Characterizing fluorescence recovery curves for nuclear proteins undergoing binding events

Bulletin of Mathematical Biology

Volumn 66, Issue 6, 2004, Pages 1515-1545

  Carrero, G ^a   Crawford, E ^a   Hendzel, M J ^a   De Vries, G ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 7444240826     PISSN: 00928240     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bulm.2004.02.005     Document Type: Article

References (30)

1. Axelrod D., Koppel D.E., Schlessinger J., Elson E., Webb W.W. Mobility measurement by analysis of fluorescence photobleaching recovery kinetics. Biophys. J. 16:1976;1055-1069
2. Bender C.M., Orszag S.A. Advanced Mathematical Methods for Scientists and Engineers. 1978;McGraw-Hill, New York
3. Berg H.C. Random Walks in Biology. 1993;Princeton University Press, New Jersey
4. Bomprezzi R., Kovanen P., Martin R. New approaches to investigating heterogeneity in complex traits. J. Med. Genet. 40:2003;553-559
5. Carrero G., Crawford E., Th'ng J., de Vries G., Hendzel M.J. Quantification of protein-protein and protein-DNA interactions in vivo using fluorescence recovery after photobleaching. Methods Enzymol. 375:2004;415-442
6. Carrero G., McDonald D., Crawford E., de Vries G., Hendzel M.J. Using FRAP and mathematical modeling to determine the in vivo kinetics of nuclear proteins. Methods. 29:2003;14-28
7. Crank J. The Mathematics of Diffusion. 1975;Oxford University Press
8. Doi M., Edwards S.F. The Theory of Polymer Dynamics. 1986;Oxford University Press, New York
9. Dundr M., Hoffmann-Rohrer U., Hu Q., Grummt I., Rothblum L., Phair R., Misteli T. A kinetic framework for a mammalian RNA polymerase in vivo. Science. 298:2002;1623-1626
10. Dundr M., Misteli T. Functional architecture in the cell nucleus. Biochem. J. 356:2001;297-310
11. Eils R., Athale C. Computational imaging in cell biology. J. Cell Biol. 161:2003;477-481
12. Hardt S.L. Aspects of diffusional transport in microorganisms. Caplan S., Ginzburg M. Energetics and Structure of Halophilic Microorganisms. 1978;591-597 Elsevier, Amsterdam
13. Hardt S.L. The diffusion transit time: a simple derivation. Bull. Math. Biol. 150:1978;591-597
14. Hendzel M.J., Kruhlak M.J., MacLean N.A., Boisvert F., Lever M.A., Bazett-Jones D.P. Compartmentalization of regulatory proteins in the cell nucleus. J. Steroid Biochem. Mol. Biol. 76:2001;9-21
15. Hendzel M., Lever M., Crawford E., Th'ng J. The C-terminal domain is the primary determinant of histone H1 binding to chromatin in vivo. J. Biol. Chem. 2004;. (in press). (doi:10.1074/jbc.M400070200)
16. Howard J. Mechanics of Motor Proteins and the Cytoskeleton. 2001;Sinauer Associates. Inc, Massachusetts
17. Kruhlak M.J., Lever M.A., Fischle W., Verdin E., Bazzett-Jones D.P., Hendzel M.J. Reduced mobility of the alternate splicing factor (ASF) through the nucleoplasm and steady-state speckle compartments. J. Cell Biol. 150:2000;41-52
18. Lever M.A., Th'ng J.P., Sung X., Hendzel M.J. Rapid exchange of histone H1.1 on chromatin in living human cells. Nature. 408:2000;873-876
19. McDonald, D., G. Carrero, E. Crawford, C. Andrin, G. de Vries and M.J. Hendzel (2004). Nuclear beta actin exists in a dynamic equilibrium between filaments and monomers in mammalian cells (in preparation)
20. McGrath J., Tardy Y., Dewey C., Meister J., Hartwig J. Simultaneous measurements of actin filament turnover, filament fraction, and monomer diffusion in endothelial cells. Biophys. J. 75:1998;2070-2078
21. Misteli T. Protein dynamics: implications for nuclear architecture and gene expression. Science. 291:2001;843-847
22. Misteli T., Gunjan A., Hock R., Bustin M., Brown D.T. Dynamic binding of histone H1 to chromatin in living cells. Nature. 408:2000;877-881
23. Myers R.H. Classical and Modern Regression with Applications. 1986;Duxbury Press, Boston
24. Parada L., Roix J., Misteli T. An uncertainty principle in chromosome positioning. Trends Cell Biol. 13:2003;393-396
25. Phair R.D., Misteli T. High mobility of proteins in the cell nucleus. Nature. 404:2000;604-609
26. Phair R.D., Misteli T. Kinetic modelling approaches to in vivo imaging. Nat. Rev. Mol. Cell Biol. 2:2001;898-907
27. -9 meters. Genome Biol. 3:2002;. REPORTS4007
28. Ronen M., Rosenberg R., Shraiman B., Alon U. Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. Proc. Natl. Acad. Sci. USA. 99:2002;10555-10560
29. Stenoien D.L., Patel K., Mancini M.G., Dutertre M., Smith C.L., O'Malley B.W., Mancini M.A. FRAP reveals that mobility of oestrogen receptor- α is ligand- and proteasome-dependent. Nat. Cell. Biol. 3:2001;15-23
30. Tardy Y., McGrath J., Hartwig J., Dewey C. Interpreting photoactivated fluorescence microscopy measurements of steady-state actin dynamics. Biophys. J. 69:1995;1674-1682