-
1
-
-
67249138142
-
Pandemic potential of a strain of influenza A (H1N1): Early findings
-
10.1126/science.1176062. 19433588
-
Pandemic potential of a strain of influenza A (H1N1): early findings. C Fraser CA Donnelly S Cauchemez WP Hanage MD Van Kerkhove TD Hollingsworth J Griffin RF Baggaley HE Jenkins EJ Lyons T Jombart WR Hinsley NC Grassly F Balloux AC Ghani NM Ferguson A Rambaut OG Pybus H Lopez-Gatell CM Alpuche-Aranda IB Chapela EP Zavala DME Guevara F Checchi E Garcia S Hugonnet C Roth WHO Rapid Pandemic Assessment Collaboration, Science 2009 324 5934 1557 61 10.1126/science.1176062 19433588
-
(2009)
Science
, vol.324
, Issue.5934
, pp. 1557-61
-
-
Fraser, C.1
Donnelly, C.A.2
Cauchemez, S.3
Hanage, W.P.4
Van Kerkhove, M.D.5
Hollingsworth, T.D.6
Griffin, J.7
Baggaley, R.F.8
Jenkins, H.E.9
Lyons, E.J.10
Jombart, T.11
Hinsley, W.R.12
Grassly, N.C.13
Balloux, F.14
Ghani, A.C.15
Ferguson, N.M.16
Rambaut, A.17
Pybus, O.G.18
Lopez-Gatell, H.19
Alpuche-Aranda, C.M.20
Chapela, I.B.21
Zavala, E.P.22
Guevara, D.M.E.23
Checchi, F.24
Garcia, E.25
Hugonnet, S.26
Roth, C.27
more..
-
2
-
-
67649297821
-
Emergence and pandemic potential of swine-origin H1N1 influenza virus
-
10.1038/nature08157. 19525932
-
Emergence and pandemic potential of swine-origin H1N1 influenza virus. G Neumann T Noda Y Kawaoka, Nature 2009 459 7249 931 9 10.1038/nature08157 19525932
-
(2009)
Nature
, vol.459
, Issue.7249
, pp. 931-9
-
-
Neumann, G.1
Noda, T.2
Kawaoka, Y.3
-
3
-
-
0035658084
-
A novel influenza A virus mitochondrial protein that induces cell death
-
10.1038/nm1201-1306. 11726970
-
A novel influenza A virus mitochondrial protein that induces cell death. W Chen PA Calvo D Malide J Gibbs U Schubert I Bacik S Basta R O'Neill J Schickli P Palese P Henklein JR Bennink JW Yewdell, Nat Med 2001 7 12 1306 12 10.1038/nm1201-1306 11726970
-
(2001)
Nat Med
, vol.7
, Issue.12
, pp. 1306-12
-
-
Chen, W.1
Calvo, P.A.2
Malide, D.3
Gibbs, J.4
Schubert, U.5
Bacik, I.6
Basta, S.7
O'Neill, R.8
Schickli, J.9
Palese, P.10
Henklein, P.11
Bennink, J.R.12
Yewdell, J.W.13
-
4
-
-
67749133883
-
A complicated message: Identification of a novel PB1-related protein translated from influenza A virus segment 2 mRNA
-
10.1128/JVI.00826-09. 19494001
-
A complicated message: Identification of a novel PB1-related protein translated from influenza A virus segment 2 mRNA. HM Wise A Foeglein J Sun RM Dalton S Patel W Howard EC Anderson WS Barclay P Digard, J Virol 2009 83 16 8021 31 10.1128/JVI.00826-09 19494001
-
(2009)
J Virol
, vol.83
, Issue.16
, pp. 8021-31
-
-
Wise, H.M.1
Foeglein, A.2
Sun, J.3
Dalton, R.M.4
Patel, S.5
Howard, W.6
Anderson, E.C.7
Barclay, W.S.8
Digard, P.9
-
5
-
-
33847044691
-
The evolution of epidemic influenza
-
10.1038/nrg2053. 17262054
-
The evolution of epidemic influenza. MI Nelson EC Holmes, Nat Rev Genet 2007 8 3 196 205 10.1038/nrg2053 17262054
-
(2007)
Nat Rev Genet
, vol.8
, Issue.3
, pp. 196-205
-
-
Nelson, M.I.1
Holmes, E.C.2
-
6
-
-
0030987210
-
Initial genetic characterization of the 1918 "spanish" influenza virus
-
10.1126/science.275.5307.1793. 9065404
-
Initial genetic characterization of the 1918 "Spanish" influenza virus. JK Taubenberger AH Reid AE Krafft KE Bijwaard TG Fanning, Science 1997 275 5307 1793 6 10.1126/science.275.5307.1793 9065404
-
(1997)
Science
, vol.275
, Issue.5307
, pp. 1793-6
-
-
Taubenberger, J.K.1
Reid, A.H.2
Krafft, A.E.3
Bijwaard, K.E.4
Fanning, T.G.5
-
7
-
-
0033574005
-
Origin and evolution of the 1918 "spanish" influenza virus hemagglutinin gene
-
10.1073/pnas.96.4.1651. 9990079
