-
1
-
-
0026427033
-
Test for rodent polyphyly
-
1:STN:280:DyaK38%2FhvVantw%3D%3D 10.1038/353610b0 1922381
-
MW Allard MM Miyamoto RL Honeycutt 1991 Test for rodent polyphyly Nature 353 610 611 1:STN:280:DyaK38%2FhvVantw%3D%3D 10.1038/353610b0 1922381
-
(1991)
Nature
, vol.353
, pp. 610-611
-
-
Allard, M.W.1
Miyamoto, M.M.2
Honeycutt, R.L.3
-
2
-
-
0141609704
-
A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships
-
DOI 10.1016/S1055-7903(03)00118-0
-
H Amrine-Madsen KP Koepfli RK Wayne MS Springer 2003 A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships Mol Phylogenet Evol 28 225 240 1:CAS:528:DC%2BD3sXls1eqt7c%3D 10.1016/S1055-7903(03)00118-0 12878460 (Pubitemid 37446824)
-
(2003)
Molecular Phylogenetics and Evolution
, vol.28
, Issue.2
, pp. 225-240
-
-
Amrine-Madsen, H.1
Koepfli, K.-P.2
Wayne, R.K.3
Springer, M.S.4
-
3
-
-
0037062433
-
Mammalian mitogenomic relationships and the root of the eutherian tree
-
DOI 10.1073/pnas.102164299
-
U Arnason JA Adegoke K Bodin EW Born YB Esa A Gullberg M Nilsson RV Short X Xu A Janke 2002 Mammalian mitogenomic relationships and the root of the eutherian tree Proc Natl Acad Sci USA 99 8151 8156 1:CAS:528: DC%2BD38XkvVGisLc%3D 10.1073/pnas.102164299 12034869 (Pubitemid 34651021)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.12
, pp. 8151-8156
-
-
Arnason, U.1
Adegoke, J.A.2
Bodin, K.3
Born, E.W.4
Esa, Y.B.5
Gullberg, A.6
Nilsson, M.7
Short, R.V.8
Xu, X.9
Janke, A.10
-
4
-
-
38349150505
-
Fast genes and slow clades: Comparative rates of molecular evolution in mammals
-
Bininda-Emonds ORP (2007) Fast genes and slow clades: comparative rates of molecular evolution in mammals. Evol Bioinf 2007:3:59-85
-
(2007)
Evol Bioinf
, vol.2007
, Issue.3
, pp. 59-85
-
-
Orp, B.1
-
5
-
-
0033015732
-
Archaea sister group of bacteria? Indications from tree reconstruction artifacts in ancient phylogenies
-
1:CAS:528:DyaK1MXjslGitbk%3D 10368959
-
H Brinkmann H Philippe 1999 Archaea sister group of bacteria? Indications from tree reconstruction artifacts in ancient phylogenies Mol Biol Evol 16 817 825 1:CAS:528:DyaK1MXjslGitbk%3D 10368959
-
(1999)
Mol Biol Evol
, vol.16
, pp. 817-825
-
-
Brinkmann, H.1
Philippe, H.2
-
6
-
-
10644238478
-
Phylogenetic signal in nucleotide data from seed plants: Implications for resolving the seed plant tree of life
-
1:CAS:528:DC%2BD2cXhtVKisrjJ 10.3732/ajb.91.10.1599
-
JC Burleigh S Mathews 2004 Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life Am J Bot 91 1599 1613 1:CAS:528:DC%2BD2cXhtVKisrjJ 10.3732/ajb.91.10.1599
-
(2004)
Am J Bot
, vol.91
, pp. 1599-1613
-
-
Burleigh, J.C.1
Mathews, S.2
-
7
-
-
0028362463
-
Phylogenetic place of guinea pigs: No support of the rodent-polyphyly hypothesis from maximum-likelihood analyses of multiple protein sequences
-
1:CAS:528:DyaK2cXksl2hu7k%3D 8078399
-
Y Cao J Adachi T Yano M Hasegawa 1994 Phylogenetic place of guinea pigs: no support of the rodent-polyphyly hypothesis from maximum-likelihood analyses of multiple protein sequences Mol Biol Evol 11 593 604 1:CAS:528: DyaK2cXksl2hu7k%3D 8078399
-
(1994)
Mol Biol Evol
, vol.11
, pp. 593-604
-
-
Cao, Y.1
Adachi, J.2
Yano, T.3
Hasegawa, M.4
-
9
-
-
43349102636
-
The adaptive evolution of the mammalian mitochondrial genome
-
DOI 10.1186/1471-2164-9-119
-
RR da Fonseca WE Johnson SJ O'Brien MJ Ramos A Antunes 2008 The adaptive evolution of the mammalian mitochondrial genome BMC Genomics 9 119 10.1186/1471-2164-9-119 18318906 (Pubitemid 351658756)
-
(2008)
BMC Genomics
, vol.9
, pp. 119
-
-
Da Fonseca, R.R.1
Johnson, W.E.2
O'Brien, S.J.3
Ramos, M.J.4
Antunes, A.5
-
11
-
-
84959798530
-
Cases in which parsimony or compatibility methods can be positively misleading
-
10.2307/2412923
-
J Felsenstein 1978 Cases in which parsimony or compatibility methods can be positively misleading Syst Zool 27 401 410 10.2307/2412923
