-
1
-
-
78650814232
-
Cancer Trends Progress Report - 2007 Update
-
NIH, DHHS
-
NIH, DHHS Cancer Trends Progress Report - 2007 Update. Bethesda, MD 2007, NIH, DHHS., http://progressreport.cancer.gov/
-
(2007)
Bethesda, MD
-
-
-
2
-
-
1342268525
-
American Society of Clinical Oncology treatment of unresectable non-small-cell lung cancer guideline: update 2003
-
10.1200/JCO.2004.09.053, 14691125
-
Pfister DG, Johnson DH, Azzoli CG, Sause W, Smith TJ, Baker S, Olak J, Stover D, Strawn JR, Turrisi AT, Somerfield MR. American Society of Clinical Oncology treatment of unresectable non-small-cell lung cancer guideline: update 2003. J Clin Oncol 2004, 22(2):330-353. 10.1200/JCO.2004.09.053, 14691125.
-
(2004)
J Clin Oncol
, vol.22
, Issue.2
, pp. 330-353
-
-
Pfister, D.G.1
Johnson, D.H.2
Azzoli, C.G.3
Sause, W.4
Smith, T.J.5
Baker, S.6
Olak, J.7
Stover, D.8
Strawn, J.R.9
Turrisi, A.T.10
Somerfield, M.R.11
-
3
-
-
75749097259
-
Targeted therapies for non-small cell lung cancer
-
10.1016/j.lungcan.2009.10.012, 19914732
-
Dempke WCM, Suto T, Reck M. Targeted therapies for non-small cell lung cancer. Lung Cancer 2009, 67(3):257-274. 10.1016/j.lungcan.2009.10.012, 19914732.
-
(2009)
Lung Cancer
, vol.67
, Issue.3
, pp. 257-274
-
-
Dempke, W.C.M.1
Suto, T.2
Reck, M.3
-
5
-
-
58149186087
-
Establishment of patient-derived non-small cell lung cancer xenografts as models for the identification of predictive biomarkers
-
10.1158/1078-0432.CCR-08-0138, 18927285
-
Fichtner I, Rol J, Soong R, Homann J, Hammer S, Sommer A, Becker M, Merk J. Establishment of patient-derived non-small cell lung cancer xenografts as models for the identification of predictive biomarkers. Clin Cancer Res 2008, 14(20):6456-6468. 10.1158/1078-0432.CCR-08-0138, 18927285.
-
(2008)
Clin Cancer Res
, vol.14
, Issue.20
, pp. 6456-6468
-
-
Fichtner, I.1
Rol, J.2
Soong, R.3
Homann, J.4
Hammer, S.5
Sommer, A.6
Becker, M.7
Merk, J.8
-
6
-
-
77649122679
-
Comparative Profiling of the Novel Epothilone, Sagopilone, in Xenografts Derived from Primary Non-Small Cell Lung Cancer
-
10.1158/1078-0432.CCR-09-2455, 20179216
-
Hammer S, Sommer A, Fichtner I, Becker M, Rol J, Merk J, Klar U, Homann J. Comparative Profiling of the Novel Epothilone, Sagopilone, in Xenografts Derived from Primary Non-Small Cell Lung Cancer. Clin Cancer Res 2010, 16(5):1452-1465. 10.1158/1078-0432.CCR-09-2455, 20179216.
-
(2010)
Clin Cancer Res
, vol.16
, Issue.5
, pp. 1452-1465
-
-
Hammer, S.1
Sommer, A.2
Fichtner, I.3
Becker, M.4
Rol, J.5
Merk, J.6
Klar, U.7
Homann, J.8
-
7
-
-
34247274716
-
Chromosomal aberrations and gene expression profiles in non-small cell lung cancer
-
10.1016/j.lungcan.2006.12.010, 17258348
-
Dehan E, Ben-Dor A, Liao W, Lipson D, Frimer H, Rienstein S, Simansky D, Krupsky M, Yaron P, Friedman E, Rechavi G, Perlman M, Aviram-Goldring A, Izraeli S, Bittner M, Yakhini Z, Kaminski N. Chromosomal aberrations and gene expression profiles in non-small cell lung cancer. Lung Cancer 2007, 56(2):175-184. 10.1016/j.lungcan.2006.12.010, 17258348.
-
(2007)
Lung Cancer
, vol.56
, Issue.2
, pp. 175-184
-
-
Dehan, E.1
Ben-Dor, A.2
Liao, W.3
Lipson, D.4
Frimer, H.5
Rienstein, S.6
Simansky, D.7
Krupsky, M.8
Yaron, P.9
Friedman, E.10
Rechavi, G.11
Perlman, M.12
Aviram-Goldring, A.13
Izraeli, S.14
Bittner, M.15
Yakhini, Z.16
Kaminski, N.17
-
8
-
-
63349100797
-
Coordinated activation of candidate proto-oncogenes and cancer testes antigens via promoter demethylation in head and neck cancer and lung cancer
-
10.1371/journal.pone.0004961, 2654921, 19305507
-
Smith IM, Glazer CA, Mithani SK, Ochs MF, Sun W, Bhan S, Vostrov A, Abdullaev Z, Lobanenkov V, Gray A, Liu C, Chang SS, Ostrow KL, Westra WH, Begum S, Dhara M, Califano J. Coordinated activation of candidate proto-oncogenes and cancer testes antigens via promoter demethylation in head and neck cancer and lung cancer. PLoS One 2009, 4(3):e4961. 10.1371/journal.pone.0004961, 2654921, 19305507.