-
Origin and evolution of the 1918 "Spanish" influenza virus hemagglutinin gene. AH Reid TG Fanning JV Hultin JK Taubenberger, Proc Natl Acad Sci USA 1999 96 4 1651 6 10.1073/pnas.96.4.1651 9990079
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.4
, pp. 1651-6
-
-
Reid, A.H.1
Fanning, T.G.2
Hultin, J.V.3
Taubenberger, J.K.4
-
8
-
-
70349266019
-
Detection of mammalian virulence determinants in highly pathogenic avian influenza H5N1 viruses: Multivariate analysis of published data
-
10.1128/JVI.00608-09. 19625397
-
Detection of mammalian virulence determinants in highly pathogenic avian influenza H5N1 viruses: multivariate analysis of published data. SJ Lycett MJ Ward FI Lewis AFY Poon SL Kosakovsky Pond AJL Brown, J Virol 2009 83 19 9901 10 10.1128/JVI.00608-09 19625397
-
(2009)
J Virol
, vol.83
, Issue.19
, pp. 9901-10
-
-
Lycett, S.J.1
Ward, M.J.2
Lewis, F.I.3
Poon, A.F.Y.4
Kosakovsky Pond, S.L.5
Brown, A.J.L.6
-
9
-
-
62549148694
-
Human HA and polymerase subunit PB2 proteins confer transmission of an avian influenza virus through the air
-
10.1073/pnas.0813172106. 19211790
-
Human HA and polymerase subunit PB2 proteins confer transmission of an avian influenza virus through the air. N Van Hoeven C Pappas JA Belser TR Maines H Zeng A García-Sastre R Sasisekharan JM Katz TM Tumpey, Proc Natl Acad Sci USA 2009 106 9 3366 71 10.1073/pnas.0813172106 19211790
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.9
, pp. 3366-71
-
-
Van Hoeven, N.1
Pappas, C.2
Belser, J.A.3
Maines, T.R.4
Zeng, H.5
García-Sastre, A.6
Sasisekharan, R.7
Katz, J.M.8
Tumpey, T.M.9
-
10
-
-
77951165843
-
Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus
-
10.1126/science.1186430. 20339031
-
Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus. R Xu DC Ekiert JC Krause R Hai JE Crowe Jr IA Wilson, Science 2010 328 5976 357 60 10.1126/science.1186430 20339031
-
(2010)
Science
, vol.328
, Issue.5976
, pp. 357-60
-
-
Xu, R.1
Ekiert, D.C.2
Krause, J.C.3
Hai, R.4
Crowe Jr., J.E.5
Wilson, I.A.6
-
11
-
-
67649538978
-
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic
-
10.1038/nature08182. 19516283
-
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. GJD Smith D Vijaykrishna J Bahl SJ Lycett M Worobey OG Pybus SK Ma CL Cheung J Raghwani S Bhatt JSM Peiris Y Guan A Rambaut, Nature 2009 459 7250 1122 5 10.1038/nature08182 19516283
-
(2009)
Nature
, vol.459
, Issue.7250
, pp. 1122-5
-
-
Smith, G.J.D.1
Vijaykrishna, D.2
Bahl, J.3
Lycett, S.J.4
Worobey, M.5
Pybus, O.G.6
Ma, S.K.7
Cheung, C.L.8
Raghwani, J.9
Bhatt, S.10
Peiris, J.S.M.11
Guan, Y.12
Rambaut, A.13
-
12
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
10.1186/1471-2148-7-214. 17996036
-
BEAST: Bayesian evolutionary analysis by sampling trees. AJ Drummond A Rambaut, BMC Evol Biol 2007 7 214 10.1186/1471-2148-7-214 17996036
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
13
-
-
0036005520
-
Inferring the root of a phylogenetic tree
-
10.1080/106351502753475862. 11943091
-
Inferring the root of a phylogenetic tree. JP Huelsenbeck JP Bollback AM Levine, Syst Biol 2002 51 32 43 10.1080/106351502753475862 11943091
-
(2002)
Syst Biol
, vol.51
, pp. 32-43
-
-
Huelsenbeck, J.P.1
Bollback, J.P.2
Levine, A.M.3
-
14
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
10.1093/bioinformatics/14.9.817. 9918953
-
MODELTEST: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 9 817 8 10.1093/bioinformatics/14.9.817 9918953
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 817-8
-
-
Posada, D.1
Crandall, K.A.2
-
15
-
-
77954337309
-