-
(1978)
Syst Zool
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
12
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
10.2307/2408678
-
J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791 10.2307/2408678
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
13
-
-
26444612274
-
Maximum likelihood outperforms maximum parsimony even when evolutionary rates are heterotachous
-
DOI 10.1093/molbev/msi212
-
SR Gadagkar S Kumar 2005 Maximum likelihood outperforms maximum parsimony even when evolutionary rates are heterotachous Mol Biol Evol 22 2139 2141 1:CAS:528:DC%2BD2MXhtFKjsL3F 10.1093/molbev/msi212 16014870 (Pubitemid 41437794)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.11
, pp. 2139-2141
-
-
Gadagkar, S.R.1
Kumar, S.2
-
14
-
-
0030464460
-
SEAVIEW and PHYLO-WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
1:CAS:528:DyaK2sXhtlWktLw%3D 9021275
-
N Galtier M Gouy C Gauthier 1996 SEAVIEW and PHYLO-WIN: two graphic tools for sequence alignment and molecular phylogeny Comput Appl Biosci 12 543 548 1:CAS:528:DyaK2sXhtlWktLw%3D 9021275
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gauthier, C.3
-
15
-
-
26444556992
-
A call for likelihood phylogenetics even when the process of sequence evolution is heterogeneous
-
DOI 10.1016/j.ympev.2005.03.027, PII S1055790305001041
-
EA Gaucher MM Miyamoto 2005 A call for likelihood phylogenetics even when the process of sequence evolution is heterogeneous Mol Phylogenet Evol 37 928 931 10.1016/j.ympev.2005.03.027 16291095 (Pubitemid 41597800)
-
(2005)
Molecular Phylogenetics and Evolution
, vol.37
, Issue.3
, pp. 928-931
-
-
Gaucher, E.A.1
Miyamoto, M.M.2
-
16
-
-
12344282043
-
A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods
-
DOI 10.1093/molbev/msi012
-
AV Gibson P Gowri-Shankar G Higgs MA Rattray 2005 Comprehensive analysis of mammalian mitochondrial genome base composition and improved methods Mol Biol Evol 22 251 264 1:CAS:528:DC%2BD2MXptFGhsw%3D%3D 10.1093/molbev/msi012 15483324 (Pubitemid 40130193)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.2
, pp. 251-264
-
-
Gibson, A.1
Gowri-Shankar, V.2
Higgs, P.G.3
Rattray, M.4
-
17
-
-
33748936102
-
A new test of phylogenetic model fitness addresses the issue of the basal angiosperm phylogeny
-
DOI 10.1016/j.gene.2006.07.002, PII S0378111906004331
-
VV Goremykin FH Hellwig 2006 A new test of phylogenetic model fitness addresses the issue of the basal angiosperm phylogeny Gene 381 81 91 1:CAS:528:DC%2BD28XhtVWks7bK 10.1016/j.gene.2006.07.002 16959440 (Pubitemid 44436768)
-
(2006)
Gene
, vol.381
, Issue.1-2
, pp. 81-91
-
-
Goremykin, V.V.1
Hellwig, F.H.2
-
18
-
-
0030052344
-
Non-coding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms
-
1:CAS:528:DyaK28Xnt12hsw%3D%3D 8587503
-
VV Goremykin V Bobrova J Pahnke A Troitsky A Antonov W Martin 1996 Non-coding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms Mol Biol Evol 13 383 396 1:CAS:528:DyaK28Xnt12hsw%3D%3D 8587503
-
(1996)
Mol Biol Evol
, vol.13
, pp. 383-396
-
-
Goremykin, V.V.1
Bobrova, V.2
Pahnke, J.3
Troitsky, A.4
Antonov, A.5
Martin, W.6
-
19
-
-
62949175457
-
Removal of the noisy characters from the chloroplast genome-scale data suggests a revision of phylogenetic placements of Amborella and Ceratophyllum
-
1:CAS:528:DC%2BD1MXjt1SrsrY%3D 10.1007/s00239-009-9206-9 19247564
-
V Goremykin R Viola F Hellwig 2009 Removal of the noisy characters from the chloroplast genome-scale data suggests a revision of phylogenetic placements of Amborella and Ceratophyllum J Mol Evol 68 197 204 1:CAS:528: DC%2BD1MXjt1SrsrY%3D 10.1007/s00239-009-9206-9 19247564
-
(2009)
J Mol Evol
, vol.68
, pp. 197-204
-
-
Goremykin, V.1
Viola, R.2
Hellwig, F.3
-
20
-
-
0026428609
-
Is the guinea-pig a rodent?
