-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., W. Gish, W. Miller, E.W. Myers, and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
70449709427
-
Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia
-
Bickhart, D.M., J.P. Gogarten, P. Lapierre, L.S. Tisa, P. Normand, and D.R. Benson. 2009. Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia. BMC Genomics 10:468.
-
(2009)
BMC Genomics
, vol.10
, pp. 468
-
-
Bickhart, D.M.1
Gogarten, J.P.2
Lapierre, P.3
Tisa, L.S.4
Normand, P.5
Benson, D.R.6
-
3
-
-
0030608397
-
Characterization of a mosaic ISS1 element and evidence for the recent horizontal transfer of two different types of ISS1 between Streptococcus thermophilus and Lactococcus lactis
-
Bourgoin, F., G. Guédon, M. Pébay, Y. Roussel, C. Panis, and B. Decaris. 1996. Characterization of a mosaic ISS1 element and evidence for the recent horizontal transfer of two different types of ISS1 between Streptococcus thermophilus and Lactococcus lactis. Gene 178:15-23.
-
(1996)
Gene
, vol.178
, pp. 15-23
-
-
Bourgoin, F.1
Guédon, G.2
Pébay, M.3
Roussel, Y.4
Panis, C.5
Decaris, B.6
-
4
-
-
0043197312
-
Phage as agents of lateral gene transfer
-
Canchaya, C., G. Fournous, S. Chibani-Chennoufi, M.-L. Dillmann, and H. Brüssow. 2003. Phage as agents of lateral gene transfer. Curr. Opin. Microbiol. 6:417-424.
-
(2003)
Curr. Opin. Microbiol
, vol.6
, pp. 417-424
-
-
Canchaya, C.1
Fournous, G.2
Chibani-Chennoufi, S.3
Dillmann, M.-L.4
Brüssow, H.5
-
5
-
-
0030878556
-
Three insertion sequences from the cyanobacterium Synechocystis PCC6803 support the occurrence of horizontal DNA transfer among bacteria
-
Cassier-Chauvat, C., M. Poncelet, and F. Chauvat. 1997. Three insertion sequences from the cyanobacterium Synechocystis PCC6803 support the occurrence of horizontal DNA transfer among bacteria. Gene 195:257-266.
-
(1997)
Gene
, vol.195
, pp. 257-266
-
-
Cassier-Chauvat, C.1
Poncelet, M.2
Chauvat, F.3
-
6
-
-
25144476144
-
-
In J. Huisman, H.C.P. Matthijs, and P.M. Visser, (ed.), Harmful Cyanobacteria. Springer, Dordrecht
-
Codd, G.A., J. Lindsay, F.M. Young, L.F. Morrison, and J.S. Metcalf. 2005. Harmful cyanobacteria, p. 1-23. In J. Huisman, H.C.P. Matthijs, and P.M. Visser, (ed.), Harmful Cyanobacteria. Springer, Dordrecht.
-
(2005)
Harmful Cyanobacteria
, pp. 1-23
-
-
Codd, G.A.1
Lindsay, J.2
Young, F.M.3
Morrison, L.F.4
Metcalf, J.S.5
-
7
-
-
33645232361
-
Genomic islands and the ecology and evolution of Prochlorococcus
-
Coleman, M.L., M.B. Sullivan, A.C. Martiny, C. Steglich, K. Barry, E.F. DeLong, and S.W. Chisholm. 2006. Genomic islands and the ecology and evolution of Prochlorococcus. Science 311:1768-1770.
-
(2006)
Science
, vol.311
, pp. 1768-1770
-
-
Coleman, M.L.1
Sullivan, M.B.2
Martiny, A.C.3
Steglich, C.4
Barry, K.5
Delong, E.F.6
Chisholm, S.W.7
-
8
-
-
0038054297
-
The role played by viruses in the evolution of their hosts: A view based on informational protein phylogenies
-
Filée, J., P. Forterre, and J. Laurent. 2003. The role played by viruses in the evolution of their hosts: a view based on informational protein phylogenies. Res. Microbiol. 154:237-243.
-
(2003)
Res. Microbiol
, vol.154
, pp. 237-243
-
-
Filée, J.1
Forterre, P.2
Laurent, J.3
-
9
-
-
0032810166
-
Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins
-
Forterre, P. 1999. Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins. Mol. Microbiol. 33:457-465.
