Identification of organ-specific and differentially expressed genes

Plant Biotechnology Journal

Volumn 5, Issue 1, 2007, Pages 38-49

  Golkari, Saber ^a   Gilbert, Jeannie ^a   Prashar, Suvira ^a   Procunier, J Douglas ^a  

^a Cereal Research Centre   (Canada)

Author keywords

Anther; Expressed sequence tag microarray; Fusarium head blight; Glumes; Lemmas; Ovary; Palea; Rachis; Wheat

Indexed keywords

COMPLEMENTARY DNA;

ARTICLE; DNA MICROARRAY; EXPRESSED SEQUENCE TAG; FUSARIUM; GENE EXPRESSION REGULATION; GENETICS; OXIDATIVE STRESS; RESPIRATORY BURST; WHEAT;

DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; FUSARIUM; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, PLANT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OXIDATIVE STRESS; RESPIRATORY BURST; TRITICUM;

FUNGI; FUSARIUM; GIBBERELLA ZEAE; PALEA; TRITICUM AESTIVUM;

EID: 33845793939     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/j.1467-7652.2006.00213.x     Document Type: Article

References (44)

1. Atienza, S.G., Faccioli, P., Perrotta, G., Dalfino, G., Zschiesche, W., Humbeck, K., Stanca, A.M. and Cattivelli, L. (2004) Large scale analysis of transcript abundance in barley subjected to several single and combined abiotic stress conditions. Plant Sci. 167, 1359-1365.
2. Baldwin, D., Crane, V. and Rice, D. (1999) A comparison of gel-based, nylon filter and microarray techniques to detect differential RNA expression in plants. Curr. Opin. Plant Biol. 2, 96-103.
3. Brandt, S.P. (2005) Microgenomics: gene expression analysis at the tissue-specific and single-cell levels. J. Exp. Bot. 56, 495-505.
4. Buerstmayr, H., Lemmens, M., Fedak, G., Ruckenbauer, P. and Gill, C.B.S. (1999) Back-cross reciprocal monosomic analysis of Fusarium head blight resistance in wheat (Triticum aestivum L.). Theor. Appl. Genet. 98, 76-85.
5. Caldo, R.A., Nettleton, D. and Wise, R.P. (2004) Interaction-dependent gene expression in mla-specified response to barley powdery mildew. Plant Cell, 16, 2514-2528.
6. Collinge, D.B., Kragh, K.M., Mikkelsen, J.D., Nielsen, K.K., Rasmussen, U. and Vad, K. (1993) Plant chitinases. Plant J. 3, 31-40.
7. Di, R. and Tumer. N.E. (2004) A truncated form of ribosomal protein I3 eliminates ribosome depurination and cell death caused by pokeweed antiviral protein and confers resistance to trichothecene mycotoxins. In: Proceedings of the 2nd International Symposium on Fusarium Head Blight Incorporating the 8th European Fusarium Seminar, Wyndham Orlando Resort, Orlando, FL, USA, 11-15 December, Vol. 1, p. 242. East Lansing: Michigan State University.
8. Dixon, R.A. and Paiva, N.L. (1995) Stress-induced phenylpropanoid metabolism. Plant Cell, 7, 1085-1097.
9. Dushnicky, L.G., Ballance, G.M., Sumner, M.J. and MacGregor, A.W. (1998) The role of lignification as a resistance mechanism in wheat to a toxin-producing isolate of Pyrenophora tritici-repentis. Can. J. Plant Pathol. 20, 35-47.
10. van Eeuwijk, E.A., Mesterházy, A., Kling, C.I., Ruckenbauer, P., Saur, L., Bürstmayr, H., Lemmens, M., Keizer, L.C.P., Maurin, N. and Snijders, C.H.A. (1995) Assessing non-specificity of resistance in wheat to head blight caused by inoculation with European strains of Fusarium culmorum, F. graminearum and F. nivale using a multiplicative model for interaction. Theor. Appl. Genet. 90, 221-228.
