-
1
-
-
0031963946
-
Synonymous and nonsynonymous substitutions in mammalian genes: Intragenic correlations
-
Alvarez-Valin F., Jabbari K., Bernardi G. Synonymous and nonsynonymous substitutions in mammalian genes: intragenic correlations. J. Mol. Evol. 46:1998;37-44.
-
(1998)
J. Mol. Evol.
, vol.46
, pp. 37-44
-
-
Alvarez-Valin, F.1
Jabbari, K.2
Bernardi, G.3
-
2
-
-
0029657886
-
Localization of chi1-related helicase genes to human chromosome regions 12p11 and 12p13: Similarity between parts of these genes and conserved human telomeric-associated DNA
-
Amann J., Valentine M., Kidd V.J., Lahti J.M. Localization of chi1-related helicase genes to human chromosome regions 12p11 and 12p13: similarity between parts of these genes and conserved human telomeric- associated DNA. Genomics. 32:1996;260-265.
-
(1996)
Genomics
, vol.32
, pp. 260-265
-
-
Amann, J.1
Valentine, M.2
Kidd, V.J.3
Lahti, J.M.4
-
3
-
-
0141685928
-
Comparison of even-skipped related gene expression pattern in vertebrates shows an association between expression domain loss and modification of selective constraints on sequences
-
Avaron F., Thaeron-Antono C., Beck C.W., Borday-Birraux V., Geraudie J., Casane D., Laurenti P. Comparison of even-skipped related gene expression pattern in vertebrates shows an association between expression domain loss and modification of selective constraints on sequences. Evolut. Develop. 5:2003;145-156.
-
(2003)
Evolut. Develop.
, vol.5
, pp. 145-156
-
-
Avaron, F.1
Thaeron-Antono, C.2
Beck, C.W.3
Borday-Birraux, V.4
Geraudie, J.5
Casane, D.6
Laurenti, P.7
-
4
-
-
0034831138
-
Segmental duplications: Organization and impact within the current human genome project assembly
-
Bailey J.A., Yavor A.M., Massa H.F., Trask B.J., Eichler E.E. Segmental duplications: organization and impact within the current human genome project assembly. Genome Res. 11:2001;1005-1017.
-
(2001)
Genome Res.
, vol.11
, pp. 1005-1017
-
-
Bailey, J.A.1
Yavor, A.M.2
Massa, H.F.3
Trask, B.J.4
Eichler, E.E.5
-
5
-
-
0037008845
-
Analysis of the phylogenetic distribution of isochores in vertebrates and a test of the thermal stability hypothesis
-
Belle E.M., Smith N., Eyre-Walker A. Analysis of the phylogenetic distribution of isochores in vertebrates and a test of the thermal stability hypothesis. J. Mol. Evol. 55:2002;356-363.
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 356-363
-
-
Belle, E.M.1
Smith, N.2
Eyre-Walker, A.3
-
6
-
-
0034707199
-
The compositional evolution of vertebrates
-
Bernardi G. The compositional evolution of vertebrates. Gene. 259:2000;31-43.
-
(2000)
Gene
, vol.259
, pp. 31-43
-
-
Bernardi, G.1
-
8
-
-
0031029793
-
The major compositional transitions in the vertebrate genome
-
Bernardi G., Hughes S., Mouchiroud D. The major compositional transitions in the vertebrate genome. J. Mol. Evol. 44:1997;S44-S51.
-
(1997)
J. Mol. Evol.
, vol.44
-
-
Bernardi, G.1
Hughes, S.2
Mouchiroud, D.3
-
9
-
-
0032865867
-
Different hydrophobicities of orthologous proteins from Xenopus and human
-
Cruveiller S., Jabbari K., D'Onofrio G., Bernardi G. Different hydrophobicities of orthologous proteins from Xenopus and human. Gene. 238:1999;15-21.
-
(1999)
Gene
, vol.238
, pp. 15-21
-
-
Cruveiller, S.1
Jabbari, K.2
D'Onofrio, G.3
Bernardi, G.4
-
10
-
-
0028247213
-
HOVERGEN: A database of homologous vertebrate genes
-
Duret L., Mouchiroud D., Gouy M. HOVERGEN: a database of homologous vertebrate genes. Nucleic Acids Res. 22:1994;2360-2365.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2360-2365
-
-
Duret, L.1
Mouchiroud, D.2
Gouy, M.3
-
11
-
-
0032750691
-
CAGGG repeats and the pericentromeric duplication of the hominoid genome
-
Eichler E.E., Archidiacono N., Rocchi M. CAGGG repeats and the pericentromeric duplication of the hominoid genome. Genome Res. 9:1999;1048-1058.