-
(1999)
Mol. Microbiol
, vol.33
, pp. 457-465
-
-
Forterre, P.1
-
10
-
-
46649118468
-
Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium
-
Frangeul, L., P. Quillardet, A.M. Castets, et al. 2008. Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium. BMC genomics 9:274.
-
(2008)
BMC Genomics
, vol.9
, pp. 274
-
-
Frangeul, L.1
Quillardet, P.2
Castets, A.M.3
-
11
-
-
0033542481
-
Marine viruses and their biogeochemical and ecological effects
-
Fuhrman, J.A. 1999. Marine viruses and their biogeochemical and ecological effects. Nature 399:541-548.
-
(1999)
Nature
, vol.399
, pp. 541-548
-
-
Fuhrman, J.A.1
-
12
-
-
0023855310
-
Why do unrelated insertion sequences occur together in the genome of Escherichia coli?
-
Hartl, D.L., and S.A. Sawyer. 1988. Why do unrelated insertion sequences occur together in the genome of Escherichia coli? Genetics 118:537-541.
-
(1988)
Genetics
, vol.118
, pp. 537-541
-
-
Hartl, D.L.1
Sawyer, S.A.2
-
13
-
-
7744220354
-
Evolutionary dynamics of insertion sequences in Helicobacter pylori
-
Kalia, A., A.K. Mukhopadhyay, G. Dailide, Y. Ito, T. Azuma, B.C.Y. Wong, and D.E. Berg. 2004. Evolutionary dynamics of insertion sequences in Helicobacter pylori. J. Bacteriol. 186:7508-7520.
-
(2004)
J. Bacteriol
, vol.186
, pp. 7508-7520
-
-
Kalia, A.1
Mukhopadhyay, A.K.2
Dailide, G.3
Ito, Y.4
Azuma, T.5
Wong, B.C.Y.6
Berg, D.E.7
-
14
-
-
60349101170
-
Analysis of the mitochondrial genome, transcripts, and electron transport activity in the dinoflagellate Alexandrium catenella (Gonyaulacales, Dinophyceae)
-
Kamikawa, R., H. Nishimura, and Y. Sako. 2009. Analysis of the mitochondrial genome, transcripts, and electron transport activity in the dinoflagellate Alexandrium catenella (Gonyaulacales, Dinophyceae). Phycol. Res. 57:1-11.
-
(2009)
Phycol. Res
, vol.57
, pp. 1-11
-
-
Kamikawa, R.1
Nishimura, H.2
Sako, Y.3
-
15
-
-
40949129063
-
Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843
-
Kaneko, T., N. Nakajima, S. Okamoto, et al. 2007. Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843. DNA Res. 14:247-256.
-
(2007)
DNA Res
, vol.14
, pp. 247-256
-
-
Kaneko, T.1
Nakajima, N.2
Okamoto, S.3
-
16
-
-
20444445338
-
-
7th ed. The National Institute for Environmental Studies, Tsukuba, Japa
-
Kasai, F., M. Kawachi, M. Erata, and M.M. Watanabe. 2004. NIES-Collection List of Strains, 7th ed. The National Institute for Environmental Studies, Tsukuba, Japa.
-
(2004)
NIES-Collection List of Strains
-
-
Kasai, F.1
Kawachi, M.2
Erata, M.3
Watanabe, M.M.4
-
17
-
-
0028029010
-
Insertion sequence IS6100 on plasmid pOAD2, which degrades nylon oligomers
-
Kato, K., K. Ohtsuki, H. Mitsuda, T. Yomo, S. Negoro, and I. Urabe. 1994. Insertion sequence IS6100 on plasmid pOAD2, which degrades nylon oligomers. J. Bacteriol. 176:1197-1200.
-
(1994)
J. Bacteriol
, vol.176
, pp. 1197-1200
-
-
Kato, K.1
Ohtsuki, K.2
Mitsuda, H.3
Yomo, T.4
Negoro, S.5
Urabe, I.6
-
18
-
-
0033806018
-
Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori
-
Kersulyte, D., A.K. Mukhopadhyay, M. Shirai, T. Nakazawa, and D.E. Berg. 2000. Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori. J. Bacteriol. 182:5300-5308.