11. Eulgem, T., Rushton, P.J., Robatzek, S. and Somssich, I.E. (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5, 199-206.
12. Fedak, G., Gilbert, J., Armstrong, K.C., Procunier, J.D., Tinker, N., Butler, G. and Pandeya, R. (1998) Studies of inheritance of Fusarium head blight in wheat. In: Proceedings of the National Fusarium Head Blight Forum, Michigan State University, East Lansing, MI, USA, 26-27 October, pp. 25-27. East Lansing: Michigan State University.
13. Gilbert, J. and Tekauz, A. (2000) Review: Recent developments in research on FHB of wheat in Canada. Can. J. Plant Pathol. 22, 1-8.
14. Hall, M.D. and Van Sanford, D.A. (2003) Diallele analysis of Fusarium head blight resistance in soft red winter wheat. Crop Sci. 43, 1663-1670.
15. Hart, L.P., Catal, M. and Wang, Z. (2005) Microarray analysis of Fusarium head blight toxin deoxynivalenol (DON) regulated genes of Arabidopsis thaliana. In: Proceedings of the National Fusarium Head Blight Forum, Hilton Milwaukee City Center, Milwaukee, WI, USA, 11-13 December, pp. 36-40. East Lansing: Michigan State University.
16. Huang, X. and Madan, A. (1999) CAP3: a DNA sequence assembly program. Genome Res. 9, 868-877.
17. Jahoor, A., Eriksen, L. and Backes, G. (2004) QTLs and genes for disease resistance in barley and wheat. In: Cereal Genomics (Gupta, P.K. and Varshney, R.K., eds), pp. 199-251. Dordrecht: Kluwer Academic.
18. Kang, Z. and Buchenauer, H. (2000) Ultrastructural and immunocytochemical investigation of pathogen development and host responses in resistant and susceptible wheat spikes infected by Fusarium culmorum. Physiol. Mol. Plant Pathol. 57, 255-268.
19. 2-generating system. Plant Physiol. 120, 1175-1182.
20. Kawasaki, S., Borchert, C., Deyholos, M., Wang, H., Brazille, S., Kawai, K., Galbraith, D. and Bohnert, H.J. (2001) Gene expression profiles during the initial phase of salt stress in rice. Plant Cell, 13, 889-906.
21. Kloosterman, B., Vorst, O., Hall, R.D., Visser, R.G.F. and Bachem., C.W. (2005) Tuber on a chip: differential gene expression during potato tuber development. Plant Biotechnol. J. 3, 505-519.
22. Kruger, W.M., Pritsch, C., Chao, S. and Muehlbauer, G.J. (2002) Functional and comparative bioinformatic analysis of expressed genes from wheat spikes infected with Fusarium graminearum. Mol. Plant-Microbe Interact. 5, 445-455.
23. Lee, J.-M., Williams, M., Tingey, S. and Rafalski, A. (2002) DNA array profiling of gene expression changes during maize embryo development. Func. Integrative Genomics, 2, 13-27.
24. Lu, R., Malcuit, I., Moffett, P., Ruiz, M.T., Peart, J., Wu, A.J., Rathjen, J.P., Bendahmane, A., Day, L. and Baulcombe, D.C. (2003) High throughput virus-induced gene silencing implicates heat shock protein 90 in plant disease resistance. EMBO J. 22, 5690-5699.
25. Ma, L., Sun, N., Liu, X., Jiao, Y., Zhao, H. and Deng, X.W. (2005) Organ-specific expression of Arabidopsis genome during development. Plant Physiol. 138, 80-91.
26. Mayer, A.M. and Harel, E. (1979) Polyphenol oxidase in plants. Phytochemistry, 18, 193-215.
27. Meyers, B.C., Dickerman, A.W., Michelmore, R.W., Sivaramakrishnan, S., Sobral, B.W. and Young, N.D. (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 20, 317-332.
28. Miller, S.S., Chabot, D.M.P., Ouellet, T., Harris, L.J. and Fedak, G. (2004) Use of a Fusarium graminearum strain transformed with green fluorescent protein to study infection in wheat (Triticum aestivum). Can. J. Plant Pathol. 26, 453-463.