-
(2009)
PLoS One
, vol.4
, Issue.3
-
-
Smith, I.M.1
Glazer, C.A.2
Mithani, S.K.3
Ochs, M.F.4
Sun, W.5
Bhan, S.6
Vostrov, A.7
Abdullaev, Z.8
Lobanenkov, V.9
Gray, A.10
Liu, C.11
Chang, S.S.12
Ostrow, K.L.13
Westra, W.H.14
Begum, S.15
Dhara, M.16
Califano, J.17
-
9
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
10.1038/nature08909, 20110989
-
Nilsen TW, Graveley BR. Expansion of the eukaryotic proteome by alternative splicing. Nature 2010, 463:457-463. 10.1038/nature08909, 20110989.
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
10
-
-
18344364099
-
Understanding alternative splicing: towards a cellular code
-
10.1038/nrm1645, 15956978
-
Matlin AJ, Clark F, Smith CWJ. Understanding alternative splicing: towards a cellular code. Nat Rev Mol Cell Biol 2005, 6(5):386-398. 10.1038/nrm1645, 15956978.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, Issue.5
, pp. 386-398
-
-
Matlin, A.J.1
Clark, F.2
Smith, C.W.J.3
-
11
-
-
0347623371
-
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
-
10.1126/science.1090100, 14684825
-
Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 2003, 302(5653):2141-2144. 10.1126/science.1090100, 14684825.
-
(2003)
Science
, vol.302
, Issue.5653
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
Armour, C.D.6
Santos, R.7
Schadt, E.E.8
Stoughton, R.9
Shoemaker, D.D.10
-
12
-
-
12144287461
-
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
-
10.1101/gr.2094104, 353210, 14993201
-
Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, Cawley S, Drenkow J, Piccolboni A, Bekiranov S, Helt G, Tammana H, Gingeras TR. Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res 2004, 14(3):331-342. 10.1101/gr.2094104, 353210, 14993201.
-
(2004)
Genome Res
, vol.14
, Issue.3
, pp. 331-342
-
-
Kampa, D.1
Cheng, J.2
Kapranov, P.3
Yamanaka, M.4
Brubaker, S.5
Cawley, S.6
Drenkow, J.7
Piccolboni, A.8
Bekiranov, S.9
Helt, G.10
Tammana, H.11
Gingeras, T.R.12
-
13
-
-
33645833000
-
Unbalanced alternative splicing and its significance in cancer
-
10.1002/bies.20390, 16547952
-
Venables JP. Unbalanced alternative splicing and its significance in cancer. Bioessays 2006, 28(4):378-386. 10.1002/bies.20390, 16547952.
-
(2006)
Bioessays
, vol.28
, Issue.4
, pp. 378-386
-
-
Venables, J.P.1
-
14
-
-
33947223157
-
Serine-arginine protein kinase 1 overexpression is associated with tumorigenic imbalance in mitogen-activated protein kinase pathways in breast, colonic, and pancreatic carcinomas
-
10.1158/0008-5472.CAN-06-2969, 17332336
-
Hayes GM, Carrigan PE, Miller LJ. Serine-arginine protein kinase 1 overexpression is associated with tumorigenic imbalance in mitogen-activated protein kinase pathways in breast, colonic, and pancreatic carcinomas. Cancer Res 2007, 67(5):2072-2080. 10.1158/0008-5472.CAN-06-2969, 17332336.
-
(2007)
Cancer Res
, vol.67
, Issue.5
, pp. 2072-2080
-
-
Hayes, G.M.1
Carrigan, P.E.2
Miller, L.J.3
-
15
-
-
25844491145
-
Interplay between SRPK and Clk/Sty kinases in phosphorylation of the splicing factor ASF/SF2 is regulated by a docking motif in ASF/SF2
-
10.1016/j.molcel.2005.08.025, 16209947
-
Ngo JCK, Chakrabarti S, Ding JH, Velazquez-Dones A, Nolen B, Aubol BE, Adams JA, Fu XD, Ghosh G. Interplay between SRPK and Clk/Sty kinases in phosphorylation of the splicing factor ASF/SF2 is regulated by a docking motif in ASF/SF2. Mol Cell 2005, 20:77-89. 10.1016/j.molcel.2005.08.025, 16209947.
-
(2005)
Mol Cell
, vol.20
, pp. 77-89
-
-
Ngo, J.C.K.1
Chakrabarti, S.2
Ding, J.H.3
Velazquez-Dones, A.4
Nolen, B.5
Aubol, B.E.6
Adams, J.A.7
Fu, X.D.8
Ghosh, G.9
-
16
-
-
33847630730
-
The gene encoding the splicing factor SF2/ASF is a proto-oncogene
-
10.1038/nsmb1209, 17310252
-
Karni R, de Stanchina E, Lowe SW, Sinha R, Mu D, Krainer AR. The gene encoding the splicing factor SF2/ASF is a proto-oncogene. Nat Struct Mol Biol 2007, 14(3):185-193. 10.1038/nsmb1209, 17310252.
-
(2007)
Nat Struct Mol Biol
, vol.14
, Issue.3
, pp. 185-193
-
-
Karni, R.1
de Stanchina, E.2
Lowe, S.W.3
Sinha, R.4
Mu, D.5
Krainer, A.R.6
-
17
-
-
37349089805
-
Insights into the connection between cancer and alternative splicing
-
10.1016/j.tig.2007.10.001, 18054115
-
Kim E, Goren A, Ast G. Insights into the connection between cancer and alternative splicing. Trends Genet 2008, 24:7-10. 10.1016/j.tig.2007.10.001, 18054115.