-
1:CAS:528:DyaK3MXksVKltbo%3D 10.1038/351649a0 2052090
-
D Graur WA Hide WH Li 1991 Is the guinea-pig a rodent? Nature 351 649 652 1:CAS:528:DyaK3MXksVKltbo%3D 10.1038/351649a0 2052090
-
(1991)
Nature
, vol.351
, pp. 649-652
-
-
Graur, D.1
Hide, W.A.2
Li, W.H.3
-
21
-
-
0026550202
-
The biochemical phylogeny of guinea-pigs and gundis, and the paraphyly of the order Rodentia
-
1:STN:280:DyaK38zgs1KltQ%3D%3D 10.1016/0305-0491(92)90327-N
-
D Graur WA Hide A Zharkikh W-H Li 1992 The biochemical phylogeny of guinea-pigs and gundis, and the paraphyly of the order Rodentia Comp Biochem Phys B 101 495 498 1:STN:280:DyaK38zgs1KltQ%3D%3D 10.1016/0305-0491(92)90327-N
-
(1992)
Comp Biochem Phys B
, vol.101
, pp. 495-498
-
-
Graur, D.1
Hide, W.A.2
Zharkikh, A.3
Li, W.-H.4
-
22
-
-
0036593395
-
Ancient Phylogenetic Relationships
-
DOI 10.1006/tpbi.2002.1593
-
S Gribaldo H Philippe 2002 Ancient phylogenetic relationships Theor Popul Biol 61 391 408 10.1006/tpbi.2002.1593 12167360 (Pubitemid 38051044)
-
(2002)
Theoretical Population Biology
, vol.61
, Issue.4
, pp. 391-408
-
-
Gribaldo, S.1
Philippe, H.2
-
23
-
-
0027118548
-
Rodent polyphyly?
-
1:STN:280:DyaK387mvVWjug%3D%3D 10.1038/355595a0 1599552
-
M Hasegawa Y Cao J Adachi T Yano 1992 Rodent polyphyly? Nature 355 595 595 1:STN:280:DyaK387mvVWjug%3D%3D 10.1038/355595a0 1599552
-
(1992)
Nature
, vol.355
, pp. 595-595
-
-
Hasegawa, M.1
Cao, Y.2
Adachi, J.3
Yano, T.4
-
25
-
-
0242290116
-
The major shifts of human duplicated genes
-
DOI 10.1016/S0378-1119(03)00704-2
-
K Jabbari E Rayko G Bernardi 2003 The major shifts of human duplicated genes Gene 317 203 208 1:CAS:528:DC%2BD3sXosFyis7g%3D 10.1016/S0378-1119(03) 00704-2 14604809 (Pubitemid 37356935)
-
(2003)
Gene
, vol.317
, Issue.1-2
, pp. 203-208
-
-
Jabbari, K.1
Rayko, E.2
Bernardi, G.3
-
26
-
-
0031026266
-
The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
-
DOI 10.1073/pnas.94.4.1276
-
A Janke X Xu U Arnason 1997 The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria Proc Natl Acad Sci USA 94 1276 1281 1:CAS:528:DyaK2sXhtlGlu7o%3D 10.1073/pnas.94.4.1276 9037043 (Pubitemid 27087841)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.4
, pp. 1276-1281
-
-
Janke, A.1
Xu, X.2
Arnason, U.3
-
27
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
1:CAS:528:DC%2BD1cXitlWjtg%3D%3D 10.1073/pnas.0709121104 18048330
-
RK Jansen Z Cai LA Raubeson H Daniell CW Depamphilis J Leebens-Mack KF Muller M Guisinger-Bellian RC Haberle AK Hansen, et al. 2007 Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns Proc Natl Acad Sci USA 104 19369 19374 1:CAS:528:DC%2BD1cXitlWjtg%3D%3D 10.1073/pnas.0709121104 18048330
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19369-19374
-
-
Jansen, R.K.1
Cai, Z.2
Raubeson, L.A.3
Daniell, H.4
Depamphilis, C.W.5
Leebens-Mack, J.6
Muller, K.F.7
Guisinger-Bellian, M.8
Haberle, R.C.9
Hansen, A.K.10
-
28
-
-
33645850710
-
Phylogenomics: The beginning of incongruence?
