메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Time-series clustering of gene expression in irradiated and bystander fibroblasts: an application of FBPA clustering

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE DEACETYLASE; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; LYSINE SPECIFIC DEMETHYLASE 5B; NUCLEAR PROTEIN; PROTEIN P53; UNCLASSIFIED DRUG; METALLOTHIONEIN;

EID: 78650780108     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-2     Document Type: Article
Times cited : (39)

References (60)
  • 1
    • 0003426232 scopus 로고    scopus 로고
    • Health effects of exposure to radon. BEIR VI. Committee on the Health Risks of Exposure to Radon
    • Washington DC: National Academy Press, BEIR National Research Council V
    • BEIR National Research Council V Health effects of exposure to radon. BEIR VI. Committee on the Health Risks of Exposure to Radon. 1999, Washington DC: National Academy Press, BEIR National Research Council V.
    • (1999)
  • 2
    • 0037600691 scopus 로고    scopus 로고
    • Domestic radon risks may be dominated by bystander effects--but the risks are unlikely to be greater than we thought
    • 10.1097/00004032-200307000-00018, 12852476
    • Brenner DJ, Sachs RK. Domestic radon risks may be dominated by bystander effects--but the risks are unlikely to be greater than we thought. Health Phys 2003, 85(1):103-108. 10.1097/00004032-200307000-00018, 12852476.
    • (2003) Health Phys , vol.85 , Issue.1 , pp. 103-108
    • Brenner, D.J.1    Sachs, R.K.2
  • 3
    • 0034839833 scopus 로고    scopus 로고
    • The role of promotion in carcinogenesis from protracted high-LET exposure
    • Curtis SB, Luebeck EG, Hazelton WD, Moolgavkar SH. The role of promotion in carcinogenesis from protracted high-LET exposure. Phys Med 2001, 17(Suppl 1):157-160.
    • (2001) Phys Med , vol.17 , Issue.SUPPL 1 , pp. 157-160
    • Curtis, S.B.1    Luebeck, E.G.2    Hazelton, W.D.3    Moolgavkar, S.H.4
  • 4
    • 77952882545 scopus 로고    scopus 로고
    • Genomic instability after targeted irradiation of human lymphocytes: Evidence for inter-individual differences under bystander conditions
    • 3004239, 20347853
    • Kadhim MA, Lee R, Moore SR, Macdonald DA, Chapman KL, Patel G, Prise KM. Genomic instability after targeted irradiation of human lymphocytes: Evidence for inter-individual differences under bystander conditions. Mutat Res 2010, 688(1-2):91-4. 3004239, 20347853.
    • (2010) Mutat Res , vol.688 , Issue.1-2 , pp. 91-94
    • Kadhim, M.A.1    Lee, R.2    Moore, S.R.3    Macdonald, D.A.4    Chapman, K.L.5    Patel, G.6    Prise, K.M.7
  • 5
    • 0026454677 scopus 로고
    • Induction of sister chromatid exchanges by extremely low doses of alpha-particles
    • Nagasawa H, Little JB. Induction of sister chromatid exchanges by extremely low doses of alpha-particles. Cancer Res 1992, 52(22):6394-6396.
    • (1992) Cancer Res , vol.52 , Issue.22 , pp. 6394-6396
    • Nagasawa, H.1    Little, J.B.2
  • 6
    • 0031674026 scopus 로고    scopus 로고
    • Studies of bystander effects in human fibroblasts using a charged particle microbeam
    • 10.1080/095530098141087, 9881726
    • Prise KM, Belyakov OV, Folkard M, Michael BD. Studies of bystander effects in human fibroblasts using a charged particle microbeam. Int J Radiat Biol 1998, 74(6):793-798. 10.1080/095530098141087, 9881726.
