메뉴 건너뛰기




Volumn 8, Issue 5, 2007, Pages

An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; EXON; GENE EXPRESSION; GENE IDENTIFICATION; GENE MAPPING; GENETIC DATABASE; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HIGH THROUGHPUT SCREENING; HUMAN; HUMAN CELL; INTERNET; MICROARRAY ANALYSIS; PREDICTION; WEB BROWSER; COMPUTER GRAPHICS; COMPUTER PROGRAM; DNA PROBE; GENETICS; GENOME; NUCLEIC ACID DATABASE; STATISTICAL MODEL;

EID: 34548824879     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2007-8-5-r79     Document Type: Article
Times cited : (33)

References (37)
  • 1
    • 33645833000 scopus 로고    scopus 로고
    • Unbalanced alternative splicing and its significance in cancer
    • 10.1002/bies.20390 16547952
    • Venables JP Unbalanced alternative splicing and its significance in cancer. Bioessays 2006 28 378-386 10.1002/bies.20390 16547952
    • (2006) Bioessays , vol.28 , pp. 378-386
    • Venables, J.P.1
  • 2
    • 0037443035 scopus 로고    scopus 로고
    • Pre-mRNA splicing and human disease
    • 10.1101/gad.1048803 12600935
    • Faustino NA Cooper TA Pre-mRNA splicing and human disease. Genes Dev 2003 17 419-437 10.1101/gad.1048803 12600935
    • (2003) Genes Dev , vol.17 , pp. 419-437
    • Faustino, N.A.1    Cooper, T.A.2
  • 3
    • 0142134358 scopus 로고    scopus 로고
    • The relevance of alternative RNA splicing to pharmacogenomics
    • 10.1016/S0167-7799(03)00146-X 12902171
    • Bracco L Kearsey J The relevance of alternative RNA splicing to pharmacogenomics. Trends Biotechnol 2003 21 346-353 10.1016/ S0167-7799(03)00146-X 12902171
    • (2003) Trends Biotechnol , vol.21 , pp. 346-353
    • Bracco, L.1    Kearsey, J.2
  • 5
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • 10.1038/ng0102-13 11753382
    • Modrek B Lee C A genomic view of alternative splicing. Nat Genet 2002 30 13-19 10.1038/ng0102-13 11753382
    • (2002) Nat Genet , vol.30 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 6
    • 34247644400 scopus 로고    scopus 로고
    • High correspondence between Affymetrix exon and standard expression arrays
    • 17373482
    • Okoniewski MJ Hey Y Pepper SD Miller C High correspondence between Affymetrix exon and standard expression arrays. Biotechniques 2007 42 181-185 17373482
    • (2007) Biotechniques , vol.42 , pp. 181-185
    • Okoniewski, M.J.1    Hey, Y.2    Pepper, S.D.3    Miller, C.4
  • 8
    • 33750011541 scopus 로고    scopus 로고
    • RNA world - The dark matter of evolutionary genomics
    • 10.1111/j.1420-9101.2006.01141.x 17040373
    • Michalak P RNA world - the dark matter of evolutionary genomics. J Evol Biol 2006 19 1768-1774 10.1111/j.1420-9101.2006.01141.x 17040373
    • (2006) J Evol Biol , vol.19 , pp. 1768-1774
    • Michalak, P.1
  • 9
    • 12344291073 scopus 로고    scopus 로고
    • Dark matter in the genome: Evidence of widespread transcription detected by microarray tiling experiments
    • 10.1016/j.tig.2004.12.009 15661355
    • Johnson JM Edwards S Shoemaker D Schadt EE Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends Genet 2005 21 93-102 10.1016/j.tig.2004.12.009 15661355
    • (2005) Trends Genet , vol.21 , pp. 93-102
    • Johnson, J.M.1    Edwards, S.2    Shoemaker, D.3    Schadt, E.E.4
  • 10
    • 0037062973 scopus 로고    scopus 로고
    • The brave new world of RNA
    • 10.1038/418122a 12110860
    • Dennis C The brave new world of RNA. Nature 2002 418 122-124 10.1038/ 418122a 12110860
    • (2002) Nature , vol.418 , pp. 122-124
    • Dennis, C.1
  • 12
    • 25444515422 scopus 로고    scopus 로고
    • Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
    • 1127107 15850491 10.1186/1471-2105-6-107
    • Carter SL Eklund AC Mecham BH Kohane IS Szallasi Z Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. BMC Bioinformatics 2005 6 107 1127107 15850491 10.1186/1471-2105-6-107
    • (2005) BMC Bioinformatics , vol.6 , pp. 107
    • Carter, S.L.1    Eklund, A.C.2    Mecham, B.H.3    Kohane, I.S.4    Szallasi, Z.5
  • 13
    • 13244268329 scopus 로고    scopus 로고
    • Combining gene expression data from different generations of oligonucleotide arrays
    • 528726 15504239 10.1186/1471-2105-5-159
    • Hwang KB Kong SW Greenberg SA Park PJ Combining gene expression data from different generations of oligonucleotide arrays. BMC Bioinformatics 2004 5 159 528726 15504239 10.1186/1471-2105-5-159
    • (2004) BMC Bioinformatics , vol.5 , pp. 159
    • Hwang, K.B.1    Kong, S.W.2    Greenberg, S.A.3    Park, P.J.4
  • 14
    • 19544369863 scopus 로고    scopus 로고
    • ADAPT: A Database of Affymetrix Probesets and Transcripts
    • 10.1093/bioinformatics/bti359 15746287
    • Leong HS Yates T Wilson C Miller CJ ADAPT: A Database of Affymetrix Probesets and Transcripts. Bioinformatics 2005 21 2552-2553 10.1093/ bioinformatics/bti359 15746287
    • (2005) Bioinformatics , vol.21 , pp. 2552-2553
    • Leong, H.S.1    Yates, T.2    Wilson, C.3    Miller, C.J.4