-
1:CAS:528:DC%2BD28XjtFCqsbk%3D 10.1016/j.tig.2006.02.003 16490279
-
O Jeffroy H Brinkmann F Delsuc H Philippe 2006 Phylogenomics: the beginning of incongruence? Trends Genet 22 225 231 1:CAS:528: DC%2BD28XjtFCqsbk%3D 10.1016/j.tig.2006.02.003 16490279
-
(2006)
Trends Genet
, vol.22
, pp. 225-231
-
-
Jeffroy, O.1
Brinkmann, H.2
Delsuc, F.3
Philippe, H.4
-
29
-
-
33846906954
-
Site specific rates of mitochondrial genomes and the phylogeny of eutheria
-
DOI 10.1186/1471-2148-7-8
-
KM Kjer RL Honeycutt 2007 Site specific rates of mitochondrial genomes and the phylogeny of eutheria BMC Evol Biol 7 8 10.1186/1471-2148-7-8 17254354 (Pubitemid 46237529)
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 8
-
-
Kjer, K.M.1
Honeycutt, R.L.2
-
30
-
-
51249125088
-
SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis
-
10.1186/1471-2105-9-341
-
M Kostka M Uzlikova I Cepicka J Flegr 2008 SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis BMC Bioinf 9 34 10.1186/1471-2105-9-341
-
(2008)
BMC Bioinf
, vol.9
, pp. 34
-
-
Kostka, M.1
Uzlikova, M.2
Cepicka, I.3
Flegr, J.4
-
31
-
-
84963056475
-
A method of selection of characters in numerical taxonomy
-
10.2307/2412604
-
WJ Le Quesne 1969 A method of selection of characters in numerical taxonomy Syst Zool 18 201 205 10.2307/2412604
-
(1969)
Syst Zool
, vol.18
, pp. 201-205
-
-
Le Quesne, W.J.1
-
32
-
-
24744449757
-
Identifying the basal angiosperm node in chloroplast genome phylogenies: Sampling one's way out of the Felsenstein zone
-
DOI 10.1093/molbev/msi191
-
J Leebens-Mack LA Raubeson LY Cui JV Kuehl MH Fourcade TW Chumley JL Boore RK Jansen CW de Pamphilis 2005 Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone Mol Biol Evol 22 1948 1963 1:CAS:528:DC%2BD2MXhtVGhur7N 10.1093/molbev/msi191 15944438 (Pubitemid 41298063)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.10
, pp. 1948-1963
-
-
Leebens-Mack, J.1
Raubeson, L.A.2
Cui, L.3
Kuehl, J.V.4
Fourcade, M.H.5
Chumley, T.W.6
Boore, J.L.7
Jansen, R.K.8
DePamphilis, C.W.9
-
33
-
-
0027103147
-
The molecular taxonomy and evolution of the guinea pig
-
1:CAS:528:DyaK38Xls1ygs7c%3D 1624762
-
W-H Li WA Hide A Zharkikh D-P Ma D Graur 1992 The molecular taxonomy and evolution of the guinea pig J Hered 83 174 181 1:CAS:528:DyaK38Xls1ygs7c%3D 1624762
-
(1992)
J Hered
, vol.83
, pp. 174-181
-
-
Li, W.-H.1
Hide, W.A.2
Zharkikh, A.3
Ma, D.-P.4
Graur, D.5
-
34
-
-
0037055264
-
Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires
-
DOI 10.1016/S0378-1119(02)00695-9, PII S0378111902006959
-
Y Lin P Waddell D Penny 2002 Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires Gene 294 119 129 1:CAS:528:DC%2BD38XmvF2qtro%3D 10.1016/S0378-1119(02)00695-9 12234673 (Pubitemid 35291019)
-
(2002)
Gene
, vol.294
, Issue.1-2
, pp. 119-129
-
-
Lin, Y.-H.1
Waddell, P.J.2
Penny, D.3
-
35
-
-
0036897677
-
Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling
-
1:CAS:528:DC%2BD38Xps12hsrg%3D 12446798
-
YH Lin PA McLenachan AR Gore MJ Phillips R Ota MD Hendy D Penny 2002 Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling Mol Biol Evol 19 2060 2070 1:CAS:528:DC%2BD38Xps12hsrg%3D 12446798
-
