메뉴 건너뛰기




Volumn 7, Issue 7, 2008, Pages 1214-1224

Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis

Author keywords

[No Author keywords available]

Indexed keywords

ACTININ; ALPHA TROPOMYOSIN; ALPHA1 ACTININ; CALDESMON; COLLAGEN TYPE 6; COLLAGEN TYPE 6 ALPHA 3; GENE PRODUCT; LEUCINE RICH REPEAT IN FLIGHTLESS INTERACTION PROTEIN 2; PHOSPHATIDYLINOSITOL KINASE; RNA; VINCULIN;

EID: 47849097478     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.M700590-MCP200     Document Type: Article
Times cited : (187)

References (45)
  • 5
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816
    • (2007) Nature , vol.447 , pp. 799-816
  • 6
    • 34248368920 scopus 로고    scopus 로고
    • Tress, M. L., Martelli, P. L., Frankish, A., Reeves, G. A., Wesselink, J. J., Yeats, C., Olason, P. L., Albrecht, M., Hegyi, H., Giorgetti, A., Raimondo, D., Lagarde, J., Laskowski, R. A., Lopez, G., Sadowski, M. I., Watson, J. D., Fariselli, P., Rossi, I., Nagy, A., Kai, W., Stoding, Z., Orsini, M., Assenov, Y., Blankenburg, H., Huthmacher, C., Ramirez, F., Schlicker, A., Denoeud, F., Jones, P., Kerrien, S., Orchard, S., Antonarakis, S. E., Reymond, A., Bimey, E., Brunak, S., Casadio, R., Guigo, R., Harrow, J., Hermjakob, H., Jones, D. T., Lengauer, T., Orengo, C. A., Palthy, L., Thornton, J. M., Tramontano, A., and Valencia, A. (2007) The implications of alternative splicing in the ENCODE protein complement. Proc. Natl. Acad. Sci. U. S. A. 104, 5495-5500
    • Tress, M. L., Martelli, P. L., Frankish, A., Reeves, G. A., Wesselink, J. J., Yeats, C., Olason, P. L., Albrecht, M., Hegyi, H., Giorgetti, A., Raimondo, D., Lagarde, J., Laskowski, R. A., Lopez, G., Sadowski, M. I., Watson, J. D., Fariselli, P., Rossi, I., Nagy, A., Kai, W., Stoding, Z., Orsini, M., Assenov, Y., Blankenburg, H., Huthmacher, C., Ramirez, F., Schlicker, A., Denoeud, F., Jones, P., Kerrien, S., Orchard, S., Antonarakis, S. E., Reymond, A., Bimey, E., Brunak, S., Casadio, R., Guigo, R., Harrow, J., Hermjakob, H., Jones, D. T., Lengauer, T., Orengo, C. A., Palthy, L., Thornton, J. M., Tramontano, A., and Valencia, A. (2007) The implications of alternative splicing in the ENCODE protein complement. Proc. Natl. Acad. Sci. U. S. A. 104, 5495-5500
  • 8
    • 21244439380 scopus 로고    scopus 로고
    • Regulation of apoptosis by alternative pre-mRNA splicing
    • Schwerk, C., and Schulze-Osthoff, K. (2005) Regulation of apoptosis by alternative pre-mRNA splicing. Mol. Cell 19, 1-13
    • (2005) Mol. Cell , vol.19 , pp. 1-13
    • Schwerk, C.1    Schulze-Osthoff, K.2
  • 9
    • 34247330971 scopus 로고    scopus 로고
    • Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
    • Lareau, L. F., Inada, M., Green, R. E., Wengrod, J. C., and Brenner, S. E. (2007) Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature 446, 926-929
    • (2007) Nature , vol.446 , pp. 926-929
    • Lareau, L.F.1    Inada, M.2    Green, R.E.3    Wengrod, J.C.4    Brenner, S.E.5
  • 10
    • 33947305594 scopus 로고    scopus 로고
    • Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
    • Ni, J. Z., Grate, L., Donohue, J. P., Preston, C., Nobida, N., O'Brien, G., Shiue, L., Clark, T. A., Blume, J. E., and Ares, M., Jr. (2007) Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev. 21, 708-718
    • (2007) Genes Dev , vol.21 , pp. 708-718
