Identification of genes involved in the response of banana to crown rot disease

Molecular Plant-Microbe Interactions

Volumn 24, Issue 1, 2011, Pages 143-153

  Lassois, Ludivine ^a   Frettinger, Patrick ^b   De Bellaire, Luc De Lapeyre ^c,d   Lepoivre, Philippe ^a   Jijakli, Haissam ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b UNIVERSITÉ DE BOURGOGNE   (France)

^c CIRAD   (France)

^d CARBAP   (Cameroon)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULOSE SYNTHASE; COMPLEMENTARY DNA; DOPAMINE BETA MONOOXYGENASE; GLUCOSYLTRANSFERASE; PLANT DNA; VEGETABLE PROTEIN;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BANANA; ENZYMOLOGY; FRUIT; GENE EXPRESSION REGULATION; GENETIC PREDISPOSITION; GENETICS; METHODOLOGY; PLANT DISEASE; PLANT LEAF; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; DNA, COMPLEMENTARY; DNA, PLANT; DOPAMINE BETA-HYDROXYLASE; FRUIT; GENE EXPRESSION REGULATION, PLANT; GENETIC PREDISPOSITION TO DISEASE; GLUCOSYLTRANSFERASES; MUSA; PLANT DISEASES; PLANT LEAVES; PLANT PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

EID: 78650644120     PISSN: 08940282     EISSN: None     Source Type: Journal    
DOI: 10.1094/MPMI-01-10-0020     Document Type: Article

References (75)