-
(2000)
J. Bacteriol
, vol.182
, pp. 5300-5308
-
-
Kersulyte, D.1
Mukhopadhyay, A.K.2
Shirai, M.3
Nakazawa, T.4
Berg, D.E.5
-
19
-
-
0000166036
-
Detection and 16S rDNA sequence analysis of a bloom-forming cyanobacterial genus Microcystis
-
Kondo, R., M. Komura, S. Hiroishi, and Y. Hata. 1998. Detection and 16S rDNA sequence analysis of a bloom-forming cyanobacterial genus Microcystis. Fish. Sci. 64:840-841.
-
(1998)
Fish. Sci
, vol.64
, pp. 840-841
-
-
Kondo, R.1
Komura, M.2
Hiroishi, S.3
Hata, Y.4
-
20
-
-
0026735995
-
The evolution of insertion sequences within enteric bacteria
-
Lawrence, J.G., H. Ochman, and D.L. Hartl. 1992. The evolution of insertion sequences within enteric bacteria. Genetics 131:9-20.
-
(1992)
Genetics
, vol.131
, pp. 9-20
-
-
Lawrence, J.G.1
Ochman, H.2
Hartl, D.L.3
-
21
-
-
33846483575
-
Insertion sequencedriven diversification creates a globally dispersed emerging multiresistant subspecies of
-
Leavis, H.L., R.J.L. Willems, W.J.B. van Wamel, F.H. Schuren, M.P.M. Caspers, and M.J.M. Bonten. 2007. Insertion sequencedriven diversification creates a globally dispersed emerging multiresistant subspecies of E. faecium. PLoS Pathog. 3:e7.
-
(2007)
E. Faecium. PLoS Pathog
, vol.3
-
-
Leavis, H.L.1
Willems, R.J.L.2
van Wamel, W.J.B.3
Schuren, F.H.4
Caspers, M.P.M.5
Bonten, M.J.M.6
-
22
-
-
3342915398
-
Transfer of photosynthesis genes to and from Prochlorococcus viruses
-
Lindell, D., M.B. Sullivan, Z.I. Johnson, A.C. Tolonen, F. Rohwer, and S.W. Chisholm. 2004. Transfer of photosynthesis genes to and from Prochlorococcus viruses. Proc. Natl. Acad. Sci. USA 101:11013-11018.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11013-11018
-
-
Lindell, D.1
Sullivan, M.B.2
Johnson, Z.I.3
Tolonen, A.C.4
Rohwer, F.5
Chisholm, S.W.6
-
23
-
-
34548513271
-
Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution
-
Lindell, D., J.D. Jaffe, M.L. Coleman, et al. 2007. Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature 449:83-86.
-
(2007)
Nature
, vol.449
, pp. 83-86
-
-
Lindell, D.1
Jaffe, J.D.2
Coleman, M.L.3
-
24
-
-
0029360727
-
Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR
-
Liu, Y.G., N. Mitsukawa, T. Oosumi, and R.F. Whittier. 1995. Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8:457-463.
-
(1995)
Plant J
, vol.8
, pp. 457-463
-
-
Liu, Y.G.1
Mitsukawa, N.2
Oosumi, T.3
Whittier, R.F.4
-
25
-
-
0028949381
-
Thermal asymmetric interlaced PCR: Automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking
-
Liu, Y.G., and R.F. Whittier. 1995. Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics 25:674-681.
-
(1995)
Genomics
, vol.25
, pp. 674-681
-
-
Liu, Y.G.1
Whittier, R.F.2
-
27
-
-
0041736065
-
Marine ecosystems: Bacterial photosynthesis genes in a virus
-
Mann, N.H., A. Cook, A. Millard, S. Bailey, and M. Clokie. 2003. Marine ecosystems: bacterial photosynthesis genes in a virus. Nature 424:741.
-
(2003)
Nature
, vol.424
, pp. 741
-
-
Mann, N.H.1
Cook, A.2
Millard, A.3
Bailey, S.4
Clokie, M.5
-
28
-
-
38349118808
-
Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses
-
Monier, A., J.-M. Claverie, and H. Ogata. 2007. Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. BMC Genomics 8:456.