(2002)
Mol Biol Evol
, vol.19
, pp. 2060-2070
-
-
Lin, Y.H.1
McLenachan, P.A.2
Gore, A.R.3
Phillips, M.J.4
Ota, R.5
Hendy, M.D.6
Penny, D.7
-
36
-
-
0032825223
-
The root of the tree of life in the light of the covarion model
-
DOI 10.1007/PL00006572
-
P Lopez P Forterre H Philippe 1999 The root of the tree of life in the light of the covarion model J Mol Evol 49 496 508 1:CAS:528:DyaK1MXmslWhtro%3D 10.1007/PL00006572 10486007 (Pubitemid 29463392)
-
(1999)
Journal of Molecular Evolution
, vol.49
, Issue.4
, pp. 496-508
-
-
Lopez, P.1
Forterre, P.2
Philippe, H.3
-
37
-
-
0000281405
-
Monophyly or polyphyly of the order Rodentia: Possible conflict between morphological and molecular interpretations
-
10.1007/BF01041591
-
WP Luckett J-L Hartenberger 1993 Monophyly or polyphyly of the order Rodentia: possible conflict between morphological and molecular interpretations J Mamm Evol 1 127 147 10.1007/BF01041591
-
(1993)
J Mamm Evol
, vol.1
, pp. 127-147
-
-
Luckett, W.P.1
Hartenberger, J.-L.2
-
38
-
-
0027483517
-
Structure and evolution of opposum, guinea pig, and porcupine cytochrome b genes
-
1:CAS:528:DyaK3sXisV2js70%3D 8315653
-
D-P Ma A Zharkikh D Graur JL VandeBerg WH Li 1993 Structure and evolution of opposum, guinea pig, and porcupine cytochrome b genes J Mol Evol 36 327 334 1:CAS:528:DyaK3sXisV2js70%3D 8315653
-
(1993)
J Mol Evol
, vol.36
, pp. 327-334
-
-
Ma, D.-P.1
Zharkikh, A.2
Graur, D.3
Vandeberg, J.L.4
Li, W.H.5
-
39
-
-
0035252569
-
Parallel adaptive radiations in two major clades of placental mammals
-
DOI 10.1038/35054544
-
O Madsen M Scally CJ Douady DJ Kao RW DeBry R Adkins HM Amrine MJ Stanhope WW de Jong MS Springer 2001 Parallel adaptive radiations in two major clades of placental mammals Nature 409 610 614 1:CAS:528:DC%2BD3MXhtVygur4%3D 10.1038/35054544 11214318 (Pubitemid 32154811)
-
(2001)
Nature
, vol.409
, Issue.6820
, pp. 610-614
-
-
Madsen, O.1
Scally, M.2
Douady, C.J.3
Kao, D.J.4
DeBry, R.W.5
Adkins, R.6
Amrine, H.M.7
Stanhope, M.J.8
De Jong, W.W.9
Springer, M.S.10
-
40
-
-
37549054628
-
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
-
10.1073/pnas.0708072104 18048334
-
MJ Moore CD Bell PS Soltis DE Soltis 2007 Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms Proc Natl Acad Sci USA 104 19363 19368 10.1073/pnas.0708072104 18048334
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19363-19368
-
-
Moore, M.J.1
Bell, C.D.2
Soltis, P.S.3
Soltis, D.E.4
-
41
-
-
0035157068
-
Molecular evidence of an African Phiomorpha-South American Caviomorpha clade and support for Hystricognathi based on the complete mitochondrial genome of the cane rat (Thryonomys swinderianus)
-
DOI 10.1006/mpev.2000.0870
-
SK Mouchaty F Catzeflis A Janke U Arnason 2001 Molecular evidence of an African phiomorpha-south america caviomorpha clade and support for hystricognathi based on the complete mitochondrial genome of the cane rat (Thryonomys swinderianus) Mol Phylogenet Evol 18 127 135 1:CAS:528: DC%2BD3MXmt1Wqsg%3D%3D 10.1006/mpev.2000.0870 11161749 (Pubitemid 32113883)
-
(2001)
Molecular Phylogenetics and Evolution
, vol.18
, Issue.1
, pp. 127-135
-
-
Mouchaty, S.K.1
Catzeflis, F.2