    • Ni, J.Z.1    Grate, L.2    Donohue, J.P.3    Preston, C.4    Nobida, N.5    O'Brien, G.6    Shiue, L.7    Clark, T.A.8    Blume, J.E.9    Ares Jr., M.10
  • 11
    • 34447106755 scopus 로고    scopus 로고
    • Alternative splicing in cancer: Noise, functional, or systematic?
    • Skotheim, R. I., and Nees, M. (2007) Alternative splicing in cancer: noise, functional, or systematic? Int. J. Biochem. Cell Biol. 39, 1432-1449
    • (2007) Int. J. Biochem. Cell Biol , vol.39 , pp. 1432-1449
    • Skotheim, R.I.1    Nees, M.2
  • 13
    • 33947541694 scopus 로고    scopus 로고
    • Alternative splicing: An emerging topic in molecular and clinical oncology
    • Pajares, M. J., Ezponda, T., Catena, R., Calvo, A., Pio, R., and Montuenga, L. M. (2007) Alternative splicing: an emerging topic in molecular and clinical oncology. Lancet Oncol. 8, 349-357
    • (2007) Lancet Oncol , vol.8 , pp. 349-357
    • Pajares, M.J.1    Ezponda, T.2    Catena, R.3    Calvo, A.4    Pio, R.5    Montuenga, L.M.6
  • 15
    • 26444502673 scopus 로고    scopus 로고
    • A microarray configuration to quantify expression levels and relative abundance of splice variants
    • Fehlbaum, P., Guihal, C., Bracco, L., and Cochet, O. (2005) A microarray configuration to quantify expression levels and relative abundance of splice variants. Nucleic Acids Res. 33, e47
    • (2005) Nucleic Acids Res , vol.33
    • Fehlbaum, P.1    Guihal, C.2    Bracco, L.3    Cochet, O.4
  • 17
    • 33646240135 scopus 로고    scopus 로고
    • Two-dimensional transcriptome profiling: Identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens
    • Li, H. R., Wang-Rodriguez, J., Nair, T. M., Yeakley, J. M., Kwon, Y. S., Bibikova, M., Zheng, C., Zhou, L., Zhang, K., Downs, T., Fu, X. D., and Fan, J. B. (2006) Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens. Cancer Res. 66, 4079-4088
    • (2006) Cancer Res , vol.66 , pp. 4079-4088
    • Li, H.R.1    Wang-Rodriguez, J.2    Nair, T.M.3    Yeakley, J.M.4    Kwon, Y.S.5    Bibikova, M.6    Zheng, C.7    Zhou, L.8    Zhang, K.9    Downs, T.10    Fu, X.D.11    Fan, J.B.12
  • 22
    • 34147129237 scopus 로고    scopus 로고
    • Use of an axon software package to identify global gene splicing and gene expression regulation
    • International Scientific Communications Inc, Shelton, CT
    • Goncalves, J., and Edwards, D. J. (2007) Use of an axon software package to identify global gene splicing and gene expression regulation. American Biotechnology Laboratory, Vol. 25, No. 4, International Scientific Communications Inc., Shelton, CT
    • (2007) American Biotechnology Laboratory , vol.25 , Issue.4
    • Goncalves, J.1    Edwards, D.J.2
  • 26
    • 33747846259 scopus 로고    scopus 로고
    • FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB
    • Wemersson, R., Rapacki, K., Staerfeldt, H. H., Sackett, P. W., and Molgaard, A. (2006) FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB. Nucleic Acids Res. 34, W84-88
    • (2006) Nucleic Acids Res , vol.34
    • Wemersson, R.1    Rapacki, K.2    Staerfeldt, H.H.3    Sackett, P.W.4    Molgaard, A.5
  • 29
    • 0033579464 scopus 로고    scopus 로고
    • Sequence and structure-based prediction of eukaryotic protein phosphorylation sites
    • Blom, N., Gammeltoft, S., and Brunak, S. (1999) Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mol. Biol. 294, 1351-1362