1. Agrawal, G. K., Rakwal, R., and Iwahashi, H. 2002. Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues. Biochem. Biophys. Res. Commun. 294:1009-1016.
2. Agrawal, G. K., Iwahashi, H., and Rakwal, R. 2003. Rice MAPKs. Biochem. Biophys. Res. Commun. 302:171-180.
3. Avrova, A. O., Stewart, H. E., De Jong, W., Heilbronn, J., Lyon, G. D., and Birch, P. R. J. 1999. A cysteine protease gene is expressed early in resistant potato interactions with Phytophthora infestans. Mol. Plant-Microbe Interact. 12:1114-1119.
4. Bachem, C. 1996. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development. Plant J. 9:745-753.
5. Bachem, C., Oomen, R., and Visser, R. 1998. Transcript imaging with cDNA-AFLP: A step by step protocol. Plant Mol. Biol. Rep. 16:157-173.
6. Botton, A., Ferrigo, D., Scopel, C., Causin, R., Bonghi, C., and Ramina, A. 2008. A cDNA-AFLP approach to study ochratoxin A production in Aspergillus carbonarius. Int. J. Food Microbiol. 127:105-115.
7. Boyes, D. C., Nam, J., and Dangl, J. L. 1998. The Arabidopsis thaliana RPM1 disease resistance gene product is a peripheral plasma membrane protein that is degraded coincident with the hypersensitive response. Proc. Natl. Acad. Sci. U.S.A. 95:15849-15854.
8. Breyne, P., Dreesen, R., Cannoot, B., Rombaut, D., Vandepoele, K., Rombauts, S., Vanderhaeghen, R., Inze, D., and Zabeau, M. 2003. Quantitative cDNA-AFLP analysis for genome-wide expression studies. Mol. Genet. Genomics 269:173-179.
9. Brown, R. E., and Mattjus, P. 2007. Glycolipid transfer proteins. Biochim. Biophys. Acta 1771:746-776.
10. Campalans, A., Pagès, M., and Messeguer, R. 2001. Identification of differentially expressed genes by the cDNA-AFLP technique during dehydration of almond. Tree Physiol. 21:633-643.
11. Cano-Delgado, A., Penfield, S., Smith, C., Catley, M., and Bevan, M. 2003. Reduced cellulose synthesis invokes lignification and defense responses in Arabidopsis thaliana. Plant J. 34:351-362.
12. Chen, G. P., Ma, W. S., Huang, Z. J., Xu, T., Xue, Y. B., and Shen, Y. Z. 2003. Isolation and characterization of TaGSK1 involved in wheat salt tolerance. Plant Sci. 165:1369-1375.
13. Chen, W. H., Tseng, I. C., Tsai, W. C., Chiang, M. S., Chen, Y. H., and Chen, H. H. 2006. AFLP fingerprinting and conversion to sequence-tag site markers for the identification of Oncidium cultivars. J. Hortic. Sci. Biotechnol. 81:791-796
14. Czechowski, T., Stitt, M., Altmann, T., Udvardi, M. K., and Scheible, W. 2005. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139:5-17.
15. Dal Degan, F., Rocher, A., Cameron-Mills, V., and von Wettstein, D. 1994. The expression of serine carboxypeptidases during maturation and germination of the barley grain. Proc. Natl. Acad. Sci. U.S.A. 91:8209-8213.
16. de Lapeyre de Bellaire, L., Chillet, M., and Chilin-Charles, Y. 2008. Determination of banana fruit susceptibility to post-harvest diseases: Wound anthracnose, quiescent anthracnose and crown-rot. Fruits 63:183-186.
17. Devoto, A., Muskett, P. R., and Shirasu, K. 2003. Role of ubiquitination in the regulation of plant defence against pathogens. Curr. Opin. Plant Biol. 6:307-311.
18. Dilger, M., Felsenstein, F. G., and Schwarz, G. 2003. Identification and quantitative expression analysis of genes that are differentially expressed during conidial germination in Pyrenophora teres. Mol. Genet. Genomics 270:147-155.
19. Ditt, R. F., Nester, E. W., and Comaij, L. 2001. Plant gene expression response to Agrobacterium tumefaciens. Proc. Natl. Acad. Sci. U.S.A. 98:10954-10959.
20. Dong, W., Latijnhouwers, M., Jiang, R. H. Y., Meijer, H. J. G., and Govers, F. 2004. Downstream targets of the Phytophthora infestans Gα subunit PiGPA1 revealed by cDNA-AFLP. Mol. Plant Pathol. 5:483-494.
21. Edelmann, M. J., and Kessler, B. M. 2008. Ubiquitin and ubiquitin-like specific proteases targeted by infectious pathogens: Emerging patterns and molecular principles. Biochim. Biophys. Acta (BBA) Mol. Basis Dis. 1782:809-816.
22. Ellis, C., Turner, J. G., and Devoto, A. 2002. Protein complexes mediate signalling in plant responses to hormones, light, sucrose and pathogens. Plant Mol. Biol. 50:971-980.
23. Eungwanichayapant P. D., and Popluechai, S. 2009. Accumulation of catechins in tea in relation to accumulation of mRNA from genes involved in catechin biosynthesis. Plant Physiol. Biochem. 47:94-97.
24. Finlay, A. R., and Brown, A. E. 1993. The relative importance of Colletotrichum musae as a crown-rot pathogen on Windward Island bananas. Plant Pathol. 42:67-74.
25. Fukuda, T., Kido, A., Kajino, K., Tsutsumi, M., Miyauchi, Y., Tsujiuchi, T., Konishi, Y., and Hino, O. 1999. Cloning of differentially expressed genes in highly and low metastatic rat osteosarcomas by a modified cDNA-AFLP method. Biochem. Biophys. Res. Commun. 261:35-40.
26. Granat, S. J., Wilson, K. A., and Tan-Wilson, A. L. 2003. New serine carboxypeptidases in mung bean seedling cotyledons. J. Exp. Bot. 160:1263-1266.
