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Volumn 82, Issue 6, 2003, Pages 606-618

Quantitative comparison of cDNA-AFLP, microarrays, and genechip expression data in Saccharomyces cerevisiae

Author keywords

cDNA AFLP; Differential gene expression; GeneChip; Glucose repression; Microarrays; Quantitative genome wide expression analysis; Saccharomyces cerevisiae

Indexed keywords

COMPLEMENTARY DNA;

EID: 0242678280     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0888-7543(03)00179-4     Document Type: Article
Times cited : (82)

References (27)
  • 1
    • 0016823571 scopus 로고
    • Ribosomal RNA metabolism in synchronized plasmacytoma cells
    • Eikhom T.S., Abraham K.A., Dowben R.M. Ribosomal RNA metabolism in synchronized plasmacytoma cells. Exp. Cell. Res. 91:1975;301-309.
    • (1975) Exp. Cell. Res. , vol.91 , pp. 301-309
    • Eikhom, T.S.1    Abraham, K.A.2    Dowben, R.M.3
  • 2
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270:1995;467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 3
    • 0034040755 scopus 로고    scopus 로고
    • Transcriptional profiling: Is it worth the money?
    • Hoheisel J.D., Vingron M. Transcriptional profiling Is it worth the money? Res. Microbiol. 151:2000;113-119.
    • (2000) Res. Microbiol. , vol.151 , pp. 113-119
    • Hoheisel, J.D.1    Vingron, M.2
  • 4
    • 0026674886 scopus 로고
    • Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction
    • Liang P., Pardee A.B. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science. 257:1992;967-971.
    • (1992) Science , vol.257 , pp. 967-971
    • Liang, P.1    Pardee, A.B.2
  • 6
    • 0028834605 scopus 로고
    • AFLP: A new technique for DNA fingerprinting
    • Vos P., et al. AFLP A new technique for DNA fingerprinting . Nucleic Acids Res. 23:1995;4407-4414.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4407-4414
    • Vos, P.1
  • 7
    • 0033905729 scopus 로고    scopus 로고
    • An efficient cDNA-AFLP-based strategy for the identification of putative pathogenicity factors from the potato cyst nematode Globodera rostochiensis
    • Qin L., et al. An efficient cDNA-AFLP-based strategy for the identification of putative pathogenicity factors from the potato cyst nematode Globodera rostochiensis. Mol. Plant Microbe Interact. 13:2000;830-836.
    • (2000) Mol. Plant Microbe Interact. , vol.13 , pp. 830-836
    • Qin, L.1
  • 8
    • 0034786931 scopus 로고    scopus 로고
    • CDNA-AFLP analysis unravels a genome-wide hrpG-regulon in the plant pathogen Xanthomonas campestris pv
    • Noel L., Thieme F., Nennstiel D., Bonas U. cDNA-AFLP analysis unravels a genome-wide hrpG-regulon in the plant pathogen Xanthomonas campestris pv. vesicatoria. Mol. Microbiol. 41:2001;1271-1281.
    • (2001) Vesicatoria. Mol. Microbiol. , vol.41 , pp. 1271-1281
    • Noel, L.1    Thieme, F.2    Nennstiel, D.3    Bonas, U.4
  • 9
    • 0030138199 scopus 로고    scopus 로고
    • Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development
    • Bachem C.W., et al. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP Analysis of gene expression during potato tuber development . Plant J. 9:1996;745-753.
    • (1996) Plant J. , vol.9 , pp. 745-753
    • Bachem, C.W.1
  • 10
    • 0033623543 scopus 로고    scopus 로고
    • A novel gene "Niban" upregulated in renal carcinogenesis: Cloning by the cDNA-amplified fragment length polymorphism approach
    • Majima S., Kajino K., Fukuda T., Otsuka F., Hino O. A novel gene "Niban" upregulated in renal carcinogenesis Cloning by the cDNA-amplified fragment length polymorphism approach . Jpn. J. Cancer Res. 91:2000;869-874.
    • (2000) Jpn. J. Cancer Res. , vol.91 , pp. 869-874
    • Majima, S.1    Kajino, K.2    Fukuda, T.3    Otsuka, F.4    Hino, O.5
  • 11
    • 0036184531 scopus 로고    scopus 로고
    • Analysis of differential messenger RNA expression between bovine blastocysts produced in different culture systems: Implications for blastocyst quality
    • Rizos D., et al. Analysis of differential messenger RNA expression between bovine blastocysts produced in different culture systems Implications for blastocyst quality . Biol. Reprod. 66:2002;589-595.
    • (2002) Biol. Reprod. , vol.66 , pp. 589-595
    • Rizos, D.1
  • 12
    • 0035118384 scopus 로고    scopus 로고
    • Genome-wide expression analysis of plant cell cycle modulated genes
    • Breyne P., Zabeau M. Genome-wide expression analysis of plant cell cycle modulated genes. Curr. Opin. Plant Biol. 4:2001;136-142.
    • (2001) Curr. Opin. Plant Biol. , vol.4 , pp. 136-142
    • Breyne, P.1    Zabeau, M.2
  • 13
    • 0036007669 scopus 로고    scopus 로고
    • Comprehensive gene expression analysis by transcript profiling
    • Donson J., et al. Comprehensive gene expression analysis by transcript profiling. Plant Mol. Biol. 48:2002;75-97.