    • (1998) Int J Radiat Biol , vol.74 , Issue.6 , pp. 793-798
    • Prise, K.M.1    Belyakov, O.V.2    Folkard, M.3    Michael, B.D.4
  • 7
    • 0034007865 scopus 로고    scopus 로고
    • Induction of a bystander mutagenic effect of alpha particles in mammalian cells
    • 10.1073/pnas.030420797, 15760, 10681418
    • Zhou H, Randers-Pehrson G, Waldren CA, Vannais D, Hall EJ, Hei TK. Induction of a bystander mutagenic effect of alpha particles in mammalian cells. Proc Natl Acad Sci USA 2000, 97(5):2099-2104. 10.1073/pnas.030420797, 15760, 10681418.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.5 , pp. 2099-2104
    • Zhou, H.1    Randers-Pehrson, G.2    Waldren, C.A.3    Vannais, D.4    Hall, E.J.5    Hei, T.K.6
  • 8
    • 33646046779 scopus 로고    scopus 로고
    • Bystander-induced differentiation: a major response to targeted irradiation of a urothelial explant model
    • Belyakov OV, Folkard M, Mothersill C, Prise KM, Michael BD. Bystander-induced differentiation: a major response to targeted irradiation of a urothelial explant model. Mutat Res 2006, 597(1-2):43-49.
    • (2006) Mutat Res , vol.597 , Issue.1-2 , pp. 43-49
    • Belyakov, O.V.1    Folkard, M.2    Mothersill, C.3    Prise, K.M.4    Michael, B.D.5
  • 9
    • 67651218200 scopus 로고    scopus 로고
    • Global gene expression analyses of bystander and alpha particle irradiated normal human lung fibroblasts: synchronous and differential responses
    • 10.1186/1755-8794-1-63, 2627914, 19108712
    • Ghandhi SA, Yaghoubian B, Amundson SA. Global gene expression analyses of bystander and alpha particle irradiated normal human lung fibroblasts: synchronous and differential responses. BMC Med Genomics 2008, 1:63. 10.1186/1755-8794-1-63, 2627914, 19108712.
    • (2008) BMC Med Genomics , vol.1 , pp. 63
    • Ghandhi, S.A.1    Yaghoubian, B.2    Amundson, S.A.3
  • 10
    • 28544438548 scopus 로고    scopus 로고
    • Radiation and the microenvironment - tumorigenesis and therapy
    • 10.1038/nrc1735, 16327765
    • Barcellos-Hoff MH, Park C, Wright EG. Radiation and the microenvironment - tumorigenesis and therapy. Nat Rev Cancer 2005, 5(11):867-875. 10.1038/nrc1735, 16327765.
    • (2005) Nat Rev Cancer , vol.5 , Issue.11 , pp. 867-875
    • Barcellos-Hoff, M.H.1    Park, C.2    Wright, E.G.3
  • 11
    • 39049106173 scopus 로고    scopus 로고
    • Systems biology and its potential role in radiobiology
    • 10.1007/s00411-007-0146-8, 18087710
    • Feinendegen L, Hahnfeldt P, Schadt EE, Stumpf M, Voit EO. Systems biology and its potential role in radiobiology. Radiat Environ Biophys 2008, 47(1):5-23. 10.1007/s00411-007-0146-8, 18087710.
    • (2008) Radiat Environ Biophys , vol.47 , Issue.1 , pp. 5-23
    • Feinendegen, L.1    Hahnfeldt, P.2    Schadt, E.E.3    Stumpf, M.4    Voit, E.O.5
  • 12
    • 34047241893 scopus 로고    scopus 로고
    • Intercellular and intracellular signaling pathways mediating ionizing radiation-induced bystander effects
    • 10.1269/jrr.06084, 17327686
    • Hamada N, Matsumoto H, Hara T, Kobayashi Y. Intercellular and intracellular signaling pathways mediating ionizing radiation-induced bystander effects. J Radiat Res (Tokyo) 2007, 48(2):87-95. 10.1269/jrr.06084, 17327686.