-
(1999)
Genome Res.
, vol.9
, pp. 1048-1058
-
-
Eichler, E.E.1
Archidiacono, N.2
Rocchi, M.3
-
12
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force A., Lynch M., Pickett F.B., Amores A., Yan Y.L., Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics. 151(4):1999;1531-1545.
-
(1999)
Genetics
, vol.151
, Issue.4
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
13
-
-
0035179702
-
Pattern and timing of gene duplication in animal genomes
-
Friedman R., Hughes A.L. Pattern and timing of gene duplication in animal genomes. Genome Res. 11:2001;1842-1847.
-
(2001)
Genome Res.
, vol.11
, pp. 1842-1847
-
-
Friedman, R.1
Hughes, A.L.2
-
14
-
-
0022118360
-
ACNUC - A portable retrieval system for nucleic acid sequence databases: Logical and physical designs and usage
-
Gouy M., Gautier C., Attimonelli M., Lanave C., di Paola G. ACNUC - a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. Comput. Appl. Biosci. 1:1985;167-172.
-
(1985)
Comput. Appl. Biosci.
, vol.1
, pp. 167-172
-
-
Gouy, M.1
Gautier, C.2
Attimonelli, M.3
Lanave, C.4
Di Paola, G.5
-
15
-
-
0036141943
-
Testing the parsimony test of genome duplications: A counterexample
-
Gu X., Huang W. Testing the parsimony test of genome duplications: a counterexample. Genome Res. 12:2002;1-2.
-
(2002)
Genome Res.
, vol.12
, pp. 1-2
-
-
Gu, X.1
Huang, W.2
-
16
-
-
0036613509
-
Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
-
Gu X., Wang Y., Gu J. Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat. Genet. 31(2):2002;205-209.
-
(2002)
Nat. Genet.
, vol.31
, Issue.2
, pp. 205-209
-
-
Gu, X.1
Wang, Y.2
Gu, J.3
-
17
-
-
0034018260
-
Molecular structure and evolution of an alpha/non-alpha satellite junction at 16p11
-
Horvath J., Viggiano L., Loftus B., Adams M., Rocchi M., Eichler E. Molecular structure and evolution of an alpha/non-alpha satellite junction at 16p11. Hum. Mol. Genet. 9:2000;113-123.
-
(2000)
Hum. Mol. Genet.
, vol.9
, pp. 113-123
-
-
Horvath, J.1
Viggiano, L.2
Loftus, B.3
Adams, M.4
Rocchi, M.5
Eichler, E.6
-
20
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157(1):1982;105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, Issue.1
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
21
-
-
0028088517
-
Hydrophobicity, expressivity and aromaticity are the major trends of amino acid usage in 999 Escherichia coli chromosome-encoded genes
-
Lobry J.R., Gautier C. Hydrophobicity, expressivity and aromaticity are the major trends of amino acid usage in 999 Escherichia coli chromosome-encoded genes. Nucleic Acids Res. 22:1994;3174-3180.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3174-3180
-
-
Lobry, J.R.1
Gautier, C.2
-
22
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M., Conery J.S. The evolutionary fate and consequences of duplicate genes. Science. 290:2000;1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
23
-
-
0036613237
-
Extensive genomic duplication during early chordate evolution
-
McLysaght A., Hokamp K., Wolfe K.H. Extensive genomic duplication during early chordate evolution. Nat. Genet. 31(2):2002;200-204.
-
(2002)
Nat. Genet.
, vol.31
, Issue.2
, pp. 200-204
-
-
McLysaght, A.1
Hokamp, K.2
Wolfe, K.H.3
-
24
-
-
0032733930
-
Gene and genome duplications in vertebrates: The one-to-four (-to-eight in fish) rule and the evolution of novel gene functions
-
Meyer A., Schartl M. Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr. Opin. Cell Biol. 11:1999;699-704.
-
(1999)
Curr. Opin. Cell Biol.