-
(2008)
Trends Genet
, vol.24
, pp. 7-10
-
-
Kim, E.1
Goren, A.2
Ast, G.3
-
18
-
-
34547205013
-
Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1
-
10.1016/j.molcel.2007.06.016, 1940037, 17679092
-
Spellman R, Llorian M, Smith CWJ. Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1. Mol Cell 2007, 27(3):420-434. 10.1016/j.molcel.2007.06.016, 1940037, 17679092.
-
(2007)
Mol Cell
, vol.27
, Issue.3
, pp. 420-434
-
-
Spellman, R.1
Llorian, M.2
Smith, C.W.J.3
-
19
-
-
74549123779
-
HnRNP L-mediated regulation of mammalian alternative splicing by interference with splice site recognition
-
10.4161/rna.7.1.10402, 19946215
-
Heiner M, Hui J, Schreiner S, Hung LH, Bindereif A. HnRNP L-mediated regulation of mammalian alternative splicing by interference with splice site recognition. RNA Biol 2010, 7:56-64. 10.4161/rna.7.1.10402, 19946215.
-
(2010)
RNA Biol
, vol.7
, pp. 56-64
-
-
Heiner, M.1
Hui, J.2
Schreiner, S.3
Hung, L.H.4
Bindereif, A.5
-
20
-
-
4644299291
-
Alternative splicing of Bcl-2-related genes: functional consequences and potential therapeutic applications
-
10.1007/s00018-004-4001-7, 15338051
-
Akgul C, Moulding DA, Edwards SW. Alternative splicing of Bcl-2-related genes: functional consequences and potential therapeutic applications. Cell Mol Life Sci 2004, 61(17):2189-2199. 10.1007/s00018-004-4001-7, 15338051.
-
(2004)
Cell Mol Life Sci
, vol.61
, Issue.17
, pp. 2189-2199
-
-
Akgul, C.1
Moulding, D.A.2
Edwards, S.W.3
-
21
-
-
0037227965
-
CD44: from adhesion molecules to signalling regulators
-
10.1038/nrm1004, 12511867
-
Ponta H, Sherman L, Herrlich PA. CD44: from adhesion molecules to signalling regulators. Nat Rev Mol Cell Biol 2003, 4:33-45. 10.1038/nrm1004, 12511867.
-
(2003)
Nat Rev Mol Cell Biol
, vol.4
, pp. 33-45
-
-
Ponta, H.1
Sherman, L.2
Herrlich, P.A.3
-
22
-
-
73949097022
-
A CD44v6 peptide reveals a role of CD44 in VEGFR-2 signaling and angiogenesis
-
10.1182/blood-2009-04-219204, 19773544
-
Tremmel M, Matzke A, Albrecht I, Laib AM, Olaku V, Ballmer-Hofer K, Christofori G, Héroult M, Augustin HG, Ponta H, Orian-Rousseau V. A CD44v6 peptide reveals a role of CD44 in VEGFR-2 signaling and angiogenesis. Blood 2009, 114(25):5236-5244. 10.1182/blood-2009-04-219204, 19773544.
-
(2009)
Blood
, vol.114
, Issue.25
, pp. 5236-5244
-
-
Tremmel, M.1
Matzke, A.2
Albrecht, I.3
Laib, A.M.4
Olaku, V.5
Ballmer-Hofer, K.6
Christofori, G.7
Héroult, M.8
Augustin, H.G.9
Ponta, H.10
Orian-Rousseau, V.11
-
23
-
-
50049134725
-
Phase I trial with the CD44v6-targeting immunoconjugate bivatuzumab mertansine in head and neck squamous cell carcinoma
-
10.1016/j.oraloncology.2007.10.009, 18203652
-
Riechelmann H, Sauter A, Golze W, Hanft G, Schroen C, Hoermann K, Erhardt T, Gronau S. Phase I trial with the CD44v6-targeting immunoconjugate bivatuzumab mertansine in head and neck squamous cell carcinoma. Oral Oncol 2008, 44(9):823-829. 10.1016/j.oraloncology.2007.10.009, 18203652.
-
(2008)
Oral Oncol
, vol.44
, Issue.9
, pp. 823-829
-
-
Riechelmann, H.1
Sauter, A.2
Golze, W.3
Hanft, G.4
Schroen, C.5
Hoermann, K.6
Erhardt, T.7
Gronau, S.8
-
24
-
-
0028116528
-
The fibronectin isoform containing the ED-B oncofetal domain: a marker of angiogenesis
-
10.1002/ijc.2910590507, 7525495
-
Castellani P, Viale G, Dorcaratto A, Nicolo G, Kaczmarek J, Querze G, Zardi L. The fibronectin isoform containing the ED-B oncofetal domain: a marker of angiogenesis. Int J Cancer 1994, 59(5):612-618. 10.1002/ijc.2910590507, 7525495.
-
(1994)
Int J Cancer
, vol.59
, Issue.5
, pp. 612-618
-
-
Castellani, P.1
Viale, G.2
Dorcaratto, A.3
Nicolo, G.4
Kaczmarek, J.5
Querze, G.6
Zardi, L.7
-
25
-
-
26444432323
-
Radioimmunotherapy of solid tumors by targeting extra domain B fibronectin: identification of the best-suited radioimmunoconjugate
-
10.1158/1078-0432.CCR-1004-0015, 16203802
-
Berndor D, Borkowski S, Sieger S, Rother A, Friebe M, Viti F, Hilger CS, Cyr JE, Dinkelborg LM. Radioimmunotherapy of solid tumors by targeting extra domain B fibronectin: identification of the best-suited radioimmunoconjugate. Clin Cancer Res 2005, 11(19 Suppl):7053s-7063s. 10.1158/1078-0432.CCR-1004-0015, 16203802.