    • (2007) J Radiat Res (Tokyo) , vol.48 , Issue.2 , pp. 87-95
    • Hamada, N.1    Matsumoto, H.2    Hara, T.3    Kobayashi, Y.4
  • 13
    • 7644221488 scopus 로고    scopus 로고
    • Detection of chromosomal instability in alpha-irradiated and bystander human fibroblasts
    • Ponnaiya B, Jenkins-Baker G, Bigelow A, Marino S, Geard CR. Detection of chromosomal instability in alpha-irradiated and bystander human fibroblasts. Mutat Res 2004, 568(1):41-48.
    • (2004) Mutat Res , vol.568 , Issue.1 , pp. 41-48
    • Ponnaiya, B.1    Jenkins-Baker, G.2    Bigelow, A.3    Marino, S.4    Geard, C.R.5
  • 14
    • 39749144505 scopus 로고    scopus 로고
    • Epigenetic changes and nontargeted radiation effects--is there a link?
    • 10.1002/em.20361, 18172877
    • Kovalchuk O, Baulch JE. Epigenetic changes and nontargeted radiation effects--is there a link?. Environ Mol Mutagen 2008, 49(1):16-25. 10.1002/em.20361, 18172877.
    • (2008) Environ Mol Mutagen , vol.49 , Issue.1 , pp. 16-25
    • Kovalchuk, O.1    Baulch, J.E.2
  • 16
    • 64649084383 scopus 로고    scopus 로고
    • Radiation-induced bystander signalling in cancer therapy
    • 10.1038/nrc2603, 2855954, 19377507
    • Prise KM, O'Sullivan JM. Radiation-induced bystander signalling in cancer therapy. Nat Rev Cancer 2009, 9(5):351-360. 10.1038/nrc2603, 2855954, 19377507.
    • (2009) Nat Rev Cancer , vol.9 , Issue.5 , pp. 351-360
    • Prise, K.M.1    O'Sullivan, J.M.2
  • 18
    • 23044435948 scopus 로고    scopus 로고
    • Cellular mechanisms for low-dose ionizing radiation-induced perturbation of the breast tissue microenvironment
    • 10.1158/0008-5472.CAN-05-0703, 16061655
    • Tsai KK, Chuang EY, Little JB, Yuan ZM. Cellular mechanisms for low-dose ionizing radiation-induced perturbation of the breast tissue microenvironment. Cancer Res 2005, 65(15):6734-6744. 10.1158/0008-5472.CAN-05-0703, 16061655.
    • (2005) Cancer Res , vol.65 , Issue.15 , pp. 6734-6744
    • Tsai, K.K.1    Chuang, E.Y.2    Little, J.B.3    Yuan, Z.M.4
  • 19
    • 39049090111 scopus 로고    scopus 로고
    • Functional genomics in radiation biology: a gateway to cellular systems-level studies
    • 10.1007/s00411-007-0140-1, 17973116
    • Amundson SA. Functional genomics in radiation biology: a gateway to cellular systems-level studies. Radiat Environ Biophys 2008, 47(1):25-31. 10.1007/s00411-007-0140-1, 17973116.
    • (2008) Radiat Environ Biophys , vol.47 , Issue.1 , pp. 25-31
    • Amundson, S.A.1
  • 20
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation
    • 10.1073/pnas.96.6.2907, 15868, 10077610
    • Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc Natl Acad Sci USA 1999, 96(6):2907-2912. 10.1073/pnas.96.6.2907, 15868, 10077610.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.6 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3    Zhu, Q.4    Kitareewan, S.5    Dmitrovsky, E.6    Lander, E.S.7    Golub, T.R.8
  • 21
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • 10.1073/pnas.95.25.14863, 24541, 9843981
    • Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95(25):14863-14868. 10.1073/pnas.95.25.14863, 24541, 9843981.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 22
    • 35348872479 scopus 로고    scopus 로고
    • Analysis of time-series gene expression data: methods, challenges, and opportunities
    • 10.1146/annurev.bioeng.9.060906.151904, 17341157
    • Androulakis IP, Yang E, Almon RR. Analysis of time-series gene expression data: methods, challenges, and opportunities. Annu Rev Biomed Eng 2007, 9:205-228. 10.1146/annurev.bioeng.9.060906.151904, 17341157.
