FRAP analysis of binding: Proper and fitting

Trends in Cell Biology

Volumn 15, Issue 2, 2005, Pages 84-91

  Sprague, Brian L ^a   McNally, James G ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING AFFINITY; CELL FUNCTION; DIFFUSION; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVIEW;

DIFFUSION; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; GREEN FLUORESCENT PROTEINS; MODELS, MOLECULAR; PROTEIN BINDING;

EID: 13244291467     PISSN: 09628924     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tcb.2004.12.001     Document Type: Review

References (65)

1. A.S. Verkman Solute and macromolecule diffusion in cellular aqueous compartments Trends Biochem. Sci. 27 2002 27 33
2. M. Weiss, and T. Nilsson In a mirror dimly: tracing the movements of molecules in living cells Trends Cell Biol. 14 2004 267 272
3. E.L. Elson Fluorescence correlation spectroscopy measures molecular transport in cells Traffic 2 2001 789 796
4. S.A. Kim, and P. Schwille Intracellular applications of fluorescence correlation spectroscopy: prospects for neuroscience Curr. Opin. Neurobiol. 13 2003 583 590
5. R.D. Icenogle, and E.L. Elson Fluorescence correlation spectroscopy and photobleaching recovery of multiple binding reactions. I. Theory and FCS measurements Biopolymers 22 1983 1919 1948
6. E. Haustein, and P. Schwille Ultrasensitive investigations of biological systems by fluorescence correlation spectroscopy Methods 29 2003 153 166
7. J. Lippincott-Schwartz Photobleaching and photoactivation: following protein dynamics in living cells Nat. Cell Biol. 5 Suppl. 2003 S7 S14
8. T. Pederson Protein mobility within the nucleus - what are the right moves? Cell 104 2001 635 638
9. E.A. Reits, and J.J. Neefjes From fixed to FRAP: measuring protein mobility and activity in living cells Nat. Cell Biol. 3 2001 E145 E147
10. T. Misteli Protein dynamics: implications for nuclear architecture and gene expression Science 291 2001 843 847
11. J.C. Politz Intranuclear diffusion and hybridization state of oligonucleotides measured by fluorescence correlation spectroscopy in living cells Proc. Natl. Acad. Sci. U. S. A. 95 1998 6043 6048
12. M. Wachsmuth Analyzing intracellular binding and diffusion with continuous fluorescence photobleaching Biophys. J. 84 2003 3353 3363
13. Edidin, M. (1994) Fluorescence photobleaching and recovery, FPR, in the analysis of membrane structure and dynamics. In Mobility and Proximity in Biological Membranes, pp. 109-135, CRC Press
14. M.J. Saxton Lateral diffusion of lipids and proteins Curr. Top. Membr. 48 1999 229 282
15. M. Wachsmuth Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy J. Mol. Biol. 298 2000 677 689
16. M. Arrio-Dupont Translational diffusion of globular proteins in the cytoplasm of cultured muscle cells Biophys. J. 78 2000 901 907
17. O. Seksek Translational diffusion of macromolecule-sized solutes in cytoplasm J. Cell Biol. 138 1997 131 142
18. R.D. Phair Measurement of dynamic protein binding to chromatin in vivo, using photobleaching microscopy Methods Enzymol. 375 2004 393 414
19. B.L. Sprague Analysis of binding reactions by fluorescence recovery after photobleaching Biophys. J. 86 2004 3473 3495
20. R.D. Phair Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins Mol. Cell. Biol. 24 2004 6393 6402
21. N. Belgareh An evolutionarily conserved NPC subcomplex, which redistributes in part to kinetochores in mammalian cells J. Cell Biol. 154 2001 1147 1160
22. J.C. Bulinski Rapid dynamics of the microtubule binding of ensconsin in vivo J. Cell Sci. 114 2001 3885 3897
23. S. Yumura Myosin II dynamics and cortical flow during contractile ring formation in Dictyostelium cells J. Cell Biol. 154 2001 137 146
24. H. Kimura, and P.R. Cook Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B J. Cell Biol. 153 2001 1341 1353
25. J.N. Molk The differential roles of budding yeast Tem1p, Cdc15p, and Bub2p protein dynamics in mitotic exit Mol. Biol. Cell 15 2004 1519 1532
26. J. Presley Dissection of COPI and Arf1 dynamics in vivo and role in Golgi membrane transport Nature 417 2002 187 193
27. M. Dundr A kinetic framework for a mammalian RNA polymerase in vivo Science 298 2002 1623 1626
28. B.M. Slepchenko Quantitative cell biology with the Virtual Cell Trends Cell Biol. 13 2003 570 576
29. Crank, J. (1975) Diffusion and chemical reaction. In The Mathematics of Diffusion, pp. 326-351, Oxford University Press, New York
30. E.L. Elson, and J.A. Reidler Analysis of cell surface interactions by measurements of lateral mobility J. Supramol. Struct. 12 1979 481 489