-
(2005)
Clin Cancer Res
, vol.11
, Issue.19 SUPPL
-
-
Berndor, D.1
Borkowski, S.2
Sieger, S.3
Rother, A.4
Friebe, M.5
Viti, F.6
Hilger, C.S.7
Cyr, J.E.8
Dinkelborg, L.M.9
-
26
-
-
0034614637
-
The hallmarks of cancer
-
10.1016/S0092-8674(00)81683-9, 10647931
-
Hanahan D, Weinberg RA. The hallmarks of cancer. Cell 2000, 100:57-70. 10.1016/S0092-8674(00)81683-9, 10647931.
-
(2000)
Cell
, vol.100
, pp. 57-70
-
-
Hanahan, D.1
Weinberg, R.A.2
-
27
-
-
33846467191
-
Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
-
10.1186/1471-2164-7-325, 1769375, 17192196
-
Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array. BMC Genomics 2006, 7:325. 10.1186/1471-2164-7-325, 1769375, 17192196.
-
(2006)
BMC Genomics
, vol.7
, pp. 325
-
-
Gardina, P.J.1
Clark, T.A.2
Shimada, B.3
Staples, M.K.4
Yang, Q.5
Veitch, J.6
Schweitzer, A.7
Awad, T.8
Sugnet, C.9
Dee, S.10
Davies, C.11
Williams, A.12
Turpaz, Y.13
-
28
-
-
76149130971
-
Alternative splicing: global insights
-
10.1111/j.1742-4658.2009.07521.x, 20082635
-
Hallegger M, Llorian M, Smith CWJ. Alternative splicing: global insights. FEBS J 2010, 277(4):856-866. 10.1111/j.1742-4658.2009.07521.x, 20082635.
-
(2010)
FEBS J
, vol.277
, Issue.4
, pp. 856-866
-
-
Hallegger, M.1
Llorian, M.2
Smith, C.W.J.3
-
29
-
-
34547632484
-
Discovery of tissue-specific exons using comprehensive human exon microarrays
-
10.1186/gb-2007-8-4-r64, 1896007, 17456239
-
Clark TA, Schweitzer AC, Chen TX, Staples MK, Lu G, Wang H, Williams A, Blume JE. Discovery of tissue-specific exons using comprehensive human exon microarrays. Genome Biol 2007, 8(4):R64. 10.1186/gb-2007-8-4-r64, 1896007, 17456239.
-
(2007)
Genome Biol
, vol.8
, Issue.4
-
-
Clark, T.A.1
Schweitzer, A.C.2
Chen, T.X.3
Staples, M.K.4
Lu, G.5
Wang, H.6
Williams, A.7
Blume, J.E.8
-
30
-
-
58849106627
-
Identification of common genetic variants that account for transcript isoform variation between human populations
-
10.1007/s00439-008-0601-x, 2665168, 19052777
-
Zhang W, Duan S, Bleibel WK, Wisel SA, Huang RS, Wu X, He L, Clark TA, Chen TX, Schweitzer AC, Blume JE, Dolan ME, Cox NJ. Identification of common genetic variants that account for transcript isoform variation between human populations. Hum Genet 2009, 125:81-93. 10.1007/s00439-008-0601-x, 2665168, 19052777.
-
(2009)
Hum Genet
, vol.125
, pp. 81-93
-
-
Zhang, W.1
Duan, S.2
Bleibel, W.K.3
Wisel, S.A.4
Huang, R.S.5
Wu, X.6
He, L.7
Clark, T.A.8
Chen, T.X.9
Schweitzer, A.C.10
Blume, J.E.11
Dolan, M.E.12
Cox, N.J.13
-
31
-
-
65549120436
-
Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array
-
10.1186/1471-2164-10-126, 2678155, 19320972
-
Hang X, Li P, Li Z, Qu W, Yu Y, Li H, Shen Z, Zheng H, Gao Y, Wu Y, Deng M, Sun Z, Zhang C. Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array. BMC Genomics 2009, 10:126. 10.1186/1471-2164-10-126, 2678155, 19320972.
-
(2009)
BMC Genomics
, vol.10
, pp. 126
-
-
Hang, X.1
Li, P.2
Li, Z.3
Qu, W.4
Yu, Y.5
Li, H.6
Shen, Z.7
Zheng, H.8
Gao, Y.9
Wu, Y.10
Deng, M.11
Sun, Z.12
Zhang, C.13
-
32
-
-
47849097478
-
Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis
-
10.1074/mcp.M700590-MCP200, 18353764
-
Thorsen K, Sørensen KD, Brems-Eskildsen AS, Modin C, Gaustadnes M, Hein AMK, Kruhøer M, Laurberg S, Borre M, Wang K, Brunak S, Krainer AR, Tørring N, Dyrskjøt L, Andersen CL, Orntoft TF. Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis. Mol Cell Proteomics 2008, 7(7):1214-1224. 10.1074/mcp.M700590-MCP200, 18353764.