    • (1999) J. Mol. Biol , vol.294 , pp. 1351-1362
    • Blom, N.1    Gammeltoft, S.2    Brunak, S.3
  • 30
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • Emanuelsson, O., Brunak, S., von Heijne, G., and Nielsen, H. (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2, 953-971
    • (2007) Nat. Protoc , vol.2 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 31
    • 13644257223 scopus 로고    scopus 로고
    • Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites
    • Julenius, K., Molgaard, A., Gupta, R., and Brunak, S. (2005) Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites. Glycobiology 15, 153-164
    • (2005) Glycobiology , vol.15 , pp. 153-164
    • Julenius, K.1    Molgaard, A.2    Gupta, R.3    Brunak, S.4
  • 32
    • 0027942193 scopus 로고
    • Characterization of persistent artifacts resulting from RT-PCR of alternatively spliced mRNAs
    • Zacharias, D. A., Garamszegi, N., and Strehler, E. E. (1994) Characterization of persistent artifacts resulting from RT-PCR of alternatively spliced mRNAs. BioTechniques 17, 652-655
    • (1994) BioTechniques , vol.17 , pp. 652-655
    • Zacharias, D.A.1    Garamszegi, N.2    Strehler, E.E.3
  • 34
    • 4444257529 scopus 로고    scopus 로고
    • 2+-calmodulin binding interferes with assembly of stress fibers and affects cell morphology, growth and motility
    • 2+-calmodulin binding interferes with assembly of stress fibers and affects cell morphology, growth and motility. J. Cell Sci. 117, 3593-3604
    • (2004) J. Cell Sci , vol.117 , pp. 3593-3604
    • Li, Y.1    Lin, J.L.2    Reiter, R.S.3    Daniels, K.4    Soll, D.R.5    Lin, J.J.6
  • 35
    • 21744441321 scopus 로고    scopus 로고
    • Structural dynamics of α-actinin-vinculin interactions
    • Bois, P. R., Borgon, R. A., Vonrhein, C., and Izard, T. (2005) Structural dynamics of α-actinin-vinculin interactions. Mol. Cell. Biol. 25, 6112-6122
    • (2005) Mol. Cell. Biol , vol.25 , pp. 6112-6122
    • Bois, P.R.1    Borgon, R.A.2    Vonrhein, C.3    Izard, T.4
  • 36
    • 23744434292 scopus 로고    scopus 로고
    • Silencing of the Tropomyosin-1 gene by DNA methylation alters tumor suppressor function of TGF-β
    • Varga, A. E., Stourman, N. V., Zheng, Q., Safina, A. F., Quan, L., Li, X., Sossey-Alaoui, K., and Bakin, A. V. (2005) Silencing of the Tropomyosin-1 gene by DNA methylation alters tumor suppressor function of TGF-β. Oncogene 24, 5043-5052
    • (2005) Oncogene , vol.24 , pp. 5043-5052
    • Varga, A.E.1    Stourman, N.V.2    Zheng, Q.3    Safina, A.F.4    Quan, L.5    Li, X.6    Sossey-Alaoui, K.7    Bakin, A.V.8
  • 37
    • 0027097843 scopus 로고
    • The human type VI collagen gene. mRNA and protein variants of the α3 chain generated by alternative splicing of an additional 5-end exon
    • Zanussi, S., Doliana, R., Segat, D., Bonaldo, P., and Colombatti, A. (1992) The human type VI collagen gene. mRNA and protein variants of the α3 chain generated by alternative splicing of an additional 5-end exon. J. Biol. Chem. 267, 24082-24089
    • (1992) J. Biol. Chem , vol.267 , pp. 24082-24089
    • Zanussi, S.1    Doliana, R.2    Segat, D.3    Bonaldo, P.4    Colombatti, A.5
  • 38
    • 13844321895 scopus 로고    scopus 로고
