-
1
-
-
0033552946
-
Robustness in bacterial chemotaxis
-
Alon U., Surette M.G., Barkai N., Leibler S. Robustness in bacterial chemotaxis. Nature 1999, 397:168-171.
-
(1999)
Nature
, vol.397
, pp. 168-171
-
-
Alon, U.1
Surette, M.G.2
Barkai, N.3
Leibler, S.4
-
2
-
-
0842268067
-
A new algorithm for RNA secondary structure design
-
Andronescu M., Fejes A.P., Hutter F., Hoos H.H., Condon A. A new algorithm for RNA secondary structure design. J. Mol. Biol. 2004, 336:607-624.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 607-624
-
-
Andronescu, M.1
Fejes, A.P.2
Hutter, F.3
Hoos, H.H.4
Condon, A.5
-
3
-
-
0030797355
-
Robustness in simple biochemical networks
-
Barkai N., Leibler S. Robustness in simple biochemical networks. Nature 1997, 387:913-917.
-
(1997)
Nature
, vol.387
, pp. 913-917
-
-
Barkai, N.1
Leibler, S.2
-
4
-
-
21444457242
-
Programmable ligand-controlled riboregulators of eukaryotic gene expression
-
Bayer T.S., Smolke C.D. Programmable ligand-controlled riboregulators of eukaryotic gene expression. Nat. Biotechnol. 2005, 23:337-343.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 337-343
-
-
Bayer, T.S.1
Smolke, C.D.2
-
6
-
-
0009952303
-
Robustness of the bistable behavior of a biological signaling feedback loop
-
Bhalla U.S., Iyengar R. Robustness of the bistable behavior of a biological signaling feedback loop. Chaos 2001, 11:221-226.
-
(2001)
Chaos
, vol.11
, pp. 221-226
-
-
Bhalla, U.S.1
Iyengar, R.2
-
7
-
-
33646240072
-
Direct evolution of genetic robustness in microRNA
-
Borenstein E., Ruppin E. Direct evolution of genetic robustness in microRNA. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:6593-6598.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 6593-6598
-
-
Borenstein, E.1
Ruppin, E.2
-
8
-
-
11144330098
-
Natural and engineered nucleic acids as tools to explore biology
-
Breaker R.R. Natural and engineered nucleic acids as tools to explore biology. Nature 2004, 432:838-845.
-
(2004)
Nature
, vol.432
, pp. 838-845
-
-
Breaker, R.R.1
-
9
-
-
33747840719
-
INFO-RNA-a fast approach to inverse RNA folding
-
Busch A., Backofen R. INFO-RNA-a fast approach to inverse RNA folding. Bioinformatics 2006, 22:1823-1831.
-
(2006)
Bioinformatics
, vol.22
, pp. 1823-1831
-
-
Busch, A.1
Backofen, R.2
-
10
-
-
0037863216
-
In vivo evolution of an RNA-based transcriptional activator
-
Buskirk A.R., Kehayova P.D., Landrigan A., Liu D.R. In vivo evolution of an RNA-based transcriptional activator. Chem. Biol. 2003, 10:533-540.
-
(2003)
Chem. Biol.
, vol.10
, pp. 533-540
-
-
Buskirk, A.R.1
Kehayova, P.D.2
Landrigan, A.3
Liu, D.R.4
-
11
-
-
4344646564
-
Engineering a ligand-dependent RNA transcriptional activator
-
Buskirk A.R., Landrigan A., Liu D.R. Engineering a ligand-dependent RNA transcriptional activator. Chem. Biol. 2004, 11:1157-1163.
-
(2004)
Chem. Biol.
, vol.11
, pp. 1157-1163
-
-
Buskirk, A.R.1
Landrigan, A.2
Liu, D.R.3
-
12
-
-
33645463325
-
Solution structure of an informationally complex high-affinity RNA aptamer to GTP
-
Carothers J.M., Davis J.H., Chou J.J., Szostak J.W. Solution structure of an informationally complex high-affinity RNA aptamer to GTP. RNA 2006, 12:567-579.