    • (2007) Annu Rev Biomed Eng , vol.9 , pp. 205-228
    • Androulakis, I.P.1    Yang, E.2    Almon, R.R.3
  • 23
    • 28644452470 scopus 로고    scopus 로고
    • Clustering short time series gene expression data
    • 10.1093/bioinformatics/bti1022, 15961453
    • Ernst J, Nau GJ, Bar-Joseph Z. Clustering short time series gene expression data. Bioinformatics 2005, 21(Suppl 1):i159-168. 10.1093/bioinformatics/bti1022, 15961453.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL 1
    • Ernst, J.1    Nau, G.J.2    Bar-Joseph, Z.3
  • 24
    • 4944252468 scopus 로고    scopus 로고
    • Using hidden Markov models to analyze gene expression time course data
    • 10.1093/bioinformatics/btg1036, 12855468
    • Schliep A, Schonhuth A, Steinhoff C. Using hidden Markov models to analyze gene expression time course data. Bioinformatics 2003, 19(Suppl 1):i255-263. 10.1093/bioinformatics/btg1036, 12855468.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL 1
    • Schliep, A.1    Schonhuth, A.2    Steinhoff, C.3
  • 25
    • 0037047161 scopus 로고    scopus 로고
    • Cluster analysis of gene expression dynamics
    • 10.1073/pnas.132656399, 123104, 12082179
    • Ramoni MF, Sebastiani P, Kohane IS. Cluster analysis of gene expression dynamics. Proc Natl Acad Sci USA 2002, 99(14):9121-9126. 10.1073/pnas.132656399, 123104, 12082179.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.14 , pp. 9121-9126
    • Ramoni, M.F.1    Sebastiani, P.2    Kohane, I.S.3
  • 26
    • 77950436631 scopus 로고    scopus 로고
    • A temporal precedence based clustering method for gene expression microarray data
    • 10.1186/1471-2105-11-68, 2841598, 20113513
    • Krishna R, Li CT, Buchanan-Wollaston V. A temporal precedence based clustering method for gene expression microarray data. BMC Bioinformatics 11(1):68. 10.1186/1471-2105-11-68, 2841598, 20113513.
    • BMC Bioinformatics , vol.11 , Issue.1 , pp. 68
    • Krishna, R.1    Li, C.T.2    Buchanan-Wollaston, V.3
  • 30
    • 0037095769 scopus 로고    scopus 로고
    • Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays
    • 10.1093/nar/30.10.e48, 115302, 12000853
    • Yuen T, Wurmbach E, Pfeffer RL, Ebersole BJ, Sealfon SC. Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res 2002, 30(10):e48. 10.1093/nar/30.10.e48, 115302, 12000853.
    • (2002) Nucleic Acids Res , vol.30 , Issue.10
    • Yuen, T.1    Wurmbach, E.2    Pfeffer, R.L.3    Ebersole, B.J.4    Sealfon, S.C.5
  • 31
    • 0035532141 scopus 로고    scopus 로고
    • Estimating the number of clusters in a data set via the gap statistic
    • Tibshirani R, Walther G, Hastie T. Estimating the number of clusters in a data set via the gap statistic. J Roy Stat Soc B 2001, 63:411-423.