27. Guo, J., Jiang, R. H. Y., Kamphuis, L. G., and Goversj, F. 2006. A cDNAAFLP based strategy to identify transcripts associated with avirulence in Phytophthora infestans. Fungal Genet. Biol. 43:111-123.
28. Hsu, T.-W., Tsai, W.-C., Wang, D.-P., Lin, S., Hsiao, Y.-Y., Chen, W.-H., and Chenj, H.-H. 2008. Differential gene expression analysis by cDNAAFLP between flower buds of Phalaenopsis hsiang fei cv. H. F. and its somaclonal variant. Plant Sci. 175:415-422.
29. Jullien, A., Chillet, M., and Malezieux, E. 2008. Pre-harvest growth and development, measured as accumulated degree days, determine the post-harvest green life of banana fruit. J. Hortic. Sci. Biotechnol. 83:506-512.
30. Krauss, U., and Johanson, A. 2000. Recent advances in the control of crown rot of banana in the Windward Islands. Crop Prot. 19:151-160.
31. Kruger, J., Thomas, C. M., Golstein, C., Dixon, M. S., Smoker, M., Tang, S., Mulder, L., and Jones, J. D. G. 2002. A tomato cysteine protease required for Cf-2-dependent disease resistance and suppression of autonecrosis. Science 296:744-747.
32. Kuhn, E. 2001. From library screening to microarray technology: Strategies to determine gene expression profiles and to identify differentially regulated genes in plants. Ann. Bot. 87:139-155.
33. Kulma, A., and Szopa, J. 2007. Catecholamines are active compounds in plants. Plant Sci. 172:433-440.
34. Lassois, L., de Lapeyre de Bellaire, L., and Jijakli, M. H. 2008. Biological control of crown rot of bananas with Pichia anomala strain K and Candida oleophila strain O. Biol. Control 45:410-418.
35. Lassois, L., de Lapeyre de Bellaire, L., and Jijakli, M. H. 2009. Combining an original method for preserving RNA expression in situ with an effective RNA extraction method makes it possible to study gene expression in any banana fruit tissue. Fruits 64 :127-137.
36. Lassois, L., Bastiaanse, H., Chillet, M., Jullien, A., Jijakli, H., and de Lapeyre de Bellaire, L. 2010a. Hand position on the bunch and sourcesink ratio influence the level of banana fruit susceptibility to crown rot disease. Ann. Appl. Biol. 156:221-229.
37. Lassois, L., Jijakli, M. H., Chillet, M., and de Lapeyre de Bellaire, L. 2010b. Crown rot of bananas: Pre-harvest factors involved in post-harvest disease development and integrated control methods. Plant Dis. 94:648-658.
38. Lecourieux-Quaked, F., Pugin, A., and Lebrun-Garcia, A. 2000. Phosphoproteins involved in the signal transduction of cryptogein, an elicitor of defense reactions in tobacco. Mol. Plant-Microbe Interact 13:821-829.
39. Lee, S., Kim, S.-Y., Chung, E., Joung, Y.-H., Pai, H.-S., Hur, C.-G., and Choi, D. 2004. EST and microarray analyses of pathogen-responsive genes in hot pepper (Capsicum annuum L.) non-host resistance against soybean pustule pathogen (Xanthomonas axonopodis pv. glycines). Funct. Integr. Genomics 4:196-205.
40. Liang, W., Li, C., Liu, F., Jiang, H., Li, S., Sun, J., Wu, X., and Li, C. 2009. The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responses. Cell Res. 19:307-316.
41. Lucas, J. A. 1998. Plant pathology and plant pathogens. Blackwell Science, Oxford, U.K. and Malden, MA, U.S.A.
42. Lukezic, F. L., Kaiser, W. J., and Martinez, M. M. 1967. The incidence of crown rot of boxed bananas in relation to microbial populations of the crown tissues. Can. J. Bot. 45:413-421.
43. Mace, M. E. 1963. Histochemical localization of phenols in healthy and diseased banana roots. Physiol. Plant. 16:915-925.
44. Massart, S., and Jijakli, H. 2006. Identification of differentially expressed genes by cDNA-amplified fragment length polymorphism in the biocontrol agent Pichia anomala (strain Kh5). Phytopathology 96:80-86.
45. Mbéguié-A-Mbéguié, D., Fils-Lycaon, B., Chillet, M., Hubert, O., Galas, C., and Gomez, R. 2008. Extraction and purification of total RNA from banana tissues (small scale). Fruits 63:255-261.
46. Moura, D. S., Bergey, D. R., and Ryan, C. A. 2001. Characterization and localization of a wound-inducible type I serine-carboxypeptidase from leaves of tomato plants (Lycopersicon esculentum Mill.). Planta 212:222-230.
47. Muirhead, I. F., and Deverall, B. J. 1984. Evaluation of 3,4-dihydrobenzaldehyde, dopamine and its oxidation products as inhibitors of Colletotrichum musae (Berk. et Curt.) Arx in green banana fruits. Aust. J. Bot. 32:575-582.
48. Nurnberger, T., Brunner, F., Kemmerling, B., and Piater, L. 2004. Innate immunity in plants and animals: Striking similarities and obvious differences. Immunol. Rev. 198:249-266.
49. Pautot, V., Holzer, F. M., Reisch, B., and Walling, L. L. 1993. Leucine aminopeptidase: An inducible component of the defense response in Lycopersicon esculentum (tomato). Proc. Natl. Acad. Sci. U.S.A. 90:9906-9910.
50. Pfaffl, M. W. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:2002-2007.
51. Rakwal, R., Shii, K., Agrawal, G. K., and Yonekura, M. 2001. Protein phosphatase inhibitors activate defense responses in rice (Oryza sativa) leaves. Physiol. Plant. 111:151-157.