, vol.11
, pp. 699-704
-
-
Meyer, A.1
Schartl, M.2
-
25
-
-
0028932702
-
Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions
-
Mouchiroud D., Gautier C., Bernardi G. Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions. J. Mol. Evol. 40:1995;107-113.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 107-113
-
-
Mouchiroud, D.1
Gautier, C.2
Bernardi, G.3
-
26
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M., Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 5:1986;418-426.
-
(1986)
Mol. Biol. Evol.
, vol.5
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
28
-
-
0036845822
-
Splitting pairs: The diverging fates of duplicated genes
-
Prince V.E., Pickett F.B. Splitting pairs: the diverging fates of duplicated genes. Nat. Rev., Genet. 11:2002;827-837.
-
(2002)
Nat. Rev., Genet.
, vol.11
, pp. 827-837
-
-
Prince, V.E.1
Pickett, F.B.2
-
29
-
-
0035162594
-
RefSeq and LocusLink: NCBI gene-centered resources
-
Pruitt K.D., Maglott D.R. RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res. 29:2001;137-140.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 137-140
-
-
Pruitt, K.D.1
Maglott, D.R.2
-
30
-
-
0037202372
-
Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds
-
Saccone S., Federico C., Bernardi G. Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds. Gene. 300:2002;169-178.
-
(2002)
Gene
, vol.300
, pp. 169-178
-
-
Saccone, S.1
Federico, C.2
Bernardi, G.3
-
31
-
-
0036245495
-
Segmental duplications and the evolution of the primate genome
-
Samonte R.V., Eichler E.E. Segmental duplications and the evolution of the primate genome. Nat. Rev., Genet. 3:2002;65-72.
-
(2002)
Nat. Rev., Genet.
, vol.3
, pp. 65-72
-
-
Samonte, R.V.1
Eichler, E.E.2
-
32
-
-
0033180387
-
Vertebrate genome evolution: A slow shuffle or a big bang?
-
Smith N.G.C., Knight R., Hurst L.D. Vertebrate genome evolution: a slow shuffle or a big bang? BioEssays. 21:1999;697-703.
-
(1999)
BioEssays
, vol.21
, pp. 697-703
-
-
Smith, N.G.C.1
Knight, R.2
Hurst, L.D.3
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
7844234750
-
Large multi-chromosomal duplications encompass many members of the olfactory receptor gene family in the human genome
-
Trask B.J., Massa H., Brand-Arpon V., Chan K., Friedman C., Nguyen O.T., Eichler E.E., van den Engh G., Rouquier S., Shizuya H.et al. Large multi-chromosomal duplications encompass many members of the olfactory receptor gene family in the human genome. Hum. Mol. Genet. 7:1998;2007-2020.
-
(1998)
Hum. Mol. Genet.
, vol.7
, pp. 2007-2020
-
-
Trask, B.J.1
Massa, H.2
Brand-Arpon, V.3
Chan, K.4
Friedman, C.5
Nguyen, O.T.6
Eichler, E.E.7
Van Den Engh, G.8
Rouquier, S.9
Shizuya, H.10
-
35
-
-
85030947175
-
Genomic distribution of HIV-1 in genomes of infected individuals: Correlation between localization in GC-poor isochores and high viremia are correlated
-
(submitted for publication)
-
Tsyba L., Rynditch A., Boeri E., Jabbari K., Bernardi G. Genomic distribution of HIV-1 in genomes of infected individuals: correlation between localization in GC-poor isochores and high viremia are correlated. FEBS Lett. 2003;. (submitted for publication).
-
(2003)
FEBS Lett.
-
-
Tsyba, L.1
Rynditch, A.2
Boeri, E.3
Jabbari, K.4
Bernardi, G.5
-
36
-
-
0034100201
-
The role of population size, pleiotropy and fitness effects of mutations in the evolution of overlapping gene functions
-
Wagner A. The role of population size, pleiotropy and fitness effects of mutations in the evolution of overlapping gene functions. Genetics. 154(3):2000;1389-1401.
-
(2000)
Genetics
, vol.154
, Issue.3
, pp. 1389-1401
-
-
Wagner, A.1
-
37
-
-
0035344021
-
Yesterday's polyploids and the mystery of diploidization
-
Wolfe K.H. Yesterday's polyploids and the mystery of diploidization. Nat. Rev. Genet. 2:2001;333-341.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 333-341
-
-
Wolfe, K.H.1
-
38
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:1997;555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
|