-
(2008)
Mol Cell Proteomics
, vol.7
, Issue.7
, pp. 1214-1224
-
-
Thorsen, K.1
Sørensen, K.D.2
Brems-Eskildsen, A.S.3
Modin, C.4
Gaustadnes, M.5
Hein, A.M.K.6
Kruhøer, M.7
Laurberg, S.8
Borre, M.9
Wang, K.10
Brunak, S.11
Krainer, A.R.12
Tørring, N.13
Dyrskjøt, L.14
Andersen, C.L.15
Orntoft, T.F.16
-
33
-
-
73449118582
-
Exon array analysis of head and neck cancers identifies a hypoxia related splice variant of LAMA3 Associated with a poor prognosis
-
10.1371/journal.pcbi.1000571, 2773424, 19936049
-
Möller-Levet CS, Betts GNJ, Harris AL, Homer JJ, West CML, Miller CJ. Exon array analysis of head and neck cancers identifies a hypoxia related splice variant of LAMA3 Associated with a poor prognosis. PLoS Comput Biol 2009, 5(11):e1000571. 10.1371/journal.pcbi.1000571, 2773424, 19936049.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.11
-
-
Möller-Levet, C.S.1
Betts, G.N.J.2
Harris, A.L.3
Homer, J.J.4
West, C.M.L.5
Miller, C.J.6
-
34
-
-
56649083778
-
Whole genome exon arrays identify differential expression of alternatively spliced, cancer-related genes in lung cancer
-
10.1093/nar/gkn697, 2582617, 18927117
-
Xi L, Feber A, Gupta V, Wu M, Bergemann AD, Landreneau RJ, Litle VR, Pennathur A, Luketich JD, Godfrey TE. Whole genome exon arrays identify differential expression of alternatively spliced, cancer-related genes in lung cancer. Nucleic Acids Res 2008, 36(20):6535-6547. 10.1093/nar/gkn697, 2582617, 18927117.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.20
, pp. 6535-6547
-
-
Xi, L.1
Feber, A.2
Gupta, V.3
Wu, M.4
Bergemann, A.D.5
Landreneau, R.J.6
Litle, V.R.7
Pennathur, A.8
Luketich, J.D.9
Godfrey, T.E.10
-
35
-
-
70349510460
-
Exon array profiling detects EML4-ALK fusion in breast, colorectal, and non-small cell lung cancers
-
10.1158/1541-7786.MCR-08-0522, 19737969
-
Lin E, Li L, Guan Y, Soriano R, Rivers CS, Mohan S, Pandita A, Tang J, Modrusan Z. Exon array profiling detects EML4-ALK fusion in breast, colorectal, and non-small cell lung cancers. Mol Cancer Res 2009, 7(9):1466-1476. 10.1158/1541-7786.MCR-08-0522, 19737969.
-
(2009)
Mol Cancer Res
, vol.7
, Issue.9
, pp. 1466-1476
-
-
Lin, E.1
Li, L.2
Guan, Y.3
Soriano, R.4
Rivers, C.S.5
Mohan, S.6
Pandita, A.7
Tang, J.8
Modrusan, Z.9
-
36
-
-
58849120190
-
Identifying and Validating Alternative Splicing Events
-
Affymetrix
-
Affymetrix Identifying and Validating Alternative Splicing Events. 2006, Affymetrix., http://www.affymetrix.com/support/technical/technotes/id_altsplicingevents_technote.pdf
-
(2006)
-
-
-
37
-
-
34247644400
-
High correspondence between Affymetrix exon and standard expression arrays
-
10.2144/000112315, 17373482
-
Okoniewski MJ, Hey Y, Pepper SD, Miller CJ. High correspondence between Affymetrix exon and standard expression arrays. Biotechniques 2007, 42(2):181-185. 10.2144/000112315, 17373482.
-
(2007)
Biotechniques
, vol.42
, Issue.2
, pp. 181-185
-
-
Okoniewski, M.J.1
Hey, Y.2
Pepper, S.D.3
Miller, C.J.4
-
38
-
-
40149087633
-
Exon Array Background Correction
-
Affymetrix
-
Affymetrix Exon Array Background Correction. 2005, Affymetrix., http://www.affymetrix.com/support/technical/whitepapers/exon_background_correction_whitepaper.pdf
-
(2005)
-
-
-
39
-
-
34548853750
-
Exon arrays provide accurate assessments of gene expression
-
10.1186/gb-2007-8-5-r82, 1929160, 17504534
-
Kapur K, Xing Y, Ouyang Z, Wong WH. Exon arrays provide accurate assessments of gene expression. Genome Biol 2007, 8(5):R82. 10.1186/gb-2007-8-5-r82, 1929160, 17504534.
-
(2007)
Genome Biol
, vol.8
, Issue.5
-
-
Kapur, K.1
Xing, Y.2
Ouyang, Z.3
Wong, W.H.4
-
40
-
-
58049209790
-
Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays
-
10.1093/bioinformatics/btn570, 18977779
-
Furusawa C, Ono N, Suzuki S, Agata T, Shimizu H, Yomo T. Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays. Bioinformatics 2009, 25:36-41. 10.1093/bioinformatics/btn570, 18977779.
-
(2009)
Bioinformatics
, vol.25
, pp. 36-41
-
-
Furusawa, C.1
Ono, N.2
Suzuki, S.3
Agata, T.4
Shimizu, H.5
Yomo, T.6
-
41
-
-
58149307490
-
Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays
-
10.1186/1471-2164-9-571, 2612032, 19040723
-
Bea CD, Cordero F, Calogero RA. Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays. BMC Genomics 2008, 9:571. 10.1186/1471-2164-9-571, 2612032, 19040723.
