Transcript Imaging with cDNA-AFLP: A Step-by-Step Protocol

Plant Molecular Biology Reporter

Volumn 16, Issue 2, 1998, Pages 157-

  Bachem, Christian W B ^a   Oomen, Ronald J F J ^a   Visser, Richard G F ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

cDNA AFLP; Plant development; RNA fingerprinting

Indexed keywords

ANGUILLIFORMES;

EID: 0032237346     PISSN: 07359640     EISSN: None     Source Type: Journal    
DOI: 10.1023/a:1007468801806     Document Type: Article

References (16)

1. Altschul SF, Gish W, Miller W, Myers EW and Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
2. Bachem CWB, van der Hoeven RS, deBruijn SM, Vreugdenhil D, Zabeau M and Visser RGF (1996) Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP analysis of gene expression during potato tuber development. The Plant J 9: 745-753.
3. Bauer D, Warthoe P, Rohde M, and Struss M (1994) PCR methods and applications manual supplement, pp S805-809. Cdd Spring Harbor University Press, Cold Spring Harbor, NY.
4. Diachenko LB, Ledesma J, Chenchik AA and Siebert PD (1996) Combining the technique of RNA fingerprinting and differential display to obtain differentially expressed mRNA. Biochem Biophys Res Com 219: 824-828.
5. Du-Toit R, Victor TC, and Van-Helden PD (1993) Empirical evaluation of conditions influencing the polymerase chain reaction: enterotoxigenic Escherichia coli as a test case. Euro J Clin Chem Clin Biochem 31: 225-231.
6. Habu Y, Fukadatanaka S, Hisatomi Y and Iida S (1997) Amplified restriction fragment length polymorphism-based mRNA fingerprinting using a single restriction enzyme that recognizes a 4-bp sequence. Biochem Biophys Res Comm 234: 516-521.
7. Ivanova NB and Belyavsky AV (1995) Identification of differentially expressed genes by restriction endonuclease-based gene expression fingerprinting. Nucl Acids Res 23: 2954-2958.
8. Kato K (1996) RNA fingerprinting by molecular indexing. Nucl Acids Res 24: 394-395.
9. Liang P, Bauer D, Averboukh L, Warthoe P, Rohrwild M, Muller H, Strauss M and Pardee AB (1995) Analysis of altered gene expression by differential display. Meth Enzymol 254: 304-321.
10. Liang P and Pardee AB (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257: 967-971.
11. Mathieu-Daudé F, Cheng C, Welsh J and McClelland M (1996) DNA rehybridization during PCR: the 'C-ot effect' and its consequences. Nucl Acids Res 24: 1504-1507.
12. Money T, Reader S, Qu IJ, Dunford RP and Moore G (1996) AFLP-based mRNA fingerprinting. Nucl Acids Res 24: 2616-2617.
13. Sambrook J, Fritsch EF and Maniatis T (1989) Molecular doning: a laboratory manual. Cold Spring Harbor University Press, Cold Spring Harbor, NY.
14. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Pelman J, Kuiper M and Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucl Acids Res 23: 4407-4414.
15. Welsh J, Chada K, Dalal SS, Ralph D, Cheng R and McClelland M (1992) Arbitrarily primed PCR fingerprinting of RNA. Nucl Acids Res 20: 4965-4970.
16. Zhao S, Ooi SL and Pardee AB (1995) New primer strategy improves precision of differential display. BioTechniques 18: 842-850.