-
(2007)
BMC Genomics
, vol.8
, pp. 456
-
-
Monier, A.1
Claverie, J.-M.2
Ogata, H.3
-
29
-
-
0017647444
-
Transposable genetic elements as agents of gene instability and chromosomal rearrangements
-
Nevers, P., and H. Saedler. 1977. Transposable genetic elements as agents of gene instability and chromosomal rearrangements. Nature 268:109-115.
-
(1977)
Nature
, vol.268
, pp. 109-115
-
-
Nevers, P.1
Saedler, H.2
-
30
-
-
0025198355
-
Viral mortality of marine bacteria and cyanobacteria
-
Proctor, L.M., and J.A. Fuhrman. 1990. Viral mortality of marine bacteria and cyanobacteria. Nature 343:60-62.
-
(1990)
Nature
, vol.343
, pp. 60-62
-
-
Proctor, L.M.1
Fuhrman, J.A.2
-
31
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F., and J.P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
32
-
-
28444476607
-
The genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny
-
Sakaguchi, Y., T. Hayashi, K. Kurokawa, et al. 2005. The genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny. Proc. Natl. Acad. Sci. USA 102:17472-17477.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 17472-17477
-
-
Sakaguchi, Y.1
Hayashi, T.2
Kurokawa, K.3
-
33
-
-
0023122287
-
Distribution and abundance of insertion sequences among natural isolates of Escherichia coli
-
Sawyer, S.A., D.E. Dykhuizen, R.F. DuBose, L. Green, T. Mutangadura-Mhlanga, D.F. Wolczyk, and D.L. Hartl. 1987. Distribution and abundance of insertion sequences among natural isolates of Escherichia coli. Genetics 115:51-63.
-
(1987)
Genetics
, vol.115
, pp. 51-63
-
-
Sawyer, S.A.1
Dykhuizen, D.E.2
Dubose, R.F.3
Green, L.4
Mutangadura-Mhlanga, T.5
Wolczyk, D.F.6
Hartl, D.L.7
-
34
-
-
70249108768
-
Photosystem I gene cassettes are present in marine virus genomes
-
Sharon, I., A. Alperovitch, F. Rohwer, et al. 2009. Photosystem I gene cassettes are present in marine virus genomes. Nature 461:258-262.
-
(2009)
Nature
, vol.461
, pp. 258-262
-
-
Sharon, I.1
Alperovitch, A.2
Rohwer, F.3
-
35
-
-
0036229438
-
Diversity in the serine recombinases
-
Smith, M.C.M., and H.M. Thorpe. 2002. Diversity in the serine recombinases. Mol. Microbiol. 44:299-307.
-
(2002)
Mol. Microbiol
, vol.44
, pp. 299-307
-
-
Smith, M.C.M.1
Thorpe, H.M.2
-
36
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
37
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle, C.A. 2007. Marine viruses-major players in the global ecosystem. Nat. Rev. Microbiol. 5:801-812.
-
(2007)
Nat. Rev. Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
38
-
-
85000482965
-
Development and application of quantitative detection of cyanophages phylogenetically related to cyanophage Ma-LMM01 infecting Microcystis aeruginosa in fresh water
-
Takashima, Y., T. Yoshida, M. Yoshida, Y. Shirai, Y. Tomaru, Y. Takao, S. Hiroishi, and K. Nagasaki. 2007. Development and application of quantitative detection of cyanophages phylogenetically related to cyanophage Ma-LMM01 infecting Microcystis aeruginosa in fresh water. Microbes Environ. 22:207-213.
-
(2007)
Microbes Environ
, vol.22
, pp. 207-213
-
-
Takashima, Y.1
Yoshida, T.2
Yoshida, M.3
Shirai, Y.4
Tomaru, Y.5
Takao, Y.6
Hiroishi, S.7
Nagasaki, K.8
-
39
-
-
36448942567
-
Multilocus sequence typing (MLST) reveals high genetic diversity and clonal population structure of the toxic cyanobacterium Microcystis aeruginosa
-
Tanabe, Y., F. Kasai, and M.M. Watanabe. 2007. Multilocus sequence typing (MLST) reveals high genetic diversity and clonal population structure of the toxic cyanobacterium Microcystis aeruginosa. Microbiology 153:3695-3703.