    • Identification of the Wnt signaling activator leucine-rich repeat in Flightless interaction protein 2 by a genome-wide functional analysis
    • Liu, J., Bang, A. G., Kintner, C., Orth, A. P., Chanda, S. K., Ding, S., and Schultz, P. G. (2005) Identification of the Wnt signaling activator leucine-rich repeat in Flightless interaction protein 2 by a genome-wide functional analysis. Proc. Natl. Acad. Sci. U. S. A. 102, 1927-1932
    • (2005) Proc. Natl. Acad. Sci. U. S. A , vol.102 , pp. 1927-1932
    • Liu, J.1    Bang, A.G.2    Kintner, C.3    Orth, A.P.4    Chanda, S.K.5    Ding, S.6    Schultz, P.G.7
  • 39
    • 33745933535 scopus 로고    scopus 로고
    • Phosphatidylinositol 4-kinases: Old enzymes with emerging functions
    • Balla, A., and Balla, T. (2006) Phosphatidylinositol 4-kinases: old enzymes with emerging functions. Trends Cell Biol. 16, 351-361
    • (2006) Trends Cell Biol , vol.16 , pp. 351-361
    • Balla, A.1    Balla, T.2
  • 40
    • 33746927884 scopus 로고    scopus 로고
    • The connection between splicing and cancer
    • Srebrow, A., and Komblihtt, A. R. (2006) The connection between splicing and cancer. J. Cell Sci. 119, 2635--2641
    • (2006) J. Cell Sci , vol.119 , pp. 2635-2641
    • Srebrow, A.1    Komblihtt, A.R.2
  • 41
    • 2942564379 scopus 로고    scopus 로고
    • The actin cytoskeleton in normal and pathological cell motility
    • Lambrechts, A., Van Troys, M., and Ampe, C. (2004) The actin cytoskeleton in normal and pathological cell motility. Int. J. Biochem. Cell Biol. 36, 1890-1909
    • (2004) Int. J. Biochem. Cell Biol , vol.36 , pp. 1890-1909
    • Lambrechts, A.1    Van Troys, M.2    Ampe, C.3
  • 42
    • 23844488162 scopus 로고    scopus 로고
    • Regulation of cancer cell motility through actin reorganization
    • Yamazaki, D., Kurisu, S., and Takenawa, T. (2005) Regulation of cancer cell motility through actin reorganization. Cancer Sci. 96, 379-386
    • (2005) Cancer Sci , vol.96 , pp. 379-386
    • Yamazaki, D.1    Kurisu, S.2    Takenawa, T.3
  • 43
    • 0141484480 scopus 로고    scopus 로고
    • Remodeling of the extracellular matrix through overexpression of collagen VI contributes to cisplatin resistance in ovarian cancer cells
    • Sherman-Baust, C. A., Weeraratna, A. T., Rangel, L. B., Pizer, E. S., Cho, K. R., Schwartz, D. R., Shock, T., and Morin, P. J. (2003) Remodeling of the extracellular matrix through overexpression of collagen VI contributes to cisplatin resistance in ovarian cancer cells. Cancer Cell 3, 377-386
    • (2003) Cancer Cell , vol.3 , pp. 377-386
    • Sherman-Baust, C.A.1    Weeraratna, A.T.2    Rangel, L.B.3    Pizer, E.S.4    Cho, K.R.5    Schwartz, D.R.6    Shock, T.7    Morin, P.J.8
  • 44
    • 33947302281 scopus 로고    scopus 로고
    • Involvement of splicing factor-1 in β-catenin/T-cell factor-4-mediated gene transactivation and pre-mRNA splicing
    • Shitashige, M., Naishiro, Y., Idogawa, M., Honda, K., Ono, M., Hirohashi, S., and Yamada, T. (2007) Involvement of splicing factor-1 in β-catenin/T-cell factor-4-mediated gene transactivation and pre-mRNA splicing. Gastroenterology 132, 1039-1054
    • (2007) Gastroenterology , vol.132 , pp. 1039-1054
    • Shitashige, M.1    Naishiro, Y.2    Idogawa, M.3    Honda, K.4    Ono, M.5    Hirohashi, S.6    Yamada, T.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.