Isolation and characterization of the carbon catabolite-derepressing protein kinase Snf1 from the stress tolerant yeast Torulaspora delbrueckii

Yeast

Volumn 27, Issue 12, 2010, Pages 1061-1069

  Hernández López, María José ^a   Prieto, José Antonio ^a   Randez Gil, Francisca ^a  

^a INSTITUTO DE AGROQUÍMICA Y TECNOLOGÍA DE ALIMENTOS CSIC   (Spain)

Author keywords

Protein kinases; SNF1; Torulaspora delbrueckii; Yeast

Indexed keywords

SERINE; THREONINE;

ARTICLE; CATALYSIS; CELL PROLIFERATION; DNA SEQUENCE; FERMENTATION; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; SACCHAROMYCES CEREVISIAE; STRESS; TORULASPORA; YEAST;

AMINO ACID SEQUENCE; CARBON; CLONING, MOLECULAR; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; PROTEIN-SERINE-THREONINE KINASES; STRESS, PHYSIOLOGICAL; TORULASPORA;

SACCHAROMYCES CEREVISIAE; TORULASPORA DELBRUECKII;

EID: 78649797896     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1810     Document Type: Article

References (54)

1. Alepuz PM, Cunningham KW, Estruch F. 1997. Glucose repression affects ion homeostasis in yeast through the regulation of the stress-activated ENA1 gene. Mol Microbiol 26: 91-98.
2. Almeida MJ, Pais C. 1996. Leavening ability and freeze tolerance of yeasts isolated from traditional corn and rye bread doughs. Appl Environ Microbiol 62: 4401-4404.
3. Altschul SF, Madden TL, Schäffer AA, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 25: 3389-3402.
4. Alves-Araújo C, Almeida MJ, Sousa MJ, et al. 2004. Freeze tolerance of the yeast Torulaspora delbrueckii: cellular and biochemical basis. FEMS Microbiol Lett 240: 7-14.
5. Alves-Araújo C, Pacheco A, Almeida MJ, et al. 2007. Sugar utilization patterns and respiro-fermentative metabolism in the baker's yeast Torulaspora delbrueckii. Microbiology 153: 898-904.
6. Ando A, Nakamura T, Murata Y, et al. 2007. Identification and classification of genes required for tolerance to freeze-thaw stress revealed by genome-wide screening of Saccharomyces cerevisiae deletion strains. FEMS Yeast Res 7: 244-253.
7. Ashrafi K, Lin SS, Manchester JK, et al. 2000. Sip2p and its partner Snf1p kinase affect aging in S. cerevisiae. Genes Dev 14: 1872-1885.
8. Baena-González E, Sheen J. 2008. Convergent energy and stress signaling. Trends Plant Sci 13: 474-482.
9. Baena-González E, Rolland F, Thevelein JM, et al. 2007. A central integrator of transcription networks in plant stress and energy signalling. Nature 448: 938-942.
10. Carlson M, Osmond BC, Botstein D. 1981. Mutants of yeast defective in sucrose utilization. Genetics 98: 25-40.
11. Celenza JL, Carlson M. 1984. Cloning and genetic mapping of SNF1, a gene required for expression of glucose-repressible genes in Saccharomyces cerevisiae. Mol Cell Biol 4: 49-53.
12. Celenza JL, Carlson M. 1986. A yeast gene that is essential for release from glucose repression encodes a protein kinase. Science 233: 1175-1180.
13. Celenza JL, Carlson M. 1989. Mutational analysis of the Saccharomyces cerevisiae SNF1 protein kinase and evidence for functional interaction with the SNF4 protein. Mol Cell Biol 9: 5034-5044.
14. Ciriacy M. 1977. Isolation and characterization of yeast mutants defective in intermediary carbon metabolism and in carbon catabolite derepression. Mol Gen Genet 154: 213-220.
15. Erickson JR, Johnston M. 1993. Genetic and molecular characterization of GAL83: its interaction and similarities with other genes involved in glucose repression in Saccharomyces cerevisiae. Genetics 135: 655-664.
16. Gancedo JM. 1998. Yeast carbon catabolite repression. Microbiol Mol Biol Rev 62: 334-361.
17. Gietz RD, Sugino A. 1988. New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74: 527-534.
18. Goffrini P, Ficarelli A, Donnini C, et al. 1996. FOG1 and FOG2 genes, required for the transcriptional activation of glucose-repressible genes of Kluyveromyces lactis, are homologous to GAL83 and SNF1 of Saccharomyces cerevisiae. Curr Genet 29: 316-326.
19. Goldstein AL, McCusker JH. 1999. Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15: 1541-1553.
20. Hedbacker H, Carlson M. 2008. SNF1/AMPK pathways in yeast. Front Biosci 13: 2408-2420.
21. Hedbacker K, Townley R, Carlson M. 2004. cAMP-dependent protein kinase regulates the subcellular localization of Snf1-Sip1 protein kinase. Mol Cell Biol 24: 1836-1843.
22. Hernández-López MJ, Prieto JA, Randez-Gil F. 2002. Isolation and characterization of the gene URA3 encoding the orotidine-5'-phosphate decarboxylase from Torulaspora delbrueckii. Yeast 19: 1431-1435.
23. Hernández-López MJ, Prieto JA, Randez-Gil F. 2003. Osmotolerance and leavening ability in sweet and frozen sweet dough. Comparative analysis between Torulaspora delbrueckii and Saccharomyces cerevisiae baker's yeast strains. Antonie Van Leeuwenhoek 84: 125-34.