-
(2008)
BMC Genomics
, vol.9
, pp. 571
-
-
Bea, C.D.1
Cordero, F.2
Calogero, R.A.3
-
42
-
-
34548347240
-
Gene Signal Estimates from Exon Arrays
-
Affymetrix
-
Affymetrix Gene Signal Estimates from Exon Arrays. 2005, Affymetrix., http://www.affymetrix.com/support/technical/whitepapers/exon_gene_signal_estimate_whitepaper.pdf
-
(2005)
-
-
-
43
-
-
34250756005
-
Probe selection and expression index computation of Affymetrix Exon Arrays
-
10.1371/journal.pone.0000088, 1762343, 17183719
-
Xing Y, Kapur K, Wong WH. Probe selection and expression index computation of Affymetrix Exon Arrays. PLoS ONE 2006, 1:e88. 10.1371/journal.pone.0000088, 1762343, 17183719.
-
(2006)
PLoS ONE
, vol.1
-
-
Xing, Y.1
Kapur, K.2
Wong, W.H.3
-
44
-
-
48149096726
-
MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays
-
10.1261/rna.1070208, 2491471, 18566192
-
Xing Y, Stoilov P, Kapur K, Han A, Jiang H, Shen S, Black DL, Wong WH. MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. RNA 2008, 14(8):1470-1479. 10.1261/rna.1070208, 2491471, 18566192.
-
(2008)
RNA
, vol.14
, Issue.8
, pp. 1470-1479
-
-
Xing, Y.1
Stoilov, P.2
Kapur, K.3
Han, A.4
Jiang, H.5
Shen, S.6
Black, D.L.7
Wong, W.H.8
-
45
-
-
62249205133
-
Identifying differential exon splicing using linear models and correlation coecients
-
10.1186/1471-2105-10-26, 2636774, 19154578
-
Shah SH, Pallas JA. Identifying differential exon splicing using linear models and correlation coecients. BMC Bioinformatics 2009, 10:26. 10.1186/1471-2105-10-26, 2636774, 19154578.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 26
-
-
Shah, S.H.1
Pallas, J.A.2
-
46
-
-
38549116202
-
X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis
-
Database, 2238884, 17932061
-
Yates T, Okoniewski MJ, Miller CJ. X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis. Nucleic Acids Res 2008, (36 Database):D780-D786. 2238884, 17932061.
-
(2008)
Nucleic Acids Res
, Issue.36
-
-
Yates, T.1
Okoniewski, M.J.2
Miller, C.J.3
-
47
-
-
34548824879
-
An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
-
10.1186/gb-2007-8-5-r79, 1929135, 17498294
-
Okoniewski MJ, Yates T, Dibben S, Miller CJ. An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data. Genome Biol 2007, 8(5):R79. 10.1186/gb-2007-8-5-r79, 1929135, 17498294.
-
(2007)
Genome Biol
, vol.8
, Issue.5
-
-
Okoniewski, M.J.1
Yates, T.2
Dibben, S.3
Miller, C.J.4
-
48
-
-
40149106038
-
Comprehensive analysis of Affymetrix exon arrays using BioConductor
-
10.1371/journal.pcbi.0040006, 2323405, 18463711
-
Okoniewski MJ, Miller CJ. Comprehensive analysis of Affymetrix exon arrays using BioConductor. PLoS Comput Biol 2008, 4(2):e6. 10.1371/journal.pcbi.0040006, 2323405, 18463711.
-
(2008)
PLoS Comput Biol
, vol.4
, Issue.2
-
-
Okoniewski, M.J.1
Miller, C.J.2
-
49
-
-
48149087463
-
Alternative Transcript Analysis Methods for Exon Arrays
-
Affymetrix
-
Affymetrix Alternative Transcript Analysis Methods for Exon Arrays. 2005, Affymetrix., http://www.affymetrix.com/support/technical/whitepapers/exon_alt_transcript_analysis_whitepaper.pdf
-
(2005)
-
-
-
50
-
-
24944555175
-
RepeatMasker Open-3.0
-
Smit AFA, G P, Hubley R. RepeatMasker Open-3.0. 1996, http://www.repeatmasker.org/
-
(1996)
-
-
Smit, A.F.A.1
G, P.2
Hubley, R.3
-
51
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000, 132:365-386.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
52
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
Vandesompele J, Preter KD, Pattyn F, Poppe B, Roy NV, Paepe AD, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3(7):research0034.1-0034.11.
-
(2002)
Genome Biol
, vol.3
, Issue.7
-
-
Vandesompele, J.1
Preter, K.D.2
Pattyn, F.3
Poppe, B.4
Roy, N.V.5
Paepe, A.D.6
Speleman, F.7
-
53
-
-
33748198211
-
Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer
-
10.1186/1471-2407-6-200, 1557528, 16872493
-
Saviozzi S, Cordero F, Iacono ML, Novello S, Scagliotti GV, Calogero RA. Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer. BMC Cancer 2006, 6:200. 10.1186/1471-2407-6-200, 1557528, 16872493.
-
(2006)
BMC Cancer
, vol.6
, pp. 200
-
-
Saviozzi, S.1
Cordero, F.2
Iacono, M.L.3
Novello, S.4
Scagliotti, G.V.5
Calogero, R.A.6
-
54
-
-
0036947892
-
Robust estimators for expression analysis
-
10.1093/bioinformatics/18.12.1585, 12490442
-
Hubbell E, Liu WM, Mei R. Robust estimators for expression analysis. Bioinformatics 2002, 18(12):1585-1592. 10.1093/bioinformatics/18.12.1585, 12490442.