Janke, A.3
Arnason, U.4
-
42
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
DOI 10.1038/35054550
-
WJ Murphy E Eizirik WE Johnson YP Zhang OA Ryder SJ O'Brien 2001 Molecular phylogenetics and the origin of placental mammals Nature 409 614 618 1:CAS:528:DC%2BD3MXhtVylt7Y%3D 10.1038/35054550 11214319 (Pubitemid 32154812)
-
(2001)
Nature
, vol.409
, Issue.6820
, pp. 614-618
-
-
Murphy, W.J.1
Eizirik, E.2
Johnson, W.E.3
Zhang, Y.P.4
Ryder, O.A.5
O'Brien, S.J.6
-
43
-
-
0035861441
-
Resolution of the early placental mammal radiation using bayesian phylogenetics
-
DOI 10.1126/science.1067179
-
WJ Murphy E Eizirik SJ O'Brien O Madsen M Scally CJ Douady E Teeling OA Ryder MJ Stanhope WW de Jong, et al. 2001 Resolution of the early placental mammal radiation using Bayesian inference Science 294 2348 2351 1:CAS:528:DC%2BD3MXptFGrtrg%3D 10.1126/science.1067179 11743200 (Pubitemid 33140557)
-
(2001)
Science
, vol.294
, Issue.5550
, pp. 2348-2351
-
-
Murphy, W.J.1
Eizirik, E.2
O'Brien, S.J.3
Madsen, O.4
Scally, M.5
Douady, C.J.6
Teeling, E.7
Ryder, O.A.8
Stanhope, M.J.9
De Jong, W.W.10
Springer, M.S.11
-
44
-
-
0023498406
-
Earliest phylogenetic branching: Comparing rRNA-based evolutionary trees inferred with various techniques
-
1:CAS:528:DyaL1cXltVOgtr0%3D 3454291
-
G Olsen 1987 Earliest phylogenetic branching: comparing rRNA-based evolutionary trees inferred with various techniques Cold Spring Harbor Symp Quant Biol 52 825 837 1:CAS:528:DyaL1cXltVOgtr0%3D 3454291
-
(1987)
Cold Spring Harbor Symp Quant Biol
, vol.52
, pp. 825-837
-
-
Olsen, G.1
-
45
-
-
0033026606
-
Nucleotide substitution rate of mammalian mitochondrial genomes
-
1:CAS:528:DyaK1MXhvFyqu7w%3D 10.1007/PL00006487 10079281
-
G Pesole C Gissi A de Chirico C Saccone 1999 Nucleotide substitution rate of mammalian mitochondrial genomes J Mol Evol 48 427 434 1:CAS:528: DyaK1MXhvFyqu7w%3D 10.1007/PL00006487 10079281
-
(1999)
J Mol Evol
, vol.48
, pp. 427-434
-
-
Pesole, G.1
Gissi, C.2
De Chirico, A.3
Saccone, C.4
-
46
-
-
0141721426
-
The root of the mammalian tree inferred from whole mitochondrial genomes
-
DOI 10.1016/S1055-7903(03)00057-5
-
MJ Phillips D Penny 2003 The root of the mammalian tree inferred from whole mitochondrial genomes Mol Phylogenet Evol 28 171 185 1:CAS:528: DC%2BD3sXls1eqt7g%3D 10.1016/S1055-7903(03)00057-5 12878457 (Pubitemid 37446823)
-
(2003)
Molecular Phylogenetics and Evolution
, vol.28
, Issue.2
, pp. 171-185
-
-
Phillips, M.J.1
Penny, D.2
-
48
-
-
12444313041
-
Identifying and removing fast-evolving sites using compatibility analysis: An example from the Arthropoda
-
DOI 10.1080/10635150490888877
-
D Pisani 2004 Identifying and removing fast evolving sites using compatibility analysis: an example from the arthropoda Syst Biol 53 978 989 10.1080/10635150490888877 15764565 (Pubitemid 40141320)
-
(2004)
Systematic Biology
, vol.53
, Issue.6
, pp. 978-989
-
-
Pisani, D.1
-
49
-
-
33646198754
-
Molecular evidence for dim-light vision in the last common ancestor of the vertebrates
-
10.1016/j.cub.2006.03.090
-