24. Hernández-López MJ, Randez-Gil F, Prieto JA. 2006a. Hog1 mitogen-activated protein kinase plays conserved and distinct roles in the osmotolerant yeast Torulaspora delbrueckii. Eukaryot Cell 5: 1410-1419.
25. Hernández-López MJ, Panadero J, Prieto JA, et al. 2006b. Regulation of salt tolerance by Torulaspora delbrueckii calcineurin target Crz1p. Eukaryot Cell 5: 469-479.
26. Hong SP, Carlson M. 2007. Regulation of Snf1 protein kinase in response to environmental stress. J Biol Chem 282: 16838-16845.
27. Hong SP, Leiper FC, Woods A, et al. 2003. Activation of yeast Snf1 and mammalian AMP-activated protein kinase by upstream kinases. Proc Natl Acad Sci USA 100: 8839-8843.
28. Honigberg SM, Lee RH. 1998. Snf1 kinase connects nutritional pathways controlling meiosis in Saccharomyces cerevisiae. Mol Cell Biol 18: 4548-4555.
29. Huxley C, Green ED, Dunham I. 1990. Rapid assessment of S. cerevisiae mating type by PCR. Trends Genet 6: 236.
30. Ito H, Fukuda Y, Murata K, et al. 1983. Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153: 163-168.
31. Jiang R, Carlson M. 1996. Glucose regulates protein interactions within the yeast SNF1 protein kinase complex. Genes Dev 10: 3105-3115.
32. Jiang R, Carlson M. 1997. The Snf1 protein kinase and its activating subunit, Snf4, interact with distinct domains of the Sip1/Sip2/Gal83 component in the kinase complex. Mol Cell Biol 17: 2099-2106.
33. Krügel H, Fiedler G, Smith C, et al. 1993. Sequence and transcriptional analysis of the nourseothricin acetyltransferase-encoding gene nat1 from Streptomyces noursei. Gene 127: 127-131.
34. Leech A, Nath N, McCartney RR, Schmidt MC. 2003. Isolation of mutations in the catalytic domain of the snf1 kinase that render its activity independent of the snf4 subunit. Eukaryot Cell 2: 265-273.
35. Lowe ED, Noble ME, Skamnaki VT, et al. 1997. The crystal structure of a phosphorylase kinase peptide substrate complex: kinase substrate recognition. EMBO J 16: 6646-6658.
36. Marchler-Bauer A, Anderson JB, Chitsaz F, et al. 2009. CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res 37: D205-210.
37. Niefind K, Guerra B, Pinna LA, et al. 1998. Crystal structure of the catalytic subunit of protein kinase CK2 from Zea mays at 2.1 A resolution. EMBO J 17: 2451-2462.
38. Petter R, Chang YC, Kwon-Chung KJ. 1997. A gene homologous to Saccharomyces cerevisiae SNF1 appears to be essential for the viability of Candida albicans. Infect Immun 65: 4909-4917.
39. Portillo F, Mulet JM, Serrano R. 2005. A role for the non-phosphorylated form of yeast Snf1: tolerance to toxic cations and activation of potassium transport. FEBS Lett 579: 512-516.
40. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY.
41. Sanger F, Nicklen S, Coulson AR. 1977. DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467.
42. Sanz P. 2007. Yeast as a model system to study glucose-mediated signalling and response. Front Biosci 12: 2358-2371.
43. Sanz P, Alms GR, Haystead TAJ, et al. 2000. Regulatory interactions between the Reg1-Glc7 protein phosphatase and the Snf1 protein kinase. Mol Cell Biol 20: 1321-1328.
44. Sherman F, Fink GR, Hicks JB. 1986. Methods in Yeast Genetics. Cold Spring Harbor Laboratory: Cold Spring Harbor, NY.
45. Sigrist CJ, Cerutti L, Hulo N, et al. 2002. PROSITE: a documented database using patterns and profiles as motif descriptors. Brief Bioinform 3: 265-274.
46. Sutherland CM, Hawley SA, McCartney RR, et al. 2003. Elm1p is one of three upstream kinases for the Saccharomyces cerevisiae SNF1 complex. Curr Biol 13: 1299-1305.
47. Thompson-Jaeger S, François J, Gaughran JP, et al. 1991. Deletion of SNF1 affects the nutrient response of yeast and resembles mutations which activate the adenylate cyclase pathway. Genetics 129: 697-706.
48. Turcotte B, Liang XB, Robert F, et al. 2009. Transcriptional regulation of nonfermentable carbon utilization in budding yeast. FEMS Yeast Res 10: 2-13.
49. Usaite R, Jewett MC, Oliveira AP, et al. 2009. Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. Mol Syst Biol 5: 319.
50. Vyas VK, Kuchin S, Berkey CD, et al. 2003. Snf1 kinases with different β-subunit isoforms play distinct roles in regulating haploid invasive growth. Mol Cell Biol 23: 1341-1348.
51. Yang X, Hubbard EJA, Carlson M. 1992. A protein kinase substrate identified by the two-hybrid system. Science 257: 680-682.
52. Yang X, Jiang R, Carlson M. 1994. A family of proteins containing a conserved domain that mediates interaction with the yeast SNF1 protein kinase complex. EMBO J 13: 5878-5886.
53. Ye T, Elbing K, Hohmann S. 2008. The pathway by which the yeast protein kinase Snf1p controls acquisition of sodium tolerance is different from that mediating glucose regulation. Microbiology 154: 2814-2826.
54. Zimmermann FK, Scheel I. 1977. Mutants of Saccharomyces cerevisiae resistant to carbon catabolite repression. Mol Gen Genet 154: 75-82.