-
(2006)
RNA
, vol.12
, pp. 567-579
-
-
Carothers, J.M.1
Davis, J.H.2
Chou, J.J.3
Szostak, J.W.4
-
13
-
-
1942489258
-
Informational complexity and functional activity of RNA structures
-
Carothers J.M., Oestreich S.C., Davis J.H., Szostak J.W. Informational complexity and functional activity of RNA structures. J. Am. Chem. Soc. 2004, 126:5130-5137.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 5130-5137
-
-
Carothers, J.M.1
Oestreich, S.C.2
Davis, J.H.3
Szostak, J.W.4
-
14
-
-
10844257474
-
Building programmable jigsaw puzzles with RNA
-
Chworos A., Severcan I., Koyfman A.Y., Weinkam P., Oroudjev E., Hansma H.G., Jaeger L. Building programmable jigsaw puzzles with RNA. Science 2004, 306:2068-2072.
-
(2004)
Science
, vol.306
, pp. 2068-2072
-
-
Chworos, A.1
Severcan, I.2
Koyfman, A.Y.3
Weinkam, P.4
Oroudjev, E.5
Hansma, H.G.6
Jaeger, L.7
-
16
-
-
4344670936
-
Bow ties, metabolism and disease
-
Csete M.E., Doyle J. Bow ties, metabolism and disease. Trends Biotechnol. 2004, 22:446-450.
-
(2004)
Trends Biotechnol.
, vol.22
, pp. 446-450
-
-
Csete, M.E.1
Doyle, J.2
-
17
-
-
0036500834
-
Reverse engineering of biological complexity
-
Csete M.E., Doyle J.C. Reverse engineering of biological complexity. Science 2002, 295:1664-1669.
-
(2002)
Science
, vol.295
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
18
-
-
6044261460
-
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
-
Desai S.K., Gallivan J.P. Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J. Am. Chem. Soc. 2004, 126:13247-13254.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 13247-13254
-
-
Desai, S.K.1
Gallivan, J.P.2
-
19
-
-
2542514671
-
Paradigms for computational nucleic acid design
-
Dirks R.M., Lin M., Winfree E., Pierce N.A. Paradigms for computational nucleic acid design. Nucleic Acids Res. 2004, 32:1392-1403.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1392-1403
-
-
Dirks, R.M.1
Lin, M.2
Winfree, E.3
Pierce, N.A.4
-
20
-
-
0020480242
-
Binding site of ribosomal proteins on prokaryotic 5S ribonucleic acids: a study with ribonucleases
-
Douthwaite S., Christensen A., Garrett R.A. Binding site of ribosomal proteins on prokaryotic 5S ribonucleic acids: a study with ribonucleases. Biochemistry 1982, 21:2313-2320.
-
(1982)
Biochemistry
, vol.21
, pp. 2313-2320
-
-
Douthwaite, S.1
Christensen, A.2
Garrett, R.A.3
-
21
-
-
0032493809
-
Trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis
-
Du H., Babitzke P. trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis. J. Biol. Chem. 1998, 273:20494-20503.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20494-20503
-
-
Du, H.1
Babitzke, P.2
-
22
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington A.D., Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 1990, 346:818-822.
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
23
-
-
28544451327
-
Foundations for engineering biology
-
Endy D. Foundations for engineering biology. Nature 2005, 438:449-453.
-
(2005)
Nature
, vol.438
, pp. 449-453
-
-
Endy, D.1
-
24
-
-
0035257394
-
Design of multistable RNA molecules
-
Flamm C., Hofacker I.L., Maurer-Stroh S., Stadler P.F., Zehl M. Design of multistable RNA molecules. RNA 2001, 7:254-265.
-
(2001)
RNA
, vol.7
, pp. 254-265
-
-
Flamm, C.1
Hofacker, I.L.2
Maurer-Stroh, S.3
Stadler, P.F.4
Zehl, M.5
-
25
-
-
21844467243
-
In vitro RNA random pools are not structurally diverse: a computational analysis
-
Gevertz J., Gan H.H., Schlick T. In vitro RNA random pools are not structurally diverse: a computational analysis. RNA 2005, 11:853-863.
-
(2005)
RNA
, vol.11
, pp. 853-863
-
-
Gevertz, J.1
Gan, H.H.2
Schlick, T.3
-
26
-
-
0030843806
-
Determinants of a protein-induced RNA switch in the large domain of signal recognition particle identified by systematic-site directed mutagenesis
-
Gowda K., Zwieb C. Determinants of a protein-induced RNA switch in the large domain of signal recognition particle identified by systematic-site directed mutagenesis. Nucleic Acids Res. 1997, 25:2835-2840.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2835-2840
-
-
Gowda, K.1
Zwieb, C.2
-
27
-
-
0034845858
-
Inducible regulation of the S. cerevisiae cell cycle mediated by an RNA aptamer-ligand complex
-
Grate D., Wilson C. Inducible regulation of the S. cerevisiae cell cycle mediated by an RNA aptamer-ligand complex. Bioorg. Med. Chem. 2001, 9:2565-2570.