D Pisani MM Mohun S Harris JO McIterney M Wilkinson 2006 Molecular evidence for dim-light vision in the last common ancestor of the vertebrates Curr Biol 16 318 319 10.1016/j.cub.2006.03.090
-
(2006)
Curr Biol
, vol.16
, pp. 318-319
-
-
Pisani, D.1
Mohun, M.M.2
Harris, S.3
McIterney, J.O.4
Wilkinson, M.5
-
50
-
-
0035722246
-
Biases in maximum likelihood and parsimony: A simulation approach to a 10-taxon case
-
DOI 10.1006/clad.2001.0172
-
D Pol ME Siddal 2001 Biases in maximum likelihood and parsimony: a simulation approach to a 10-taxon case Cladistics 17 266 281 10.1006/clad.2001.0172 (Pubitemid 34175743)
-
(2001)
Cladistics
, vol.17
, Issue.3
, pp. 266-281
-
-
Pol, D.1
Siddall, M.E.2
-
51
-
-
0031773680
-
ModelTest: Testing the model of DNA substitution
-
1:CAS:528:DyaK1MXktlCltw%3D%3D 10.1093/bioinformatics/14.9.817 9918953
-
D Posada KA Crandall 1998 ModelTest: testing the model of DNA substitution Bioinformatics 14 817 818 1:CAS:528:DyaK1MXktlCltw%3D%3D 10.1093/bioinformatics/14.9.817 9918953
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
52
-
-
49749129961
-
Confirming the phylogeny of mammals by use of large comparative sequence data sets
-
1:CAS:528:DC%2BD1cXhtV2it7rI 10.1093/molbev/msn104 18453548
-
AB Prasad MW Allard ED Green 2008 Confirming the phylogeny of mammals by use of large comparative sequence data sets Mol Biol Evol 25 1795 1808 1:CAS:528:DC%2BD1cXhtV2it7rI 10.1093/molbev/msn104 18453548
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1795-1808
-
-
Prasad, A.B.1
Allard, M.W.2
Green, E.D.3
-
53
-
-
23944484422
-
Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes
-
1:CAS:528:DC%2BD2MXhtVCksbzE 10.1086/431800
-
YL Qiu O Dombrovska J Lee L Li BA Whitlock F Bernasconi-Quadroni JS Rest CC Davis T Borsch KW Hilu, et al. 2005 Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes Int J Plant Sci 166 815 842 1:CAS:528:DC%2BD2MXhtVCksbzE 10.1086/431800
-
(2005)
Int J Plant Sci
, vol.166
, pp. 815-842
-
-
Qiu, Y.L.1
Dombrovska, O.2
Lee, J.3
Li, L.4
Whitlock, B.A.5
Bernasconi-Quadroni, F.6
Rest, J.S.7
Davis, C.C.8
Borsch, T.9
Hilu, K.W.10
-
54
-
-
0031947856
-
Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: Further evidence of rodent paraphyly
-
1:CAS:528:DyaK1cXislens7w%3D 9580978
-
A Reyes G Pesole C Saccone 1998 Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: further evidence of rodent paraphyly Mol Biol Evol 15 499 505 1:CAS:528:DyaK1cXislens7w%3D 9580978
-
(1998)
Mol Biol Evol
, vol.15
, pp. 499-505
-
-
Reyes, A.1
Pesole, G.2
Saccone, C.3
-
55
-
-
0034117084
-
Where do rodents fit? Evidence from the complete mitochondrial genome of Sciurus vulgaris
-
1:CAS:528:DC%2BD3cXjvFygsL0%3D 10833205
-
A Reyes C Gissi G Pesole FM Catzeflis C Saccone 2000 Where do rodents fit? Evidence from the complete mitochondrial genome of Sciurus vulgaris Mol Biol Evol 17 979 983 1:CAS:528:DC%2BD3cXjvFygsL0%3D 10833205
-
(2000)
Mol Biol Evol
, vol.17
, pp. 979-983
-
-
Reyes, A.1
Gissi, C.2
Pesole, G.3
Catzeflis, F.M.4
Saccone, C.5
-
56
-
-
0034707205
-
Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny
-
DOI 10.1016/S0378-1119(00)00438-8, PII S0378111900004388
-