29. Mittler, R. (2002) Oxidative stress, antioxidants and stress tolerance. Trends Plant Sci. 7, 405-410.
30. van Montfort, R.L.M., Slingsby, C. and Vierling, E. (2002) Structure and function of the small heat shock protein/α-crystallin family of molecular chaperones. In Protein Folding in the Cell (Horwich, A.L., ed.), pp. 105-156. New York: Academic Press.
31. Narusaka, Y., Narusaka, M., Seki, M., Ishida, J., Nakashima, M., Kamiya, A., Enju, A., Sakurai, T., Satoh, M., Kobayashi, M., Tosa, Y., Park, P. and Shinozaki, K. (2003) The cDNA microarray analysis using an Arabidopsis pad3 mutant reveals the expression profiles and classification of genes induced by Alternaria brassicicola attack. Plant Cell Physiol. 44, 377-387.
32. Poppenberger, B., Berthiller, F., Lucyshyn, D., Sieberer, T., Schuhmacher, R., Krska, R., Kuchler, K., Glossl, J., Luschnig, C. and Adam, G. (2003) Detoxification of the Fusarium mycotoxin deoxynivalenol by a UDP-glucosyltransferase from Arabidopsis thaliana. J. Biol. Chem. 278, 47 905-47 914.
33. Pritsch, C., Muehlbauer, G.J., Bushnell, W.R., Somers, D.A. and Vance, C.P. (2000) Fungal development and induction of defense response genes during early infection of wheat spikes by Fusarium graminearum. Mol. Plant-Microbe Interact. 13, 159-169.
34. Procunier, J.D., Gilbert, J., Townley-Smith, F., Armstrong, K. and Fedak, G. (2000) Markers for Fusarium head blight disease resistance. U.S. Patent No. 6197518, filed June, 1999.
35. Pryor, W.A. (1997) Oxidative stress and defense mechanisms in plants: general introduction. Free Radic. Biol. Med. 23, 470.
36. Ro, D.K. and Douglas, C.J. (2004) Reconstitution of the entry point of plant phenylpropanoid metabolism in yeast (Saccharomyces cerevisiae): implications for control of metabolic flux into the phenylpropanoid pathway. J. Biol. Chem. 279, 2600-2607.
37. Ruepp, A., Zollner, A., Maier, D., Albermann, K., Hani, J., Mokrejs, M., Tetko, I., Guldener, U., Mannhaupt, G., Munsterkotter, M. and Mewes, H.W. (2004) The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res. 32, 5539-5545.
38. Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
39. Shim, K.S., Cho, S.K., Jeung, J.U., Jung, K.W., You, M.K., Ok, S.H., Chung, Y.S., Kang, K.H., Hwang, H.G., Choi, H.C., Moon, H.P. and Shin, J.S. (2004) Identification of fungal (Magnaporthe grisea) stress-induced genes in wild rice (Oryza minuta). Plant Cell Rep. 22, 599-607.
40. Tusher, V.G., Tibshirani, R. and Chu, G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA, 98, 5116-5121.
41. Vigers, A.J., Wiedemann, S., Roberts, W.K., Legrand, M., Selitrennikoff, C.P. and Fritig, B. (1992) Thaumatin-like pathogenesis related proteins are antifungal. Plant Sci. 83, 155-161.
42. Wang, W., Vinocur, B., Shoseyov, O. and Altman, A. (2004) Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci. 9, 244-252.
43. Yang, Y.H. and Speed, T. (2003) Design and analysis of comparative microarray experiments. In: Statistical Analysis of Gene Expression Microarray Data (Speed, T., ed.), pp. 35-91. Washington, DC: Chapman & Hall/CRC.
44. Zhou, W., Kolb, F.L. and Riechers, D.E. (2005) Identification of proteins induced or upregulated by Fusarium head blight infection in the spikes of hexaploid wheat (Triticum aestivum). Genome, 48, 770-780.