    • (2001) J Roy Stat Soc B , vol.63 , pp. 411-423
    • Tibshirani, R.1    Walther, G.2    Hastie, T.3
  • 32
    • 0006470452 scopus 로고    scopus 로고
    • Fluorescent cDNA microarray hybridization reveals complexity and heterogeneity of cellular genotoxic stress responses
    • 10.1038/sj.onc.1202676, 10380890
    • Amundson SA, Bittner M, Chen Y, Trent J, Meltzer P, Fornace AJ. Fluorescent cDNA microarray hybridization reveals complexity and heterogeneity of cellular genotoxic stress responses. Oncogene 1999, 18(24):3666-3672. 10.1038/sj.onc.1202676, 10380890.
    • (1999) Oncogene , vol.18 , Issue.24 , pp. 3666-3672
    • Amundson, S.A.1    Bittner, M.2    Chen, Y.3    Trent, J.4    Meltzer, P.5    Fornace, A.J.6
  • 34
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • 10.1038/nprot.2008.211, 19131956
    • Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4(1):44-57. 10.1038/nprot.2008.211, 19131956.
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 35
    • 41349115432 scopus 로고    scopus 로고
    • The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
    • 10.1186/gb-2007-8-9-r183, 2375021, 17784955
    • Huang W, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA. The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biol 2007, 8(9):R183.. 10.1186/gb-2007-8-9-r183, 2375021, 17784955.
    • (2007) Genome Biol , vol.8 , Issue.9
    • Huang, W.1    Sherman, B.T.2    Tan, Q.3    Collins, J.R.4    Alvord, W.G.5    Roayaei, J.6    Stephens, R.7    Baseler, M.W.8    Lane, H.C.9    Lempicki, R.A.10
  • 36
    • 70349264585 scopus 로고    scopus 로고
    • Human metallothionein expression under normal and pathological conditions: mechanisms of gene regulation based on in silico promoter analysis
    • Laukens D, Waeytens A, De Bleser P, Cuvelier C, De Vos M. Human metallothionein expression under normal and pathological conditions: mechanisms of gene regulation based on in silico promoter analysis. Crit Rev Eukaryot Gene Expr 2009, 19(4):301-317.
    • (2009) Crit Rev Eukaryot Gene Expr , vol.19 , Issue.4 , pp. 301-317
    • Laukens, D.1    Waeytens, A.2    De Bleser, P.3    Cuvelier, C.4    De Vos, M.5
  • 37
    • 0033965593 scopus 로고    scopus 로고
    • Using MT(-/-) mice to study metallothionein and oxidative stress
    • 10.1016/S0891-5849(99)00263-4, 10699757
    • Conrad CC, Grabowski DT, Walter CA, Sabia M, Richardson A. Using MT(-/-) mice to study metallothionein and oxidative stress. Free Radic Biol Med 2000, 28(3):447-462. 10.1016/S0891-5849(99)00263-4, 10699757.
    • (2000) Free Radic Biol Med , vol.28 , Issue.3 , pp. 447-462
    • Conrad, C.C.1    Grabowski, D.T.2    Walter, C.A.3    Sabia, M.4    Richardson, A.5
  • 38
    • 0032996361 scopus 로고    scopus 로고
    • Metallothionein in radiation exposure: its induction and protective role
    • 10.1016/S0300-483X(98)00150-4, 10433372
    • Cai L, Satoh M, Tohyama C, Cherian MG. Metallothionein in radiation exposure: its induction and protective role. Toxicology 1999, 132(2-3):85-98. 10.1016/S0300-483X(98)00150-4, 10433372.
    • (1999) Toxicology , vol.132 , Issue.2-3 , pp. 85-98
    • Cai, L.1    Satoh, M.2    Tohyama, C.3    Cherian, M.G.4
  • 39
    • 55949135299 scopus 로고    scopus 로고
    • Protective role of metallothionein in bone marrow injury caused by X-irradiation
    • 10.2131/jts.33.479, 18827447
    • Shibuya K, Suzuki JS, Kito H, Naganuma A, Tohyama C, Satoh M. Protective role of metallothionein in bone marrow injury caused by X-irradiation. J Toxicol Sci 2008, 33(4):479-484. 10.2131/jts.33.479, 18827447.