Viral phylodynamics and the search for an 'effective number of infections'
-
10.1098/rstb.2010.0060. 20478883
-
Viral phylodynamics and the search for an 'effective number of infections'. SDW Frost EM Volz, Philos Trans R Soc Lond B Biol Sci 2010 365 1548 1879 90 10.1098/rstb.2010.0060 20478883
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, Issue.1548
, pp. 1879-90
-
-
Frost, S.D.W.1
Volz, E.M.2
-
16
-
-
44449164435
-
The genomic and epidemiological dynamics of human influenza A virus
-
10.1038/nature06945. 18418375
-
The genomic and epidemiological dynamics of human influenza A virus. A Rambaut OG Pybus MI Nelson C Viboud JK Taubenberger EC Holmes, Nature 2008 453 7195 615 9 10.1038/nature06945 18418375
-
(2008)
Nature
, vol.453
, Issue.7195
, pp. 615-9
-
-
Rambaut, A.1
Pybus, O.G.2
Nelson, M.I.3
Viboud, C.4
Taubenberger, J.K.5
Holmes, E.C.6
-
17
-
-
75849136881
-
Adaptive strategies of the influenza virus polymerase for replication in humans
-
10.1073/pnas.0911915106. 19995968
-
Adaptive strategies of the influenza virus polymerase for replication in humans. A Mehle JA Doudna, Proc Natl Acad Sci USA 2009 106 50 21312 6 10.1073/pnas.0911915106 19995968
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.50
, pp. 21312-6
-
-
Mehle, A.1
Doudna, J.A.2
-
19
-
-
76749122795
-
Hitchhiking and the population genetic structure of avian influenza virus
-
10.1007/s00239-009-9312-8. 20041240
-
Hitchhiking and the population genetic structure of avian influenza virus. R Chen EC Holmes, J Mol Evol 2010 70 98 105 10.1007/s00239-009-9312-8 20041240
-
(2010)
J Mol Evol
, vol.70
, pp. 98-105
-
-
Chen, R.1
Holmes, E.C.2
-
20
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
7968486
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences. N Goldman Z Yang, Mol Biol Evol 1994 11 5 725 36 7968486
-
(1994)
Mol Biol Evol
, vol.11
, Issue.5
, pp. 725-36
-
-
Goldman, N.1
Yang, Z.2
-
21
-
-
58149168840
-
The population genetics of dN/dS
-
10.1371/journal.pgen.1000304. 19081788
-
The population genetics of dN/dS. S Kryazhimskiy JB Plotkin, PLoS Genet 2008 4 12 1000304 10.1371/journal.pgen.1000304 19081788
-
(2008)
PLoS Genet
, vol.4
, Issue.12
, pp. 51000304
-
-
Kryazhimskiy, S.1
Plotkin, J.B.2
-
22
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
10.1038/351652a0. 1904993
-
Adaptive protein evolution at the Adh locus in Drosophila. JH McDonald M Kreitman, Nature 1991 351 6328 652 4 10.1038/351652a0 1904993
-
(1991)
Nature
, vol.351
, Issue.6328
, pp. 652-4
-
-
McDonald, J.H.1
Kreitman, M.2
-
23
-
-
77951093707
-
Detecting natural selection in RNA virus populations using sequence summary statistics
-
10.1016/j.meegid.2009.06.001. 19524068
-
Detecting natural selection in RNA virus populations using sequence summary statistics. S Bhatt A Katzourakis OG Pybus, Infect Genet Evol 2010 10 3 421 30 10.1016/j.meegid.2009.06.001 19524068
-
(2010)
Infect Genet Evol
, vol.10
, Issue.3
, pp. 421-30
-
-
Bhatt, S.1
Katzourakis, A.2
Pybus, O.G.3
-
25
-
-
0029099781
-
Properties of statistical tests of neutrality for DNA polymorphism data
-
8536987
-
Properties of statistical tests of neutrality for DNA polymorphism data. KL Simonsen GA Churchill CF Aquadro, Genetics 1995 141 413 29 8536987
-
(1995)
Genetics
, vol.141
, pp. 413-29
-
-
Simonsen, K.L.1
Churchill, G.A.2
Aquadro, C.F.3
-
26
-
-
33645981586
-
Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus
-
10.1126/science.1124513. 16543414
-
Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus. J Stevens O Blixt TM Tumpey JK Taubenberger JC Paulson IA Wilson, Science 2006 312 5772 404 10 10.1126/science.1124513 16543414