-
(2007)
Microbiology
, vol.153
, pp. 3695-3703
-
-
Tanabe, Y.1
Kasai, F.2
Watanabe, M.M.3
-
40
-
-
70349915871
-
Quantification of Microcystis in a eutrophic lake by simple DNA extraction and SYBR Green real-time PCR
-
Tomioka, N., T. Nagai, T. Kawasaki, A. Imai, K. Matsushige, and K. Kohata. 2008. Quantification of Microcystis in a eutrophic lake by simple DNA extraction and SYBR Green real-time PCR. Microbes Environ. 23:306-312.
-
(2008)
Microbes Environ
, vol.23
, pp. 306-312
-
-
Tomioka, N.1
Nagai, T.2
Kawasaki, T.3
Imai, A.4
Matsushige, K.5
Kohata, K.6
-
41
-
-
20444500932
-
Genetic diversity of the toxic cyanobacterium Microcystis in Lake Mikata
-
Yoshida, M., T. Yoshida, Y. Takashima, R. Kondo, and S. Hiroishi. 2005. Genetic diversity of the toxic cyanobacterium Microcystis in Lake Mikata. Environ. Toxicol. 20:229-234.
-
(2005)
Environ. Toxicol
, vol.20
, pp. 229-234
-
-
Yoshida, M.1
Yoshida, T.2
Takashima, Y.3
Kondo, R.4
Hiroishi, S.5
-
42
-
-
47249165613
-
Intra-specific phenotypic and genotypic variation in toxic cyanobacterial Microcystis strains
-
Yoshida, M., T. Yoshida, M. Satomi, Y. Takashima, N. Hosoda, and S. Hiroishi. 2008. Intra-specific phenotypic and genotypic variation in toxic cyanobacterial Microcystis strains. J. Appl. Microbiol. 105:407-415.
-
(2008)
J. Appl. Microbiol
, vol.105
, pp. 407-415
-
-
Yoshida, M.1
Yoshida, T.2
Satomi, M.3
Takashima, Y.4
Hosoda, N.5
Hiroishi, S.6
-
43
-
-
77957141407
-
Real-time PCR detection of host-mediated cyanophage gene transcripts during infection of a natural Microcystis aeruginosa population
-
Yoshida, M., T. Yoshida, Y. Yoshida-Takashima, A. Kashima, and S. Hiroishi. 2010. Real-time PCR detection of host-mediated cyanophage gene transcripts during infection of a natural Microcystis aeruginosa population. Microbes Environ. 25:211-215.
-
(2010)
Microbes Environ
, vol.25
, pp. 211-215
-
-
Yoshida, M.1
Yoshida, T.2
Yoshida-Takashima, Y.3
Kashima, A.4
Hiroishi, S.5
-
44
-
-
33144484037
-
Isolation and characterization of a cyanophage infecting the toxic cyanobacterium Microcystis aeruginosa
-
Yoshida, T., Y. Takashima, Y. Tomaru, Y. Shirai, Y. Takao, S. Hiroishi, and K. Nagasaki. 2006. Isolation and characterization of a cyanophage infecting the toxic cyanobacterium Microcystis aeruginosa. Appl. Environ. Microbiol. 72:1239-1274.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 1239-1274
-
-
Yoshida, T.1
Takashima, Y.2
Tomaru, Y.3
Shirai, Y.4
Takao, Y.5
Hiroishi, S.6
Nagasaki, K.7
-
45
-
-
39749136161
-
Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies
-
Yoshida, T., K. Nagasaki, Y. Takashima, Y. Shirai, Y. Tomaru, Y. Takao, S. Sakamoto, S. Hiroishi, and H. Ogata. 2008. Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies. J. Bacteriol. 190:1762-1772.
-
(2008)
J. Bacteriol
, vol.190
, pp. 1762-1772
-
-
Yoshida, T.1
Nagasaki, K.2
Takashima, Y.3
Shirai, Y.4
Tomaru, Y.5
Takao, Y.6
Sakamoto, S.7
Hiroishi, S.8
Ogata, H.9
|