    • (2008) J Toxicol Sci , vol.33 , Issue.4 , pp. 479-484
    • Shibuya, K.1    Suzuki, J.S.2    Kito, H.3    Naganuma, A.4    Tohyama, C.5    Satoh, M.6
  • 40
    • 0142244190 scopus 로고    scopus 로고
    • Differential expression of metallothionein 1 and 2 isoforms in breast cancer lines with different invasive potential: identification of a novel nonsilent metallothionein-1 H mutant variant
    • 1892412, 14578200
    • Tai SK, Tan OJ, Chow VT, Jin R, Jones JL, Tan PH, Jayasurya A, Bay BH. Differential expression of metallothionein 1 and 2 isoforms in breast cancer lines with different invasive potential: identification of a novel nonsilent metallothionein-1 H mutant variant. Am J Pathol 2003, 163(5):2009-2019. 1892412, 14578200.
    • (2003) Am J Pathol , vol.163 , Issue.5 , pp. 2009-2019
    • Tai, S.K.1    Tan, O.J.2    Chow, V.T.3    Jin, R.4    Jones, J.L.5    Tan, P.H.6    Jayasurya, A.7    Bay, B.H.8
  • 42
    • 0031723210 scopus 로고    scopus 로고
    • Requirement for cooperative interaction of interleukin-6 responsive element type 2 and glucocorticoid responsive element in the synergistic activation of mouse metallothionein-I gene by interleukin-6 and glucocorticoid
    • 10.1006/taap.1998.8452, 9705897
    • Kasutani K, Itoh N, Kanekiyo M, Muto N, Tanaka K. Requirement for cooperative interaction of interleukin-6 responsive element type 2 and glucocorticoid responsive element in the synergistic activation of mouse metallothionein-I gene by interleukin-6 and glucocorticoid. Toxicol Appl Pharmacol 1998, 151(1):143-151. 10.1006/taap.1998.8452, 9705897.
    • (1998) Toxicol Appl Pharmacol , vol.151 , Issue.1 , pp. 143-151
    • Kasutani, K.1    Itoh, N.2    Kanekiyo, M.3    Muto, N.4    Tanaka, K.5
  • 43
    • 0028358324 scopus 로고
    • The transcription factor MTF-1 is essential for basal and heavy metal-induced metallothionein gene expression
    • 395168, 8026472
    • Heuchel R, Radtke F, Georgiev O, Stark G, Aguet M, Schaffner W. The transcription factor MTF-1 is essential for basal and heavy metal-induced metallothionein gene expression. EMBO J 1994, 13(12):2870-2875. 395168, 8026472.
    • (1994) EMBO J , vol.13 , Issue.12 , pp. 2870-2875
    • Heuchel, R.1    Radtke, F.2    Georgiev, O.3    Stark, G.4    Aguet, M.5    Schaffner, W.6
  • 45
    • 73549088729 scopus 로고    scopus 로고
    • Regulation of the histone demethylase JMJD1A by hypoxia-inducible factor 1 alpha enhances hypoxic gene expression and tumor growth
    • 10.1128/MCB.00444-09, 2798291, 19858293
    • Krieg AJ, Rankin EB, Chan D, Razorenova O, Fernandez S, Giaccia AJ. Regulation of the histone demethylase JMJD1A by hypoxia-inducible factor 1 alpha enhances hypoxic gene expression and tumor growth. Mol Cell Biol 2010, 30(1):344-353. 10.1128/MCB.00444-09, 2798291, 19858293.