  • 15
    • 0033049747 scopus 로고    scopus 로고
    • A RAPID algorithm for sequence database comparisons: Application to the identification of vector contamination in the EMBL databases
    • 10.1093/bioinformatics/15.2.111 10089196
    • Miller C Gurd J Brass A A RAPID algorithm for sequence database comparisons: Application to the identification of vector contamination in the EMBL databases. Bioinformatics 1999 15 111-121 10.1093/ bioinformatics/15.2.111 10089196
    • (1999) Bioinformatics , vol.15 , pp. 111-121
    • Miller, C.1    Gurd, J.2    Brass, A.3
  • 17
    • 46049097079 scopus 로고    scopus 로고
    • Google Maps API http://www.google.com/apis/maps/
  • 18
    • 46049120734 scopus 로고    scopus 로고
    • X:MAP http://xmap.picr.man.ac.uk
  • 21
    • 24044522270 scopus 로고    scopus 로고
    • BioMart and Bioconductor: A powerful link between biological databases and microarray data analysis
    • 10.1093/bioinformatics/bti525 16082012
    • Durinck S Moreau Y Kasprzyk A Davis S De Moor B Brazma A Huber W BioMart and Bioconductor: A powerful link between biological databases and microarray data analysis. Bioinformatics 2005 21 3439-3440 10.1093/ bioinformatics/bti525 16082012
    • (2005) Bioinformatics , vol.21 , pp. 3439-3440
    • Durinck, S.1    Moreau, Y.2    Kasprzyk, A.3    Davis, S.4    De Moor, B.5    Brazma, A.6    Huber, W.7
  • 22
    • 24644474055 scopus 로고    scopus 로고
    • Multievidence microarray mining
    • 10.1016/j.tig.2005.07.011 16098629
    • Seifert M Scherf M Epple A Werner T Multievidence microarray mining. Trends Genet 2005 21 553-558 10.1016/j.tig.2005.07.011 16098629
    • (2005) Trends Genet , vol.21 , pp. 553-558
    • Seifert, M.1    Scherf, M.2    Epple, A.3    Werner, T.4
  • 23
    • 46049111535 scopus 로고    scopus 로고
    • Paterson Institute for Cancer Research Bioinformatics Group Homepage
    • Paterson Institute for Cancer Research Bioinformatics Group Homepage http://bioinformatics.picr.man.ac.uk
  • 24
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • 33173 11309499 10.1073/pnas.091062498
    • Tusher VG Tibshirani R Chu G Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001 98 5116-5121 33173 11309499 10.1073/pnas.091062498
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 26
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • 10.1093/biostatistics/4.2.249 12925520
    • Irizarry R Hobbs B Collin F Beazer-Barclay Y Antonellis K Scherf U Speed TP Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003 4 249-264 10.1093/biostatistics/4.2.249 12925520
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.4    Antonellis, K.5    Scherf, U.6    Speed, T.P.7
  • 28
    • 0037012922 scopus 로고    scopus 로고
    • Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays
    • 10.1126/science.1069415 11988574
    • Clark TA Sugnet CW Ares M Jr Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays. Science 2002 296 907-910 10.1126/science.1069415 11988574
    • (2002) Science , vol.296 , pp. 907-910
    • Clark, T.A.1    Sugnet, C.W.2    Ares Jr., M.3
  • 29
    • 29144480020 scopus 로고    scopus 로고
    • ANOSVA: A statistical method for detecting splice variation from expression data
    • 10.1093/bioinformatics/bti1010 15961447
    • Cline MS Blume J Cawley S Clark TA Hu JS Lu G Salomonis N Wang H Williams A ANOSVA: A statistical method for detecting splice variation from expression data. Bioinformatics 2005 21 Suppl 1 i107-115 10.1093/ bioinformatics/bti1010 15961447
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Cline, M.S.1    Blume, J.2    Cawley, S.3    Clark, T.A.4    Hu, J.S.5    Lu, G.6    Salomonis, N.7    Wang, H.8    Williams, A.9
  • 30
  • 32
    • 34250903514 scopus 로고    scopus 로고
    • Genome display tool: Visualizing features in complex data sets
    • 1805442 17300731 10.1186/1751-0473-2-1
    • Viswanath L Lu Y Fox G Genome display tool: Visualizing features in complex data sets. Source Code Biol Med 2007 2 1 1805442 17300731 10.1186/1751-0473-2-1
    • (2007) Source Code Biol Med , vol.2 , pp. 1
    • Viswanath, L.1    Lu, Y.2    Fox, G.3
  • 33
    • 33749989365 scopus 로고    scopus 로고
    • EGenomes as geography: Using GIS technology to build interactive genome feature maps
    • 1599760 16984652 10.1186/1471-2105-7-416
    • Dolan M Holden CC Beard MK Bult CJ EGenomes as geography: Using GIS technology to build interactive genome feature maps. BMC Bioinformatics 2006 7 416 1599760 16984652 10.1186/1471-2105-7-416
    • (2006) BMC Bioinformatics , vol.7 , pp. 416
    • Dolan, M.1    Holden, C.C.2    Beard, M.K.3    Bult, C.J.4
  • 35
    • 46049088616 scopus 로고    scopus 로고
    • Netaffx Analysis Center http://www.affymetrix.com/analysis/index.affx
  • 36
    • 46049097280 scopus 로고    scopus 로고
    • exonmap http://www.bioconductor.org/packages/2.0/bioc/html/exonmap.html


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.