52. Ramonell, K., Berrocal-Lobo, M., Koh, S., Wan, J., Edwards, H., Stacey, G., and Somerville, S. 2005. Loss-of-function mutations in chitin responsive genes show increased susceptibility to the powdery mildew pathogen Erysiphe cichoracearum. Plant Physiol. 138:1027-1036.
53. Reijans M., Lascaris, R., Groeneger, A. O., Wittenberg, A., Wesselink, E., van Oeveren, J., de Wit, E., Boorsma, A., Voetdijk, B., and van der Spek, H. 2003. Quantitative comparison of cDNA-AFLP, microarrays, and genechip expression data in Saccharomyces cerevisiae. Genomics 82:606-618.
54. Salinas-Mondragón, R., Garcidueñas-Piña, C., and Guzmán, P. 1999. Early elicitor induction in members of a novel multigene family coding for highly related RING-H2 proteins in Arabidopsis thaliana. Plant Mol. Biol. 40:579-590.
55. Sarowar, S., Oh, H. W., Cho, H. S., Baek, K. H., Seong, E. S., Joung, Y. H., Choi, G. J., Lee, S., and Choi, D. 2007. Capsicum annuum CCR4- associated factor CaCAF1 is necessary for plant development and defence response. Plant J. 51:792-802.
56. Serrano, M., and Guzman, P. 2004. Isolation and gene expression analysis of Arabidopsis thaliana mutants with constitutive expression of ATL2, an early elicitor-response RING-H2 zinc-finger gene. Genetics 167:919-929.
57. Shillingford, C. A. 1978. Climatic factors affecting post-harvest decay of Jamaican bananas. J. Agr. U. Puerto Rico 63:45-49.
58. Slabaugh, W. R., and Grove, M. D. 1982. Postharvest diseases of bananas and their control. Plant Dis. 66:746-750.
59. Swiedrych, A., Lorenc-Kukula, K., Skirycz, A., and Szopa, J. 2004. The catecholamine biosynthesis route in potato is affected by stress. Plant Physiol. Biochem. 42:593-600.
60. Takizawa, M., Goto, A., and Watanabe, Y. 2005. The tobacco ubiquitinactivating enzymes NtE1A and NtE1B are induced by tobacco mosaic virus, wounding and stress hormones. Mol. Cells 19:228-231.
61. Tornero, P., Conejero, V., and Vera, P. 1996. Primary structure and expression of a pathogen-induced protease (PR-P69) in tomato plants: Similarity of functional domains to subtilisin-like endoproteases. Proc. Natl. Acad. Sci. U.S.A. 93:6332-6337.
62. Trindade, L. M., Horvath, B. M., van Berloo, R., and Visser, R. G. F. 2004. Analysis of genes differentially expressed during potato tuber life cycle and isolation of their promoter regions. Plant Sci. 166:423-433.
63. Tsubaki, M., Takeuchi, F., and Nakanishi, N. 2005. Cytochrome b561 protein family: Expanding roles and versatile transmembrane electron transfer abilities as predicted by a new classification system and protein sequence motif analyses. Biochim. Biophys. Acta (BBA) Proteins Proteomics 1753:174-190.
64. Valette, C., Andary, C., Geiger, J. P., Sarah, J. L., and Nicole, M. 1998. Histochemical and cytochemical investigations of phenols in roots of banana infected by the burrowing nematode Radopholus similis. Phytopathology 88:1141-1148.
65. Van der Hoorn, R. A. L., and Jones, J. D. G. 2004. The plant proteolytic machinery and its role in defence. Curr. Opin. Plant Biol. 7:400-407.
66. Van Loon, L. C., Rep, M., and Pieterse, C. M. J. 2006. Significance of inducible defense-related proteins in infected plants. Annu. Rev. Phytopathol. 44:135-162.
67. Venkatesh, B., Hettwer, U., Koopmann, B., and Karlovsky, P. 2005. Conversion of cDNA differential display results (DDRT-PCR) into quantitative transcription profiles. BMC Genomics 6:Art. No. 51.
68. Verelst, W. i. m., and Asard, H. a. n. 2004. Analysis of an Arabidopsis thaliana protein family, structurally related to cytochromes b 561 and potentially involved in catecholamine biochemistry in plants. J. Plant Physiol. 161:175-181.
69. Walley, J. W., Coughlan, S., Hudson, M. E., Covington, M. F., Kaspi, R., Banu, G., Harmer, S. L., and Dehesh, K. 2007. Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. PLoS Genet. 3:e172.
70. Wan, C., and Wilkins, T. 1994. A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.). Anal. Biochem. 223:7-12.
71. Wuyts, N., De Waele, D., and Swennenj, R. 2006. Extraction and partial characterization of polyphenol oxidase from banana (Musa acuminate Grande naine) roots. Plant Physiol. Biochem. 44:308-314.
72. Wuyts, N., Lognay, G., Verscheure, M., Marlier, M., De Waele, D., and Swennen, R. 2007. Potential physical and chemical barriers to infection by the burrowing nematode Radopholus similis in roots of susceptible and resistant banana (Musa spp.). Plant Pathol. 56:878-890.
73. Xia, Y., Suzuki, H., Borevitz, J., Blount, J., Guo, Z., Patel, K., Dixon, R. A., and Lamb, C. 2004. An extracellular aspartic protease functions in Arabidopsis disease resistance signaling. EMBO (Eur. Mol. Biol. Organ.) J. 23:980-988.
74. Zeng, L.-R., Vega-Sanchez, M. E., Zhu, T., and Wang, G.-L. 2006. Ubiquitination- mediated protein degradation and modification: An emerging theme in plant-microbe interactions. Cell Res. 16:413-426.
75. Zhang, L. Meakin, H., and Dickinson, M. 2003. Isolation of genes expressed during compatible interactions between leaf rust (Puccinia triticina) and wheat using cDNA-AFLP. Mol. Plant Pathol. 4:469-477.