    • (2010) Mol Cell Biol , vol.30 , Issue.1 , pp. 344-353
    • Krieg, A.J.1    Rankin, E.B.2    Chan, D.3    Razorenova, O.4    Fernandez, S.5    Giaccia, A.J.6
  • 46
    • 34247373911 scopus 로고    scopus 로고
    • Pharmacologic inhibition of epigenetic modifications, coupled with gene expression profiling, reveals novel targets of aberrant DNA methylation and histone deacetylation in lung cancer
    • 10.1038/sj.onc.1210041, 17043644
    • Zhong S, Fields CR, Su N, Pan YX, Robertson KD. Pharmacologic inhibition of epigenetic modifications, coupled with gene expression profiling, reveals novel targets of aberrant DNA methylation and histone deacetylation in lung cancer. Oncogene 2007, 26(18):2621-2634. 10.1038/sj.onc.1210041, 17043644.
    • (2007) Oncogene , vol.26 , Issue.18 , pp. 2621-2634
    • Zhong, S.1    Fields, C.R.2    Su, N.3    Pan, Y.X.4    Robertson, K.D.5
  • 47
    • 33645690762 scopus 로고    scopus 로고
    • Epigenetic regulation of metallothionein-i gene expression: differential regulation of methylated and unmethylated promoters by DNA methyltransferases and methyl CpG binding proteins
    • 10.1002/jcb.20738, 16329111
    • Majumder S, Kutay H, Datta J, Summers D, Jacob ST, Ghoshal K. Epigenetic regulation of metallothionein-i gene expression: differential regulation of methylated and unmethylated promoters by DNA methyltransferases and methyl CpG binding proteins. J Cell Biochem 2006, 97(6):1300-1316. 10.1002/jcb.20738, 16329111.
    • (2006) J Cell Biochem , vol.97 , Issue.6 , pp. 1300-1316
    • Majumder, S.1    Kutay, H.2    Datta, J.3    Summers, D.4    Jacob, S.T.5    Ghoshal, K.6
  • 48
    • 32244443808 scopus 로고    scopus 로고
    • The paradox of histone deacetylase inhibitor-mediated modulation of cellular responses to radiation
    • 10.4161/cc.5.3.2421, 16418577
    • Karagiannis TC, El-Osta A. The paradox of histone deacetylase inhibitor-mediated modulation of cellular responses to radiation. Cell Cycle 2006, 5(3):288-295. 10.4161/cc.5.3.2421, 16418577.
    • (2006) Cell Cycle , vol.5 , Issue.3 , pp. 288-295
    • Karagiannis, T.C.1    El-Osta, A.2
  • 49
    • 1842509726 scopus 로고    scopus 로고
    • Methylation changes in muscle and liver tissues of male and female mice exposed to acute and chronic low-dose X-ray-irradiation
    • Kovalchuk O, Burke P, Besplug J, Slovack M, Filkowski J, Pogribny I. Methylation changes in muscle and liver tissues of male and female mice exposed to acute and chronic low-dose X-ray-irradiation. Mutat Res 2004, 548(1-2):75-84.
    • (2004) Mutat Res , vol.548 , Issue.1-2 , pp. 75-84
    • Kovalchuk, O.1    Burke, P.2    Besplug, J.3    Slovack, M.4    Filkowski, J.5    Pogribny, I.6
  • 50
    • 26844488765 scopus 로고    scopus 로고
    • Mechanism of radiation-induced bystander effect: role of the cyclooxygenase-2 signaling pathway
    • 10.1073/pnas.0505473102, 1253564, 16203985
    • Zhou H, Ivanov VN, Gillespie J, Geard CR, Amundson SA, Brenner DJ, Yu Z, Lieberman HB, Hei TK. Mechanism of radiation-induced bystander effect: role of the cyclooxygenase-2 signaling pathway. Proc Natl Acad Sci USA 2005, 102(41):14641-14646. 10.1073/pnas.0505473102, 1253564, 16203985.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.41 , pp. 14641-14646
    • Zhou, H.1    Ivanov, V.N.2    Gillespie, J.3    Geard, C.R.4    Amundson, S.A.5    Brenner, D.J.6    Yu, Z.7    Lieberman, H.B.8    Hei, T.K.9
  • 52
    • 34447560961 scopus 로고    scopus 로고
    • Analysis of Gene Expression Data Using BRB-Array Tools
    • 2675854, 19455231
    • Simon R, Lam A, Li MC, Ngan M, Menenzes S, Zhao Y. Analysis of Gene Expression Data Using BRB-Array Tools. Cancer Inform 2007, 3:11-17. 2675854, 19455231.
