Real-time imaging of the HIV-1 transcription cycle in single living cells

Methods

Volumn 53, Issue 1, 2011, Pages 62-67

  Maiuri, Paolo ^a   Knezevich, Anna ^a   Bertrand, Edouard ^b   Marcello, Alessandro ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

^b INSTITUT DE GÉNÉTIQUE MOLÉCULAIRE DE MONTPELLIER   (France)

Author keywords

Dynamic; Fluorescence; FRAP; HIV 1; Imaging; Kinetic; Photobleaching; RNAPII; Tat; Transcription

Indexed keywords

FLUORESCENT DYE; TRANSCRIPTION FACTOR; VIRUS RNA;

BIOGENESIS; CHROMATIN ASSEMBLY AND DISASSEMBLY; FLUORESCENCE; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; HOST CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REVIEW; VIRUS TRANSCRIPTION;

FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; FLUORESCENT DYES; GREEN FLUORESCENT PROTEINS; HIV-1; HUMANS; RECOMBINANT FUSION PROTEINS; RECOMBINANT PROTEINS; RNA, VIRAL; SINGLE-CELL ANALYSIS; TRANSCRIPTION, GENETIC;

HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 78651496192     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2010.06.015     Document Type: Review

References (69)

1. Greene W.C., Peterlin B.M. Nat. Med. 2002, 8:673-680.
2. Hetzer C., Dormeyer W., Schnolzer M., Ott M. Microbes Infect. 2005, 7:1364-1369.
3. Marcello A., Zoppe M., Giacca M. IUBMB Life 2001, 51:175-181.
4. Malim M.H., Cullen B.R. Mol. Cell. Biol. 1993, 13:6180-6189.
5. Marcello A. Retrovirology 2006, 3:7.
6. Massari S., Daelemans D., Barreca M.L., Knezevich A., Sabatini S., Cecchetti V., Marcello A., Pannecouque C., Tabarrini O. J. Med. Chem. 2010, 53:641-648.
7. Fusco D., Accornero N., Lavoie B., Shenoy S.M., Blanchard J.M., Singer R.H., Bertrand E. Curr. Biol. 2003, 13:161-167.
8. Janicki S.M., Tsukamoto T., Salghetti S.E., Tansey W.P., Sachidanandam R., Prasanth K.V., Ried T., Shav-Tal Y., Bertrand E., Singer R.H., Spector D.L. Cell 2004, 116:683-698.
9. Shav-Tal Y., Darzacq X., Shenoy S.M., Fusco D., Janicki S.M., Spector D.L., Singer R.H. Science 2004, 304:1797-1800.
10. Hager G.L., McNally J.G., Misteli T. Mol. Cell 2009, 35:741-753.
11. De Marco A., Dans P.D., Knezevich A., Maiuri P., Pantano S., Marcello A. Amino Acids 2010, 38(5):1583-1593.
12. Shav-Tal Y., Darzacq X., Singer R.H. EMBO J. 2006, 25:3469-3479.
13. Tsien R.Y. Annu. Rev. Biochem. 1998, 67:509-544.
14. Marcello A., Cinelli R.A., Ferrari A., Signorelli A., Tyagi M., Pellegrini V., Beltram F., Giacca M. J. Biol. Chem. 2001, 276:39220-39225.
15. Marcello A., Dhir S., Dieudonné M. Nucleus 2010, 1(1):8-11.
16. Belmont A.S., Li G., Sudlow G., Robinett C. Methods Cell Biol. 1999, 58:203-222.
17. Robinett C.C., Straight A., Li G., Willhelm C., Sudlow G., Murray A., Belmont A.S. J. Cell Biol. 1996, 135:1685-1700.
18. Tumbar T., Sudlow G., Belmont A.S. J. Cell Biol. 1999, 145:1341-1354.
19. Tsukamoto T., Hashiguchi N., Janicki S.M., Tumbar T., Belmont A.S., Spector D.L. Nat. Cell Biol. 2000, 2:871-878.
20. Fraefel C., Bittermann A.G., Bueler H., Heid I., Bachi T., Ackermann M. J. Virol. 2004, 78:389-398.
21. Sourvinos G., Everett R.D. EMBO J. 2002, 21:4989-4997.
22. Boulon S., Basyuk E., Blanchard J.M., Bertrand E., Verheggen C. Biochimie 2002, 84:805-813.
23. Politz J.C., Tuft R.A., Prasanth K.V., Baudendistel N., Fogarty K.E., Lifshitz L.M., Langowski J., Spector D.L., Pederson T. Mol. Biol. Cell 2006, 17:1239-1249.
24. Ainger K., Avossa D., Morgan F., Hill S.J., Barry C., Barbarese E., Carson J.H. J. Cell. Biol. 1993, 123:431-441.
25. Tyagi S., Kramer F.R. Nat. Biotechnol. 1996, 14:303-308.
26. Tyagi S. Nat. Methods 2009, 6:331-338.
27. Bertrand E., Chartrand P., Schaefer M., Shenoy S.M., Singer R.H., Long R.M. Mol. Cell 1998, 2:437-445.
28. Querido E., Chartrand P. Methods Cell Biol. 2008, 85:273-292.
29. Darzacq X., Yao J., Larson D.R., Causse S.Z., Bosanac L., de Turris V., Ruda V.M., Lionnet T., Zenklusen D., Guglielmi B., Tjian R., Singer R.H. Annu. Rev. Biophys. 2009, 38:173-196.