31. E.N. Kaufman, and R.K. Jain Quantification of transport and binding parameters using fluorescence recovery after photobleaching. Potential for in vivo applications Biophys. J. 58 1990 873 885
32. G. Carrero Quantification of protein-protein and protein-DNA interactions in vivo, using fluorescence recovery after photobleaching Methods Enzymol. 375 2004 415 442
33. G. Carrero Using FRAP and mathematical modeling to determine the in vivo kinetics of nuclear proteins Methods 29 2003 14 28
34. P. Farla The androgen receptor ligand-binding domain stabilizes DNA binding in living cells J. Struct. Biol. 147 2004 50 61
35. H. Kimura The transcription cycle of RNA polymerase II in living cells J. Cell Biol. 159 2002 777 782
36. D.M. Soumpasis Theoretical analysis of fluorescence photobleaching recovery experiments Biophys. J. 41 1983 95 97
37. P.G. Saffman, and M. Delbruck Brownian motion in biological membranes Proc. Natl. Acad. Sci. U. S. A. 72 1975 3111 3113
38. D. Axelrod Mobility measurement by analysis of fluorescence photobleaching recovery kinetics Biophys. J. 16 1976 1055 1069
39. D.E. Koppel Dynamics of fluorescence marker concentration as a probe of mobility Biophys. J. 16 1976 1315 1329
40. D.A. Stavreva, and J.G. McNally Fluorescence recovery after photobleaching (FRAP) methods for visualizing protein dynamics in living mammalian cell nuclei Methods Enzymol. 375 2004 443 455
41. H. Kimura Measuring histone and polymerase dynamics in living cells Methods Enzymol. 375 2004 381 393
42. P.A. Liebman, and G. Entine Lateral diffusion of visual pigment in photoreceptor disk membranes Science 185 1974 457 459
43. M. Poo, and R.A. Cone Lateral diffusion of rhodopsin in the photoreceptor membrane Nature 247 1974 438 441
44. A.B. Houtsmuller Action of DNA repair endonuclease ERCC1/XPF in living cells Science 284 1999 958 961
45. A.B. Houtsmuller, and W. Vermeulen Macromolecular dynamics in living cell nuclei revealed by fluorescence redistribution after photobleaching Histochem. Cell Biol. 115 2001 13 21
46. J. White, and E. Stelzer Photobleaching GFP reveals protein dynamics inside live cells Trends Cell Biol. 9 1999 61 65
47. R. Festenstein Modulation of heterochromatin protein 1 dynamics in primary mammalian cells Science 299 2003 719 721
48. Y. Shav-Tal Dynamics of single mRNPs in nuclei of living cells Science 304 2004 1797 1800
49. M. Elsner Spatiotemporal dynamics of the COPI vesicle machinery EMBO Rep. 4 2003 1000 1004
50. B. Giese Long term association of the cytokine receptor gp130 and the Janus kinase Jak1 revealed by FRAP analysis J. Biol. Chem. 278 2003 39205 39213
51. S.L. Shaw Sustained microtubule treadmilling in Arabidopsis cortical arrays Science 300 2003 1715 1718
52. A.J. Smith Microtubule-dependent transport of secretory vesicles in RBL-2H3 cells Traffic 4 2003 302 312
53. G. von Wichert Force-dependent integrin-cytoskeleton linkage formation requires downregulation of focal complex dynamics by Shp2 EMBO J. 22 2003 5023 5035
54. B.J. Howell Spindle checkpoint protein dynamics at kinetochores in living cells Curr. Biol. 14 2004 953 964
55. D. Magde Thermodynamic fluctuations in a reacting system: measurement by fluorescence correlation spectroscopy Phys. Rev. Lett. 29 1972 705 708
56. E.L. Elson, and D. Magde Fluorescence correlation spectroscopy. I. Conceptual basis and theory Biopolymers 13 1974 1 27
57. E.L. Elson Fluorescence correlation spectroscopy and photobleaching recovery Annu. Rev. Phys. Chem. 36 1985 379 406
58. J. Ellenberg Nuclear membrane dynamics and reassembly in living cells: targeting of an inner nuclear membrane protein in interphase and mitosis J. Cell Biol. 138 1997 1193 1206
59. C-L. Wey Lateral diffusion of rhodopsin in photoreceptor cells measured by fluorescence photobleaching and recovery Biophys. J. 33 1981 225 232
60. K. Braeckmans Three-dimensional fluorescence recovery after photobleaching with the confocal scanning laser microscope Biophys. J. 85 2003 2240 2252
61. U. Kubitscheck Three-dimensional diffusion measurements by scanning microphotolysis J. Microsc. 192 1998 126 138
62. M.J. Saxton Anomalous diffusion due to bleaching: a Monte Carlo study Biophys. J. 70 1996 1250 1262
63. N. Sciaky Golgi tubule traffic and the effects of brefeldin A visualized in living cells J. Cell Biol. 139 1997 1137 1155
64. E.D. Siggia Diffusion in inhomogeneous media: theory and simulations applied to whole cell photobleach recovery Biophys. J. 79 2000 1761 1770
65. B.P. Olveczky, and A.S. Verkman Monte Carlo analysis of obstructed diffusion in three dimensions: application to molecular diffusion in organelles Biophys. J. 74 1998 2722 2730