-
(2006)
Science
, vol.312
, Issue.5772
, pp. 404-10
-
-
Stevens, J.1
Blixt, O.2
Tumpey, T.M.3
Taubenberger, J.K.4
Paulson, J.C.5
Wilson, I.A.6
-
27
-
-
55249083577
-
Structural characterization of the 1918 influenza virus H1N1 neuraminidase
-
10.1128/JVI.00959-08. 18715929
-
Structural characterization of the 1918 influenza virus H1N1 neuraminidase. X Xu X Zhu RA Dwek J Stevens IA Wilson, J Virol 2008 82 21 10493 501 10.1128/JVI.00959-08 18715929
-
(2008)
J Virol
, vol.82
, Issue.21
, pp. 10493-501
-
-
Xu, X.1
Zhu, X.2
Dwek, R.A.3
Stevens, J.4
Wilson, I.A.5
-
28
-
-
0028774037
-
The structure of a complex between the NC10 antibody and influenza virus neuraminidase and comparison with the overlapping binding site of the NC41 antibody
-
10.1016/S0969-2126(00)00074-5. 7994573
-
The structure of a complex between the NC10 antibody and influenza virus neuraminidase and comparison with the overlapping binding site of the NC41 antibody. RL Malby WR Tulip VR Harley JL McKimm-Breschkin WG Laver RG Webster PM Colman, Structure 1994 2 8 733 46 10.1016/S0969-2126(00)00074-5 7994573
-
(1994)
Structure
, vol.2
, Issue.8
, pp. 733-46
-
-
Malby, R.L.1
Tulip, W.R.2
Harley, V.R.3
McKimm-Breschkin, J.L.4
Laver, W.G.5
Webster, R.G.6
Colman, P.M.7
-
29
-
-
16344378246
-
Bayes empirical Bayes inference of amino acid sites under positive selection
-
10.1093/molbev/msi097. 15689528
-
Bayes empirical Bayes inference of amino acid sites under positive selection. Z Yang WSW Wong R Nielsen, Mol Biol Evol 2005 22 4 1107 18 10.1093/molbev/msi097 15689528
-
(2005)
Mol Biol Evol
, vol.22
, Issue.4
, pp. 1107-18
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
-
30
-
-
77957233773
-
The effect of insertions, deletions and alignment errors on the branch-site test of positive selection
-
20447933
-
The effect of insertions, deletions and alignment errors on the branch-site test of positive selection. W Fletcher Z Yang, Mol Biol Evol 2010 20447933
-
(2010)
Mol Biol Evol
-
-
Fletcher, W.1
Yang, Z.2
-
31
-
-
61449229355
-
Protein structure homology modeling using SWISS-MODEL workspace
-
10.1038/nprot.2008.197. 19131951
-
Protein structure homology modeling using SWISS-MODEL workspace. L Bordoli F Kiefer K Arnold P Benkert J Battey T Schwede, Nat Protoc 2009 4 1 13 10.1038/nprot.2008.197 19131951
-
(2009)
Nat Protoc
, vol.4
, pp. 1-13
-
-
Bordoli, L.1
Kiefer, F.2
Arnold, K.3
Benkert, P.4
Battey, J.5
Schwede, T.6
-
32
-
-
33748437791
-
The structure of H5N1 avian influenza neuraminidase suggests new opportunities for drug design
-
10.1038/nature05114. 16915235
-
The structure of H5N1 avian influenza neuraminidase suggests new opportunities for drug design. RJ Russell LF Haire DJ Stevens PJ Collins YP Lin GM Blackburn AJ Hay SJ Gamblin JJ Skehel, Nature 2006 443 7107 45 9 10.1038/nature05114 16915235
-
(2006)
Nature
, vol.443
, Issue.7107
, pp. 45-9
-
-
Russell, R.J.1
Haire, L.F.2
Stevens, D.J.3
Collins, P.J.4
Lin, Y.P.5
Blackburn, G.M.6
Hay, A.J.7
Gamblin, S.J.8
Skehel, J.J.9
-
33
-
-
67749114646
-
Mapping the sequence mutations of the 2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding sites
-
discussion 18. 10.1186/1745-6150-4-18. 19457254
-
Mapping the sequence mutations of the 2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding sites. S Maurer-Stroh J Ma RTC Lee FL Sirota F Eisenhaber, Biol Direct 2009 4 18 discussion 18 10.1186/1745-6150-4-18 19457254
-
(2009)
Biol Direct
, vol.4
, pp. 18
-
-
Maurer-Stroh, S.1
Ma, J.2
Lee, R.T.C.3
Sirota, F.L.4
Eisenhaber, F.5