30. Daigle N., Ellenberg J. Nat. Methods 2007, 4:633-636.
31. Lange S., Katayama Y., Schmid M., Burkacky O., Brauchle C., Lamb D.C., Jansen R.P. Traffic 2008, 9:1256-1267.
32. Kerppola T.K. Nat. Protoc. 2006, 1:1278-1286.
33. Rackham O., Brown C.M. EMBO J. 2004, 23:3346-3355.
34. Valencia-Burton M., McCullough R.M., Cantor C.R., Broude N.E. Nat. Methods 2007, 4:421-427.
35. Ozawa T., Natori Y., Sato M., Umezawa Y. Nat. Methods 2007, 4:413-419.
36. Hoenninger V.M., Rouha H., Orlinger K.K., Miorin L., Marcello A., Kofler R.M., Mandl C.W. Virology 2008, 377:419-430.
37. Miorin L., Maiuri P., Hoenninger V.M., Mandl C.W., Marcello A. Virology 2008, 379:64-77.
38. Chubb J.R., Trcek T., Shenoy S.M., Singer R.H. Curr. Biol. 2006, 16:1018-1025.
39. Jaramillo A.M., Weil T.T., Goodhouse J., Gavis E.R., Schupbach T. J. Cell Sci. 2008, 121:887-894.
40. Boireau S., Maiuri P., Basyuk E., de la Mata M., Knezevich A., Pradet-Balade B., Backer V., Kornblihtt A., Marcello A., Bertrand E. J. Cell Biol. 2007, 179:291-304.
41. Beckham C.J., Light H.R., Nissan T.A., Ahlquist P., Parker R., Noueiry A. J. Virol. 2007, 81:9759-9768.
42. Jouvenet N., Simon S.M., Bieniasz P.D. Proc. Natl. Acad. Sci. USA 2009, 106:19114-19119.
43. Molle D., Segura-Morales C., Camus G., Berlioz-Torrent C., Kjems J., Basyuk E., Bertrand E. J. Biol. Chem. 2009, 284:19727-19743.
44. Camus G., Segura-Morales C., Molle D., Lopez-Verges S., Begon-Pescia C., Cazevieille C., Schu P., Bertrand E., Berlioz-Torrent C., Basyuk E. Mol. Biol. Cell 2007, 18:3193-3203.
45. De Marco A., Biancotto C., Knezevich A., Maiuri P., Vardabasso C., Marcello A. Retrovirology 2008, 5:98.
46. Dieudonne M., Maiuri P., Biancotto C., Knezevich A., Kula A., Lusic M., Marcello A. EMBO J. 2009, 28:2231-2243.
47. Beaudouin J., Mora-Bermudez F., Klee T., Daigle N., Ellenberg J. Biophys. J. 2006, 90:1878-1894.
48. Axelrod D., Koppel D.E., Schlessinger J., Elson E., Webb W.W. Biophys. J. 1976, 16:1055-1069.
49. McNally J.G. Methods Cell Biol. 2008, 85:329-351.
50. Sprague B.L., McNally J.G. Trends Cell Biol. 2005, 15:84-91.
51. Lippincott-Schwartz J., Altan-Bonnet N., Patterson G.H. Nat. Cell Biol. 2003, (Suppl.):S7-S14.
52. Dundr M., Misteli T. Curr. Protoc. Cell Biol. 2003, 5. (Chapter 13, Unit 13).
53. Patterson G.H., Lippincott-Schwartz J. Methods 2004, 32:445-450.
54. Braga J., McNally J.G., Carmo-Fonseca M. Biophys. J. 2007, 92:2694-2703.
55. Sprague B.L., Muller F., Pego R.L., Bungay P.M., Stavreva D.A., McNally J.G. Biophys. J. 2006, 91:1169-1191.
56. Sprague B.L., Pego R.L., Stavreva D.A., McNally J.G. Biophys. J. 2004, 86:3473-3495.
57. Carrero G., Crawford E., Hendzel M.J., de Vries G. Bull. Math. Biol. 2004, 66:1515-1545.
58. Carrero G., McDonald D., Crawford E., de Vries G., Hendzel M.J. Methods 2003, 29:14-28.
59. Dundr M., Hoffmann-Rohrer U., Hu Q., Grummt I., Rothblum L.I., Phair R.D., Misteli T. Science 2002, 298:1623-1626.
60. Presley J.F., Ward T.H., Pfeifer A.C., Siggia E.D., Phair R.D., Lippincott-Schwartz J. Nature 2002, 417:187-193.
61. Phair R.D., Gorski S.A., Misteli T. Methods Enzymol. 2004, 375:393-414.
62. Gorski S.A., Snyder S.K., John S., Grummt I., Misteli T. Mol. Cell 2008, 30:486-497.
63. Darzacq X., Shav-Tal Y., de Turris V., Brody Y., Shenoy S.M., Phair R.D., Singer R.H. Nat. Struct. Mol. Biol. 2007, 14:796-806.
64. de la Mata M., Alonso C.R., Kadener S., Fededa J.P., Blaustein M., Pelisch F., Cramer P., Bentley D., Kornblihtt A.R. Mol. Cell 2003, 12:525-532.
65. Ardehali M.B., Lis J.T. Nat. Struct. Mol. Biol. 2009, 16:1123-1124.
66. Molle D., Maiuri P., Boireau S., Bertrand E., Knezevich A., Marcello A., Basyuk E. Retrovirology 2007, 4:36.
67. Michelman-Ribeiro A., Mazza D., Rosales T., Stasevich T.J., Boukari H., Rishi V., Vinson C., Knutson J.R., McNally J.G. Biophys. J. 2009, 97:337-346.
68. Sage D., Neumann F.R., Hediger F., Gasser S.M., Unser M. IEEE Trans. Image Process. 2005, 14:1372-1383.
69. Phair R.D., Misteli T. Nature 2000, 404:604-609.