Intra-nuclear RNA trafficking: Insights from live cell imaging

Biochimie

Volumn 84, Issue 8, 2002, Pages 805-813

  Boulon, Séverine ^a   Basyuk, Eugenia ^a   Blanchard, Jean Marie ^a   Bertrand, Edouard ^a   Verheggen, Céline ^a  

^a INSTITUT DE GÉNÉTIQUE MOLÉCULAIRE DE MONTPELLIER   (France)

Author keywords

Cajal bodies; Live cell imaging; Nuclear structure; RNA trafficking; snoRNA

Indexed keywords

FLUORESCENT DYE; HYBRID PROTEIN; NUCLEAR RNA; OLIGONUCLEOTIDE; POLYADENYLATED RNA; RNA; RNA BINDING PROTEIN; SMALL NUCLEOLAR RIBONUCLEOPROTEIN; SMALL NUCLEOLAR RNA;

ARTICLE; BLEACHING; CELL; CELL COMPARTMENTALIZATION; CELL NUCLEUS; DATA BASE; DIFFUSION; FLUORESCENCE SPECTROSCOPY; IMAGING; MICROINJECTION; MICROSCOPY; MODEL; MOLECULE; OLIGONUCLEOTIDE PROBE; RNA SEQUENCE; RNA TRANSPORT; TECHNOLOGY; CHEMISTRY; FLUORESCENCE MICROSCOPY; HELA CELL; HUMAN; IMAGE PROCESSING; METABOLISM; METHODOLOGY; REPORTER GENE; REVIEW; SPECTROFLUOROMETRY; SYNTHESIS;

CELL NUCLEUS; FLUORESCENT DYES; GENES, REPORTER; HELA CELLS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY, FLUORESCENCE; PHOTOBLEACHING; RECOMBINANT FUSION PROTEINS; RNA; RNA-BINDING PROTEINS; SPECTROMETRY, FLUORESCENCE;

EID: 0036703018     PISSN: 03009084     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0300-9084(02)01438-4     Document Type: Article

References (45)