A Reyes G Pesole C Saccone 2000 Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny Gene 259 177 187 1:CAS:528:DC%2BD3MXitV2ltA%3D%3D 10.1016/S0378-1119(00)00438-8 11163975 (Pubitemid 32119249)
-
(2000)
Gene
, vol.259
, Issue.1-2
, pp. 177-187
-
-
Reyes, A.1
Pesole, G.2
Saccone, C.3
-
57
-
-
1542376765
-
Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods
-
DOI 10.1093/molbev/msh033
-
A Reyes C Gissi F Catzeflis E Nevo G Pesole C Saccone 2004 Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods Mol Biol Evol 21 397 403 1:CAS:528:DC%2BD2cXisFWmu7Y%3D 10.1093/molbev/msh033 14660685 (Pubitemid 38314627)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.2
, pp. 397-403
-
-
Reyes, A.1
Gissi, C.2
Catzeflis, F.3
Nevo, E.4
Pesole, G.5
Saccone, C.6
-
58
-
-
33847656285
-
Detecting and overcoming systematic Errors in genome-scale phylogenies
-
DOI 10.1080/10635150701397643, PII 778977148
-
N Rodriguez-Ezpeleta H Brinkmann B Roure N Lartillot BF Lang H Philippe 2007 Detecting and overcoming systematic errors in genome-scale phylogenies Syst Biol 56 389 399 1:CAS:528:DC%2BD2sXhtVenurrL 10.1080/10635150701397643 17520503 (Pubitemid 46826902)
-
(2007)
Systematic Biology
, vol.56
, Issue.3
, pp. 389-399
-
-
Rodreguez-Ezpeleta, N.1
Brinkmann, H.2
Roure, B.3
Lartillot, N.4
Lang, B.F.5
Philippe, H.6
-
59
-
-
0033583163
-
Acoel flatworms: Earliest extant bilaterian metazoans, not members of platyhelminthes
-
DOI 10.1126/science.283.5409.1919
-
I Ruiz-Trillo M Riutort DT Littlewood EA Herniou J Baguna 1999 Acoel flatworms: earliest extant bilaterian Metazoans, not members of Platyhelminthes Science 283 1919 1923 1:CAS:528:DyaK1MXitVanurc%3D 10.1126/science.283.5409.1919 10082465 (Pubitemid 29144210)
-
(1999)
Science
, vol.283
, Issue.5409
, pp. 1919-1923
-
-
Ruiz-Trillo, I.1
Riutort, M.2
Littlewood, D.T.J.3
Herniou, E.A.4
Baguna, J.5
Baguna, J.6
-
60
-
-
70349932469
-
Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of eumetazoa
-
1:CAS:528:DC%2BD1MXhtFSnsb7M 10.1093/molbev/msp148 19597161
-
EA Sperling KJ Peterson D Pisani 2009 Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of eumetazoa Mol Biol Evol 26 2261 2274 1:CAS:528:DC%2BD1MXhtFSnsb7M 10.1093/molbev/msp148 19597161
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2261-2274
-
-
Sperling, E.A.1
Peterson, K.J.2
Pisani, D.3
-
61
-
-
0035142366
-
Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny phylogeny reconstruction
-
1:CAS:528:DC%2BD3MXotVOmsA%3D%3D 11158372
-
MS Springer RW Debry C Douady HM Amrine O Madsen WW de Jong MJ Stanhope 2001 Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny phylogeny reconstruction Mol Biol Evol 18 132 143 1:CAS:528: DC%2BD3MXotVOmsA%3D%3D 11158372
-
(2001)
Mol Biol Evol
, vol.18
, pp. 132-143
-
-
Springer, M.S.1
Debry, R.W.2
Douady, C.3
Amrine, H.M.4
Madsen, O.5
De Jong, W.W.6
Stanhope, M.J.7
-
63
-
-
10644253746
-
Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?
-
DOI 10.1186/1471-2148-4-35, 35
-
S Stefanovic DW Rice JD Palmer 2004 Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? BMC Evol Biol 4 35 10.1186/1471-2148-4-35 15453916 (Pubitemid 39660386)
-
(2004)
BMC Evolutionary Biology
, vol.4
, pp. 1-35
-
-
Stefanovic, S.1
Rice, D.W.2
Palmer, J.D.3
|