-
(2002)
Bioinformatics
, vol.18
, Issue.12
, pp. 1585-1592
-
-
Hubbell, E.1
Liu, W.M.2
Mei, R.3
-
55
-
-
67349097457
-
Cancer-associated regulation of alternative splicing
-
10.1038/nsmb.1608, 19448617
-
Venables JP, Klinck R, Koh C, Gervais-Bird J, Bramard A, Inkel L, Durand M, Couture S, Froehlich U, Lapointe E, Lucier JF, Thibault P, Rancourt C, Tremblay K, Prinos P, Chabot B, Elela SA. Cancer-associated regulation of alternative splicing. Nat Struct Mol Biol 2009, 16(6):670-676. 10.1038/nsmb.1608, 19448617.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.6
, pp. 670-676
-
-
Venables, J.P.1
Klinck, R.2
Koh, C.3
Gervais-Bird, J.4
Bramard, A.5
Inkel, L.6
Durand, M.7
Couture, S.8
Froehlich, U.9
Lapointe, E.10
Lucier, J.F.11
Thibault, P.12
Rancourt, C.13
Tremblay, K.14
Prinos, P.15
Chabot, B.16
Elela, S.A.17
-
56
-
-
32044467372
-
Fox-2 mediates epithelial cell-specific fibroblast growth factor receptor 2 exon choice
-
10.1128/MCB.26.4.1209-1222.2006, 1367178, 16449636
-
Baraniak AP, Chen JR, Garcia-Blanco MA. Fox-2 mediates epithelial cell-specific fibroblast growth factor receptor 2 exon choice. Mol Cell Biol 2006, 26(4):1209-1222. 10.1128/MCB.26.4.1209-1222.2006, 1367178, 16449636.
-
(2006)
Mol Cell Biol
, vol.26
, Issue.4
, pp. 1209-1222
-
-
Baraniak, A.P.1
Chen, J.R.2
Garcia-Blanco, M.A.3
-
57
-
-
17544367787
-
Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities
-
10.1093/nar/gki338, 1075922, 15824060
-
Nakahata S, Kawamoto S. Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities. Nucleic Acids Res 2005, 33(7):2078-2089. 10.1093/nar/gki338, 1075922, 15824060.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.7
, pp. 2078-2089
-
-
Nakahata, S.1
Kawamoto, S.2
-
58
-
-
76249100558
-
Exon-Based Clustering of Murine Breast Tumor Transcriptomes Reveals Alternative Exons Whose Expression Is Associated with Metastasis
-
10.1158/0008-5472.CAN-09-2703, 20103641
-
Dutertre M, Lacroix-Triki M, Driouch K, de la Grange P, Gratadou L, Beck S, Millevoi S, Tazi J, Lidereau R, Vagner S, Auboeuf D. Exon-Based Clustering of Murine Breast Tumor Transcriptomes Reveals Alternative Exons Whose Expression Is Associated with Metastasis. Cancer Res 2010, 70(3):896-905. 10.1158/0008-5472.CAN-09-2703, 20103641.
-
(2010)
Cancer Res
, vol.70
, Issue.3
, pp. 896-905
-
-
Dutertre, M.1
Lacroix-Triki, M.2
Driouch, K.3
de la Grange, P.4
Gratadou, L.5
Beck, S.6
Millevoi, S.7
Tazi, J.8
Lidereau, R.9
Vagner, S.10
Auboeuf, D.11
-
59
-
-
0142025131
-
Loss of expression of tropomyosin-1, a novel class II tumor suppressor that induces anoikis, in primary breast tumors
-
10.1038/sj.onc.1206719, 13679858
-
Raval GN, Bharadwaj S, Levine EA, Willingham MC, Geary RL, Kute T, Prasad GL. Loss of expression of tropomyosin-1, a novel class II tumor suppressor that induces anoikis, in primary breast tumors. Oncogene 2003, 22(40):6194-6203. 10.1038/sj.onc.1206719, 13679858.
-
(2003)
Oncogene
, vol.22
, Issue.40
, pp. 6194-6203
-
-
Raval, G.N.1
Bharadwaj, S.2
Levine, E.A.3
Willingham, M.C.4
Geary, R.L.5
Kute, T.6
Prasad, G.L.7
-
60
-
-
22144496508
-
Candidates for tumor-specific alternative splicing
-
10.1016/j.bbrc.2005.06.057, 16018876
-
Okumura M, Kondo S, Ogata M, Kanemoto S, Murakami T, Yanagida K, Saito A, Imaizumi K. Candidates for tumor-specific alternative splicing. Biochem Biophys Res Commun 2005, 334:23-29. 10.1016/j.bbrc.2005.06.057, 16018876.
-
(2005)
Biochem Biophys Res Commun
, vol.334
, pp. 23-29
-
-
Okumura, M.1
Kondo, S.2
Ogata, M.3
Kanemoto, S.4
Murakami, T.5
Yanagida, K.6
Saito, A.7
Imaizumi, K.8
-
61
-
-
33748345191
-
Corepressors: custom tailoring and alterations while you wait
-
10.1621/nrs.03003, 1402215, 16604171
-
Goodson M, Jonas BA, Privalsky MA. Corepressors: custom tailoring and alterations while you wait. Nucl Recept Signal 2005, 3:e003. 10.1621/nrs.03003, 1402215, 16604171.