1. E. Bertrand, P. Chartrand, M. Schaefer, S. Shenoy, R. Singer, R. Long, Localization of ASH1 mRNA particles in living yeast, Mol. Cell 2 (1998) 437-445.
2. M. Kloc, N. Zearfoss, L. Etkin, Mechanisms of subcellular mRNA localization, Cell 108 (2002) 533-544.
3. J. Politz, R. Tuft, T. Pederson, R. Singer, Movement of nuclear poly(A) RNA throughout the interchromatin space in living cells, Curr. Biol. 9 (1999) 285-291.
4. J. Politz, E. Browne, D. Wolf, T. Pederson, Intra-nuclear diffusion and hybridization state of oligonucleotides measured by fluorescence correlation spectroscopy in living cells, Proc. Natl. Acad. Sci. USA 95 (1998) 6043-6048.
5. J. Wang, L. Cao, Y. Wang, T. Pederson, Localization of pre-messenger RNA at discrete nuclear sites, Proc. Natl. Acad. Sci. USA 88 (1991) 7391-7395.
6. K. Ainger, D. Avossa, F. Morgan, S. Hill, C. Barry, E. Barbarese, J. Carson, Transport and localization of exogenous myelin basic protein mRNA microinjected into oligodendrocytes, J. Cell Biol. 123 (1993) 431-441.
7. D. Ferrandon, L. Elphick, C. Nusslein-Volhard, D. St Johnston, Staufen protein associates with the 3'UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner, Cell 79 (1994) 1221-1232.
8. G. Wilkie, I. Davis, Drosophila wingless and pair-rule transcripts localize apically by dynein-mediated transport of RNA particles, Cell 105 (2001) 209-219.
9. J. Politz, K. Taneja, R. Singer, Characterization of hybridization between synthetic oligodeoxynucleotides and RNA in living cells, Nucleic Acids Res. 23 (1995) 4946-4953.
10. C. Robinett, A. Straight, G. Li, C. Willhelm, G. Sudlow, A. Murray, A. Belmont, In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition, J. Cell Biol. 135 (1996) 1685-1700.
11. D. Fusco, N. Accornero, B. Lavoie, S. Shenoy, J. Blanchard, R. Singer, E. Bertrand, Sequence dependent movement of single mRNA molecules in the cytoplasm of living mammalian cells, submitted for publication (2002).
12. D. Axelrod, D.E. Koppel, J. Schlessinger, E. Elson, W.W. Webb, Mobility measurement by analysis of fluorescent photobleaching recovery kinetics, Biophys. J. 16 (1976) 1055-1069.
13. R.D. Phair, T. Misteli, High mobility of proteins in the mammalian cell nucleus, Nature 404 (2000) 604-609.
14. R.B. Knowles, J.H. Sabry, M.E. Martone, T.J. Deerinck, M.H. Ellisman, G.J. Bassell, K.S. Kosik, Translocation of RNA granules in living neurons, J. Neurosci. 16 (1996) 7812-7820.
15. T. Misteli, A. Gunjan, R. Hock, M. Bustin, D. Brown, Dynamic binding of histone H1 to chromatin in living cells, Nature 408 (2000) 877-881.
16. S. Huang, T. Deerinck, M. Ellisman, D. Spector, The perinucleolar compartment and transcription, J. Cell Biol. 143 (1998) 35-47.
17. D. Chen, S. Huang, Nucleolar components involved in ribosome biogenesis cycle between the nucleolus and nucleoplasm in interphase cells, J. Cell Biol. 153 (2001) 169-176.
18. M. Muratani, D. Gerlich, S. Janicki, M. Gebhard, R. Eils, D. Spector, Metabolic-energy-dependent movement of PML bodies within the mammalian cell nucleus, Nature Cell Biol. 4 (2002) 106.
19. K. Boudonck, L. Dolan, P.J. Shaw, The movement of coiled bodies visualized in living plant cells by the green fluorescent protein, Mol. Biol. Cell. 10 (1999) 2297-2307.
20. M. Platani, I. Goldberg, J. Swedlow, A. Lamond, In vivo analysis of Cajal body movement, separation, and joining in live human cells, J. Cell Biol. 151 (2000) 1561-1574.
21. T. Misteli, J.F. Caceres, D.L. Spector, The dynamics of a pre-mRNA splicing factor in living cells, Nature 387 (1997) 523-527.
22. R. Eils, D. Gerlich, W. Tvarusko, D. Spector, T. Misteli, Quantitative imaging of pre-mRNA splicing factors in living cells, Mol. Biol. Cell 11 (2000) 413-418.
23. X. Darzacq, B.E. Jády, C. Verheggen, A.M. Kiss, E. Bertrand, T. Kiss, Cajal body-specific small nuclear RNAs: a novel class of 2′-O-methylation and pseudouridylation guide RNAs, EMBO J. 21 (2002) 2746-2756.
24. J. Gall, Cajal bodies: the first 100 years, Annu. Rev. Cell Dev. Biol. 16 (2000) 273-300.
25. C. Verheggen, D.J.L. Lafontaine, D. Samarsky, J. Blanchard, R. Bordonné, E. Bertrand, Mammalian and yeast U3 snoRNPs are matured in specific and related nuclear compartments, EMBO J. 21 (2002) 2736-2745.
26. A. Narayanan, W. Speckmann, R. Terns, M. Terns, Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli, Mol. Biol. Cell 10 (1999) 2131-2147.
27. J. Sleeman, A. Lamond, Newly assembled snRNPs associate with coiled bodies before speckles, suggesting a nuclear snRNP maturation pathway, Curr. Biol. 9 (1999) 1065-1074.
28. S. Ramon y Cajal, Un sencillo metodo de coloracion selectiva del reticulo protoplasmatico y sus efectos en los diversos organos nervioso de vertebrados e invertebrados, Trab. Lab. Invest. Biol. (Madrid) 2 (1903) 129-221.
29. P. Salomoni, P. Pandolfi, The role of PML in tumor suppression, Cell 108 (2002) 165-170.
30. J.D. Aitchison, M.P. Rout, A tense time for the nuclear envelope, Cell (2002) 301-304.
31. M.O. Olson, M. Dundr, A. Szebeni, The nucleolus: an old factory with unexpected capabilities, Trends Cell Biol. 10 (2000) 189-196.
32. D. Hernandez-Verdun, T. Gautier, The chromosome periphery during mitosis, Bioessays 16 (1994) 179-185.
33. L.F. Jimenez-Garcia, M.L. Segura-Valdez, R.L. Ochs, L.I. Rothblum, R. Hannan, D. Spector, Nucleologenesis: U3 snRNA-containing pre-nucleolar bodies move to sites of active pre-rRNA transcription after mitosis, Mol. Biol. Cell 5 (1994) 955-966.
34. M. Dundr, T. Misteli, O. Mo, The dynamics of postmitotic reassembly of the nucleolus, J. Cell Biol. 150 (2000) 433-446.
35. T. Savino, J. Gebrane-Younes, J. De Mey, J. Sibarita, D. Hernandez-Verdun, Nucleolar assembly of the rRNA processing machinery in living cells, J. Cell Biol. 153 (2001) 1097-1110.
36. P. Ganot, B. Jady, M. Bortolin, X. Darzacq, T. Kiss, Nucleolar factors direct the 2′-O-ribose methylation and pseudouridylation of U6 spliceosomal RNA, Mol. Cell Biol. 19 (1999) 6906-6917.
37. D. Samarsky, M. Fournier, R. Singer, E. Bertrand, The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization, EMBO J. 17 (1998) 3747-3757.
38. E. Bertrand, F. Houser-Scott, A. Kendall, R. Singer, D. Engelke, Nucleolar localization of early tRNA processing, Genes Dev. 12 (1998) 2463-2468.
39. G. Zhang, K. Taneja, R. Singer, M. Green, Localization of pre-mRNA splicing in mammalian nuclei, Nature 372 (1994) 809-812.
40. M. Frey, A. Bailey, A. Weiner, A.G. Matera, Association of snRNA genes with coiled bodies is mediated by nascent snRNA transcripts, Curr. Biol. 9 (1999) 126-135.
41. L. Gao, M. Frey, A.G. Matera, Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure, Nucleic Acids Res. 25 (1997) 4740-4747.
42. W. Schul, B. Adelaar, R. Van Driel, L. De Jong, Coiled bodies are predisposed to a spatial association with genes that contain snoRNA sequences in their introns, J. Cell Biochem. 75 (1999) 393-403.
43. S. Huang, T.J. Deerinck, M.H. Ellisman, D.L. Spector, In vivo analysis of the stability and transport of nuclear poly(A)+ RNA, J. Cell Biol. 126 (1994) 877-899.
44. Z. Zachar, J. Kramer, I. Mims, P. Bingham, Evidence for channelled diffusion of pre-mRNAs during nuclear RNA transport in metazoans, J. Cell Biol. 121 (1993) 729-742.
45. S. Huang, D. Spector, Intron-dependent recruitment of pre-mRNA splicing factors to sites of transcription, J. Cell Biol. 133 (1996) 719-732.