    • (2007) Cancer Inform , vol.3 , pp. 11-17
    • Simon, R.1    Lam, A.2    Li, M.C.3    Ngan, M.4    Menenzes, S.5    Zhao, Y.6
  • 53
    • 25444485444 scopus 로고    scopus 로고
    • The effects of normalization on the correlation structure of microarray data
    • 10.1186/1471-2105-6-120, 1156869, 15904488
    • Qiu X, Brooks AI, Klebanov L, Yakovlev N. The effects of normalization on the correlation structure of microarray data. BMC Bioinformatics 2005, 6:120. 10.1186/1471-2105-6-120, 1156869, 15904488.
    • (2005) BMC Bioinformatics , vol.6 , pp. 120
    • Qiu, X.1    Brooks, A.I.2    Klebanov, L.3    Yakovlev, N.4
  • 54
    • 4644289321 scopus 로고    scopus 로고
    • Human in vivo radiation-induced biomarkers: gene expression changes in radiotherapy patients
    • 10.1158/0008-5472.CAN-04-1883, 15374940
    • Amundson SA, Grace MB, McLeland CB, Epperly MW, Yeager A, Zhan Q, Greenberger JS, Fornace AJ. Human in vivo radiation-induced biomarkers: gene expression changes in radiotherapy patients. Cancer Res 2004, 64(18):6368-6371. 10.1158/0008-5472.CAN-04-1883, 15374940.
    • (2004) Cancer Res , vol.64 , Issue.18 , pp. 6368-6371
    • Amundson, S.A.1    Grace, M.B.2    McLeland, C.B.3    Epperly, M.W.4    Yeager, A.5    Zhan, Q.6    Greenberger, J.S.7    Fornace, A.J.8
  • 55
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • 10.1186/gb-2002-3-7-research0034, 126239, 12184808
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3(7):RESEARCH0034. 10.1186/gb-2002-3-7-research0034, 126239, 12184808.
    • (2002) Genome Biol , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 56
    • 56749160113 scopus 로고    scopus 로고
    • Design principles of biochemical oscillators
    • 10.1038/nrm2530, 2796343, 18971947
    • Novak B, Tyson JJ. Design principles of biochemical oscillators. Nat Rev Mol Cell Biol 2008, 9(12):981-991. 10.1038/nrm2530, 2796343, 18971947.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , Issue.12 , pp. 981-991
    • Novak, B.1    Tyson, J.J.2
  • 58
    • 0023453329 scopus 로고
    • Silhouettes - a Graphical Aid to the Interpretation and Validation of Cluster-Analysis
    • Rousseeuw PJ. Silhouettes - a Graphical Aid to the Interpretation and Validation of Cluster-Analysis. Journal of Computational and Applied Mathematics 1987, 20:53-65.
    • (1987) Journal of Computational and Applied Mathematics , vol.20 , pp. 53-65
    • Rousseeuw, P.J.1
  • 60
    • 4344611435 scopus 로고    scopus 로고
    • Properties of the Hubert-Arabie adjusted rand index
    • 10.1037/1082-989X.9.3.386, 15355155
    • Steinley D. Properties of the Hubert-Arabie adjusted rand index. Psychological Methods 2004, 9(3):386-396. 10.1037/1082-989X.9.3.386, 15355155.
    • (2004) Psychological Methods , vol.9 , Issue.3 , pp. 386-396
    • Steinley, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.