-
(2005)
Nucl Recept Signal
, vol.3
-
-
Goodson, M.1
Jonas, B.A.2
Privalsky, M.A.3
-
62
-
-
59649107040
-
An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
-
10.1038/nsmb.1545, 2735254, 19136955
-
Yeo GW, Coufal NG, Liang TY, Peng GE, Fu XD, Gage FH. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nat Struct Mol Biol 2009, 16(2):130-137. 10.1038/nsmb.1545, 2735254, 19136955.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.2
, pp. 130-137
-
-
Yeo, G.W.1
Coufal, N.G.2
Liang, T.Y.3
Peng, G.E.4
Fu, X.D.5
Gage, F.H.6
-
63
-
-
21444445235
-
Interpreting expression profiles of cancers by genome-wide survey of breadth of expression in normal tissues
-
10.1016/j.ygeno.2005.04.008, 15950434
-
Ge X, Yamamoto S, Tsutsumi S, Midorikawa Y, Ihara S, Wang SM, Aburatani H. Interpreting expression profiles of cancers by genome-wide survey of breadth of expression in normal tissues. Genomics 2005, 86(2):127-141. 10.1016/j.ygeno.2005.04.008, 15950434.
-
(2005)
Genomics
, vol.86
, Issue.2
, pp. 127-141
-
-
Ge, X.1
Yamamoto, S.2
Tsutsumi, S.3
Midorikawa, Y.4
Ihara, S.5
Wang, S.M.6
Aburatani, H.7
-
64
-
-
27644455141
-
Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals
-
10.1128/MCB.25.22.10005-10016.2005, 1280273, 16260614
-
Underwood JG, Boutz PL, Dougherty JD, Stoilov P, Black DL. Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals. Mol Cell Biol 2005, 25(22):10005-10016. 10.1128/MCB.25.22.10005-10016.2005, 1280273, 16260614.
-
(2005)
Mol Cell Biol
, vol.25
, Issue.22
, pp. 10005-10016
-
-
Underwood, J.G.1
Boutz, P.L.2
Dougherty, J.D.3
Stoilov, P.4
Black, D.L.5
-
65
-
-
0036190973
-
A negative coregulator for the human ER
-
10.1210/me.16.3.459, 11875103
-
Norris JD, Fan D, Sherk A, McDonnell DP. A negative coregulator for the human ER. Mol Endocrinol 2002, 16(3):459-468. 10.1210/me.16.3.459, 11875103.
-
(2002)
Mol Endocrinol
, vol.16
, Issue.3
, pp. 459-468
-
-
Norris, J.D.1
Fan, D.2
Sherk, A.3
McDonnell, D.P.4
-
66
-
-
33646484524
-
NUP98 rearrangements in hematopoietic malignancies: a study of the Groupe Francophone de Cytogénétique Hématologique
-
10.1038/sj.leu.2404130, 16467868
-
Romana SP, Radford-Weiss I, Abdelali RB, Schluth C, Petit A, Dastugue N, Talmant P, Bilhou-Nabera C, Mugneret F, Lafage-Pochitalo M, Mozziconacci MJ, Andrieu J, Lai JL, Terre C, Rack K, Cornillet-Lefebvre P, Luquet I, Nadal N, Nguyen-Khac F, Perot C, den Akker JV, Fert-Ferrer S, Cabrol C, Charrin C, Tigaud I, Poirel H, Vekemans M, Bernard OA, Berger R, de Cytogénétique Hématolog GF. NUP98 rearrangements in hematopoietic malignancies: a study of the Groupe Francophone de Cytogénétique Hématologique. Leukemia 2006, 20(4):696-706. 10.1038/sj.leu.2404130, 16467868.
-
(2006)
Leukemia
, vol.20
, Issue.4
, pp. 696-706
-
-
Romana, S.P.1
Radford-Weiss, I.2
Abdelali, R.B.3
Schluth, C.4
Petit, A.5
Dastugue, N.6
Talmant, P.7
Bilhou-Nabera, C.8
Mugneret, F.9
Lafage-Pochitalo, M.10
Mozziconacci, M.J.11
Andrieu, J.12
Lai, J.L.13
Terre, C.14
Rack, K.15
Cornillet-Lefebvre, P.16
Luquet, I.17
Nadal, N.18
Nguyen-Khac, F.19
Perot, C.20
den Akker, J.V.21
Fert-Ferrer, S.22
Cabrol, C.23
Charrin, C.24
Tigaud, I.25
Poirel, H.26
Vekemans, M.27
Bernard, O.A.28
Berger, R.29
de Cytogénétique Hématolog, G.F.30
more..
-
67
-
-
0034958883
-
Spectrin and ankyrin-based pathways: metazoan inventions for integrating cells into tissues
-
Bennett V, Baines AJ. Spectrin and ankyrin-based pathways: metazoan inventions for integrating cells into tissues. Physiol Rev 2001, 81(3):1353-1392.
-
(2001)
Physiol Rev
, vol.81
, Issue.3
, pp. 1353-1392
-
-
Bennett, V.1
Baines, A.J.2
-
68
-
-
0033929093
-
Adducin: structure, function and regulation
-
10.1007/PL00000731, 10950304
-
Matsuoka Y, Li X, Bennett V. Adducin: structure, function and regulation. Cell Mol Life Sci 2000, 57(6):884-895. 10.1007/PL00000731, 10950304.
-
(2000)
Cell Mol Life Sci
, vol.57
, Issue.6
, pp. 884-895
-
-
Matsuoka, Y.1
Li, X.2
Bennett, V.3
|