-
34
-
-
0034809334
-
Statistical tests of selective neutrality in the age of genomics
-
10.1046/j.1365-2540.2001.00895.x. 11595044
-
Statistical tests of selective neutrality in the age of genomics. R Nielsen, Heredity 2001 86 Pt 6 641 7 10.1046/j.1365-2540.2001.00895.x 11595044
-
(2001)
Heredity
, vol.86
, Issue.PART 6
, pp. 641-7
-
-
Nielsen, R.1
-
35
-
-
0042354654
-
Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA
-
10.1093/molbev/msg147. 12777508
-
Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA. R Nielsen Z Yang, Mol Biol Evol 2003 20 8 1231 9 10.1093/molbev/msg147 12777508
-
(2003)
Mol Biol Evol
, vol.20
, Issue.8
, pp. 1231-9
-
-
Nielsen, R.1
Yang, Z.2
-
36
-
-
39749161509
-
Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage
-
10.1093/molbev/msm284. 18178545
-
Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage. Z Yang R Nielsen, Mol Biol Evol 2008 25 3 568 79 10.1093/molbev/msm284 18178545
-
(2008)
Mol Biol Evol
, vol.25
, Issue.3
, pp. 568-79
-
-
Yang, Z.1
Nielsen, R.2
-
37
-
-
77949536563
-
Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles
-
10.1073/pnas.0910915107. 20176949
-
Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles. N Rodrigue H Philippe N Lartillot, Proc Natl Acad Sci USA 2010 107 10 4629 34 10.1073/pnas.0910915107 20176949
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.10
, pp. 4629-34
-
-
Rodrigue, N.1
Philippe, H.2
Lartillot, N.3
-
38
-
-
77956600587
-
Synthesizing within-host and population-level selective pressures on viral populations: The impact of adaptive immunity on viral immune escape
-
20335194
-
Synthesizing within-host and population-level selective pressures on viral populations: the impact of adaptive immunity on viral immune escape. I Volkov KM Pepin JO Lloyd-Smith JR Banavar BT Grenfell, J R Soc Interface 2010 20335194
-
(2010)
J R Soc Interface
-
-
Volkov, I.1
Pepin, K.M.2
Lloyd-Smith, J.O.3
Banavar, J.R.4
Grenfell, B.T.5
-
39
-
-
33846007284
-
Stochastic processes are key determinants of short-term evolution in influenza A virus
-
10.1371/journal.ppat.0020125. 17140286
-
Stochastic processes are key determinants of short-term evolution in influenza A virus. MI Nelson L Simonsen C Viboud MA Miller J Taylor KS George SB Griesemer E Ghedin E Ghedi NA Sengamalay DJ Spiro I Volkov BT Grenfell DJ Lipman JK Taubenberger EC Holmes, PLoS Pathog 2006 2 12 125 10.1371/journal. ppat.0020125 17140286
-
(2006)
PLoS Pathog
, vol.2
, Issue.12
, pp. 5125
-
-
Nelson, M.I.1
Simonsen, L.2
Viboud, C.3
Miller, M.A.4
Taylor, J.5
George, K.S.6
Griesemer, S.B.7
Ghedin, E.8
Ghedi, E.9
Sengamalay, N.A.10
Spiro, D.J.11
Volkov, I.12
Grenfell, B.T.13
Lipman, D.J.14
Taubenberger, J.K.15
Holmes, E.C.16
-
40
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340. 15034147
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput. RC Edgar, Nucleic Acids Res 2004 32 5 1792 7 10.1093/nar/gkh340 15034147
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-7
-
-
Edgar, R.C.1
-
41
-
-
33747847779
-
PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
-
WEB SERVER 10.1093/nar/gkl315. 16845082
-
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. M Suyama D Torrents P Bork, Nucleic Acids Res 2006 34 Web Server 609 12 10.1093/nar/gkl315 16845082
-
(2006)
Nucleic Acids Res
, Issue.34
, pp. 23609-12
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
43
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
10.1128/AEM.71.3.1501-1506.2005. 15746353
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. PD Schloss J Handelsman, Appl Environ Microbiol 2005 71 3 1501 6 10.1128/AEM.71.3.1501-1506.2005 15746353