    • (2002) Plant Mol. Biol. , vol.48 , pp. 75-97
    • Donson, J.1
  • 14
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi J.L., Iyer V.R., Brown P. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.3
  • 16
    • 0032837252 scopus 로고    scopus 로고
    • Computational methods for the identification of differential and coordinated gene expression
    • Claverie J.M. Computational methods for the identification of differential and coordinated gene expression. Hum. Mol. Genet. 8:1999;1821-1832.
    • (1999) Hum. Mol. Genet. , vol.8 , pp. 1821-1832
    • Claverie, J.M.1
  • 17
    • 0022385984 scopus 로고
    • Differential expression of the three yeast glyceraldehyde-3-phosphate dehydrogenase genes
    • McAlister L., Holland M.J. Differential expression of the three yeast glyceraldehyde-3-phosphate dehydrogenase genes. J. Biol. Chem. 260:1985;15019-15027.
    • (1985) J. Biol. Chem. , vol.260 , pp. 15019-15027
    • McAlister, L.1    Holland, M.J.2
  • 18
    • 0030568978 scopus 로고    scopus 로고
    • The study of methionine uptake in Saccharomyces cerevisiae reveals a new family of amino acid permeases
    • Isnard A.D., Thomas D., Surdin-Kerjan Y. The study of methionine uptake in Saccharomyces cerevisiae reveals a new family of amino acid permeases. J. Mol. Biol. 262:1996;473-484.
    • (1996) J. Mol. Biol. , vol.262 , pp. 473-484
    • Isnard, A.D.1    Thomas, D.2    Surdin-Kerjan, Y.3
  • 19
    • 0035145527 scopus 로고    scopus 로고
    • Quantitative assessment of cDNA microarrays - Comparison with Northern blot analysis
    • Taniguchi M., Miura K., Iwao H., Yamanaka S. Quantitative assessment of cDNA microarrays - Comparison with Northern blot analysis. Genomics. 71:2001;34-39.
    • (2001) Genomics , vol.71 , pp. 34-39
    • Taniguchi, M.1    Miura, K.2    Iwao, H.3    Yamanaka, S.4
  • 20
    • 0034283071 scopus 로고    scopus 로고
    • Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis
    • Ishii M., et al. Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis. Genomics. 68:2000;136-143.
    • (2000) Genomics , vol.68 , pp. 136-143
    • Ishii, M.1
  • 21
    • 0034075621 scopus 로고    scopus 로고
    • Regulation of the yeast INO1 gene: The products of the INO2, INO4 and OPI1 regulatory genes are not required for repression in response to inositol
    • Graves J.A., Henry S.A. Regulation of the yeast INO1 gene The products of the INO2, INO4 and OPI1 regulatory genes are not required for repression in response to inositol . Genetics. 154:2000;1485-1495.
    • (2000) Genetics , vol.154 , pp. 1485-1495
    • Graves, J.A.1    Henry, S.A.2
  • 22
    • 0032900471 scopus 로고    scopus 로고
    • Evidence for the involvement of the Glc7-Reg1 phosphatase and the Snf1-Snf4 kinase in the regulation of INO1 transcription in the Saccharomyces cerevisiae
    • Shirra M.K., Arndt K.M. Evidence for the involvement of the Glc7-Reg1 phosphatase and the Snf1-Snf4 kinase in the regulation of INO1 transcription in the Saccharomyces cerevisiae. Genetics. 152:1999;73-87.
    • (1999) Genetics , vol.152 , pp. 73-87
    • Shirra, M.K.1    Arndt, K.M.2
  • 23
    • 0035165304 scopus 로고    scopus 로고
    • Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays
    • Evertsz E.M., Au-Young J., Ruvolo M.V., Lim A.C., Reynolds M.A. Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays. BioTechniques. 31:2001;1182-1192.
    • (2001) BioTechniques , vol.31 , pp. 1182-1192
    • Evertsz, E.M.1    Au-Young, J.2    Ruvolo, M.V.3    Lim, A.C.4    Reynolds, M.A.5
  • 24
    • 0034669668 scopus 로고    scopus 로고
    • Assessment of the sensitivity and specificity of oligonucleotide (50-mer) microarray
    • Kane M.D., et al. Assessment of the sensitivity and specificity of oligonucleotide (50-mer) microarray. Nucleic Acids Res. 28:2000;4552-4557.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4552-4557
    • Kane, M.D.1
  • 25
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408 (2002) 796-815.
    • (2002) Nature , vol.408 , pp. 796-815
  • 26
    • 0030699475 scopus 로고    scopus 로고
    • Yeast microarrays for genome wide parallel genetic and gene expression analysis
    • Lashkari D.A., et al. Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proc. Natl. Acad. Sci. USA. 94:1997;13057-13062.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 13057-13062
    • Lashkari, D.A.1
  • 27
    • 0030770513 scopus 로고    scopus 로고
    • Glucose repression affects ion homeostasis in yeast through the regulation of the stress-activated ENA1 gene
    • Alepuz P.M., Cunningham K.W., Estruch F. Glucose repression affects ion homeostasis in yeast through the regulation of the stress-activated ENA1 gene. Mol. Microbiol. 26:1997;91-98.
    • (1997) Mol. Microbiol. , vol.26 , pp. 91-98
    • Alepuz, P.M.1    Cunningham, K.W.2    Estruch, F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.