Molecular evidence of an African Phiomorpha-South American Caviomorpha clade and support for Hystricognathi based on the complete mitochondrial genome of the cane rat (Thryonomys swinderianus)

Molecular Phylogenetics and Evolution

Volumn 18, Issue 1, 2001, Pages 127-135

  Mouchaty, Suzette K ^a   Catzeflis, Francois ^b   Janke, Axel ^a   Arnason, Ulfur ^a  

^a LUND UNIVERSITY   (Sweden)

^b INSTITUT DES SCIENCES DE L EVOLUTION   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CAVIA PORCELLUS; THRYONOMYS SWINDERIANUS;

EID: 0035157068     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.2000.0870     Document Type: Article

References (86)

1. Model of amino acid substitution in protein encoded by mitochondrial DNA
2. Complete sequence of the bovine mitochondrial DNA conserved features of the mammalian mitochondrial genome
3. Comparison between the complete mtDNA sequences of the blue and the fin whale, two species that can hybridize in nature
4. The complete mitochondrial DNA sequence of the harbor seal, Phoca vitulina
5. The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus
6. Pattern and timing of evolutionary divergences among hominoids based on analyses of complete mtDNAs
7. Comparison between the complete mitochondrial DNA sequences of Homo and the common chimpanzee
8. A complete mitochondrial DNA molecule of the white-handed gibbon, Hylobates lar, and comparison among individual mitochondrial genes of all hominoid genera
9. Phylogenetic analyses of mitochondrial DNA suggest a sister group relationship between Xenartha (Edentata) and ferungulates
10. Molecular timing of primate divergences as estimated by two nonprimate calibration points
11. The mitochondrial DNA molecule of the aardvark, Orycteropus after, and the position of the Tubulidentata in the eutherian tree
12. Amino acid sequence data and evolutionary relationships among hystricognaths and other rodents
13. Sequence and gene organization of the mouse mitochondrial DNA
14. Phylogenetic place of guinea pigs: No support of the rodent-polyphyly hypothesis from maximum-likelihood analyses of multiple protein sequences
15. Best-fit maximum-likelihood models for phylogenetic inference: Empirical tests with known phylogenies
16. The guinea-pig is not a rodent
17. Evolutionary trees from DNA sequences: A maximum-likelihood approach
18. Confidence limits on phylogenies: An approach using the bootstrap
19. Toward defining the course of evolution: Minimum change from a specific tree topology
20. Monophyly of the order Rodentia inferred from mitochondrial DNA sequences of the genes for 12S rRNA, 16S rRNA, and tRNA-valine
21. The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: Cryptic signals revealed by comparative analysis between vertebrates
22. Reproductive and chromosomal characters of ctenodactylids as a key to their evolutionary relationships
23. The complete mitochondrial DNA sequence of the rabbit, Oryctolagus cuniculus
24. Statistical tests of models of DNA substitution
25. Is the guinea-pig a rodent?
26. Phylogenetic position of the order Lagomorpha (rabbits, hares and allies)
27. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
28. Continental breakup and the ordinal diversification of birds and mammals
29. A framework for the quantitative study of evolutionary trees
30. Molecular evolution of the nuclear von Willebrand Factor gene in mammals and the phylogeny of rodents
31. Variance of molecular datings, evolution of rodents and the phylogenetic affinities between Ctenodactylidae and Hystricognathi
32. New evidence of hystricognath rodent monophyly from the phylogeny of their pinworms
33. The robustness of two phylogenetic methods: Four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining
34. Rodent phylogeny: New data and old problems
35. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
36. The marsupial mitochondrial genome and the evolution of placental mammals
37. The mitochondrial genome of a monotreme - The platypus (Ornithorhynchus anatinus)
38. Maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
39. Sequence analysis of the complete mitochondrial DNA molecule of the hedgehog, Erinaceus europaeus, and phylogenetic position of the Lipotyphla
40. Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates
41. A molecular timescale for vertebrate evolution
42. The interrelationships of the New and Old World hystricomorph rodents
43. A proposal for a new classification and nomenclature for the Glires (Lagomorpha and Rodentia)
44. What is an hystricomorph?
45. Rodentia and Lagomorpha
46. Phylogenetic analysis of middle ear features in fossils and living rodents
47. The molecular taxonomy and evolution of the guinea pig
48. Phylogenetic assessment of molecular and morphological data for eutherian mammals
49. Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA repeat (Numt) in the nuclear genome
50. Monophyletic or diphyletic origin of Anthropoidea and Hystricognathi: Evidence of the fetal membranes
51. Superordinal and intraordinal affinities of rodents: Developmental evidence from the dentition and placentation
52. Evolutionary relationships among rodents: Comments and conclusions
53. Monophyly or polyphyly of the order Rodentia: Possible conflict between morphological and molecular interpretations
54. The auditory region of Reithroparamys delicatissimus (Mammalia, Rodentia) and its systematic implications
55. Primitive fossil rodent from Inner Mongolia and its implications for mammalian phylogeny
56. The phylogenetic position of the Talpidae within Eutheria based on analysis of complete mitochondrial sequences
57. Higherlevel systematics of rodents (Mammalia, Rodentia): Evidence from the mitochondrial 12S rRNA gene
58. Mammalian evolution: Timing and implications from using the logdeterminant transform for proteins of differing amino acid composition
59. Complete mitochondrial genome of a neotropical fruit bat, Artibeus jamaicensis, and a new hypothesis of the relationship of bats to other eutherian mammals
60. Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: Further evidence of rodent paraphyly
61. Paleo-oceanology and paleobiogeography of the Cretaceous South Atlantic Ocean
62. West African and North American transgressional maxima and the dispersal of benthic organisms
63. Influence of base composition of quantitative estimates of gene evolution
64. The neighbor-joining method: A new method for reconstructing phylogenetic trees
65. Rodent macromolecular systematics
66. Generation time and genomic evolution in primates
67. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
68. Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics
69. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
70. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to humans and apes
71. Possible evolutionary relationships among Eocene and lower Oligocene rodents of Asia, Europe and North America
72. Review and analysis of the radiation of the South American Hystricognathi (Mammalia, Rodentia)
73. Notes on the origin of the domestic guinea pig
74. The evolution of Old World and New World hystricomorphs
75. The relationships, origin and dispersal of the hystricognathous rodents
76. Suborder Hystricognathi
77. Myology of hystricognath rodents: An analysis of form, function, and phylogeny
78. South America's earliest rodent and recognition of a new interval of mammalian evolution
79. The complete mitochondrial DNA sequence of the horse, Equus caballus: Extensive heteroplasmy of the control region
80. The complete mitochondrial DNA sequence of the white rhinoceros, Ceratotherium simum, and comparison with the mtDNA of the Indian rhinoceros, Rhinoceros unicornis
81. Estimating the pattern of nucleotide substitution
82. Among-site rate variation and its impact on phylogenetic analyses