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.3
, pp. 1501-6
-
-
Schloss, P.D.1
Handelsman, J.2
-
44
-
-
33344465800
-
Relaxed phylogenetics and dating with confidence
-
10.1371/journal.pbio.0040088. 16683862
-
Relaxed phylogenetics and dating with confidence. AJ Drummond SYW Ho MJ Phillips A Rambaut, PLoS Biol 2006 4 5 88 10.1371/journal.pbio.0040088 16683862
-
(2006)
PLoS Biol
, vol.4
, Issue.5
, pp. 588
-
-
Drummond, A.J.1
Ho, S.Y.W.2
Phillips, M.J.3
Rambaut, A.4
-
45
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
10.1093/molbev/msi103. 15703244
-
Bayesian coalescent inference of past population dynamics from molecular sequences. AJ Drummond A Rambaut B Shapiro OG Pybus, Mol Biol Evol 2005 22 5 1185 92 10.1093/molbev/msi103 15703244
-
(2005)
Mol Biol Evol
, vol.22
, Issue.5
, pp. 1185-92
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
46
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
10.1093/molbev/msi237. 16107592
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. J Zhang R Nielsen Z Yang, Mol Biol Evol 2005 22 12 2472 9 10.1093/molbev/msi237 16107592
-
(2005)
Mol Biol Evol
, vol.22
, Issue.12
, pp. 2472-9
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
-
47
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
12032247
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Z Yang R Nielsen, Mol Biol Evol 2002 19 6 908 17 12032247
-
(2002)
Mol Biol Evol
, vol.19
, Issue.6
, pp. 908-17
-
-
Yang, Z.1
Nielsen, R.2
-
48
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
10.1093/molbev/msm088. 17483113
-
PAML 4: phylogenetic analysis by maximum likelihood. Z Yang, Mol Biol Evol 2007 24 8 1586 91 10.1093/molbev/msm088 17483113
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1586-91
-
-
Yang, Z.1
-
49
-
-
48449101412
-
Standard and generalized McDonald-Kreitman test: A website to detect selection by comparing different classes of DNA sites
-
WEB SERVER 10.1093/nar/gkn337. 18515345
-
Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites. R Egea S Casillas A Barbadilla, Nucleic Acids Res 2008 36 Web Server 157 62 10.1093/nar/gkn337 18515345
-
(2008)
Nucleic Acids Res
, Issue.36
, pp. 23157-62
-
-
Egea, R.1
Casillas, S.2
Barbadilla, A.3
-
50
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
2513255
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. F Tajima, Genetics 1989 123 3 585 95 2513255
-
(1989)
Genetics
, vol.123
, Issue.3
, pp. 585-95
-
-
Tajima, F.1
-
51
-
-
77949527981
-
Pegas: An R package for population genetics with an integrated-modular approach
-
10.1093/bioinformatics/btp696. 20080509
-
pegas: an R package for population genetics with an integrated-modular approach. E Paradis, Bioinformatics 2010 26 3 419 20 10.1093/bioinformatics/ btp696 20080509
-
(2010)
Bioinformatics
, vol.26
, Issue.3
, pp. 419-20
-
-
Paradis, E.1
-
52
-
-
33751104704
-
Improved method for predicting linear B-cell epitopes
-
10.1186/1745-7580-2-2. 16635264
-
Improved method for predicting linear B-cell epitopes. JEP Larsen O Lund M Nielsen, Immunome Res 2006 2 2 10.1186/1745-7580-2-2 16635264
-
(2006)
Immunome Res
, vol.2
, pp. 2
-
-
Larsen, J.E.P.1
Lund, O.2
Nielsen, M.3
-
53
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
10.1002/elps.1150181505. 9504803
-
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. N Guex MC Peitsch, Electrophoresis 1997 18 15 2714 23 10.1002/elps.1150181505 9504803
-
(1997)
Electrophoresis
, vol.18
, Issue.15
, pp. 2714-23
-
-
Guex, N.1
Peitsch, M.C.2
|