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2565-2570
-
-
Grate, D.1
Wilson, C.2
-
28
-
-
31344435146
-
RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy
-
Guo P. RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy. J. Nanosci. Nanotechnol. 2005, 5:1964-1982.
-
(2005)
J. Nanosci. Nanotechnol.
, vol.5
, pp. 1964-1982
-
-
Guo, P.1
-
30
-
-
0035319006
-
Computational studies of gene regulatory networks: in numero molecular biology
-
Hasty J., McMillen D., Isaacs F., Collins J.J. Computational studies of gene regulatory networks: in numero molecular biology. Nat. Rev. Genet. 2001, 2:268-279.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 268-279
-
-
Hasty, J.1
McMillen, D.2
Isaacs, F.3
Collins, J.J.4
-
31
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker I.L. Vienna RNA secondary structure server. Nucleic Acids Res. 2003, 31:3429-3431.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
32
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker I.L., Fontana W., Stadler P.F., Bonhoeffer L.S., Tacker M., Schuster P. Fast folding and comparison of RNA secondary structures. Monatshefte fur Chemie/Chemical Monthly 1994, 125:167-188.
-
(1994)
Monatshefte fur Chemie/Chemical Monthly
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, L.S.4
Tacker, M.5
Schuster, P.6
-
33
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
Isaacs F.J., Dwyer D.J., Ding C., Pervouchine D.D., Cantor C.R., Collins J.J. Engineered riboregulators enable post-transcriptional control of gene expression. Nat. Biotechnol. 2004, 22:841-847.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 841-847
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Ding, C.3
Pervouchine, D.D.4
Cantor, C.R.5
Collins, J.J.6
-
34
-
-
33746655784
-
The architectonics of programmable RNA and DNA nanostructures
-
Jaeger L., Chworos A. The architectonics of programmable RNA and DNA nanostructures. Curr. Opin. Struct. Biol. 2006, 16:531-543.
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 531-543
-
-
Jaeger, L.1
Chworos, A.2
-
35
-
-
0032860385
-
Aptamers: an emerging class of molecules that rival antibodies in diagnostics
-
Jayasena S.D. Aptamers: an emerging class of molecules that rival antibodies in diagnostics. Clin. Chem. 1999, 9:1628-1650.
-
(1999)
Clin. Chem.
, vol.9
, pp. 1628-1650
-
-
Jayasena, S.D.1
-
36
-
-
0037031594
-
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes
-
Johansson J., Mandin P., Renzoni A., Chiaruttini C., Springer M., Cossart P. An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes. Cell 2002, 110:551-561.
-
(2002)
Cell
, vol.110
, pp. 551-561
-
-
Johansson, J.1
Mandin, P.2
Renzoni, A.3
Chiaruttini, C.4
Springer, M.5
Cossart, P.6
-
37
-
-
7644238181
-
Biological robustness
-
Kitano H. Biological robustness. Nat. Rev. Genet. 2004, 5:826-837.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 826-837
-
-
Kitano, H.1
-
38
-
-
1542619848
-
Cancer as a robust system: implications for anticancer therapy
-
Kitano H. Cancer as a robust system: implications for anticancer therapy. Nat. Rev. Cancer 2004, 4:227-235.
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 227-235
-
-
Kitano, H.1
-
39
-
-
33846903329
-
Biological robustness in complex host-pathogen systems
-
Kitano H. Biological robustness in complex host-pathogen systems. Prog. Drug Res. 2007, 64:239.
-
(2007)
Prog. Drug Res.
, vol.64
, pp. 239
-
-
Kitano, H.1
-
40
-
-
33745470929
-
Robustness trade-offs and host-microbial symbiosis in the immune system
-
Kitano H., Oda K. Robustness trade-offs and host-microbial symbiosis in the immune system. Mol. Syst. Biol. 2006, 2:2006.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 2006
-
-
Kitano, H.1
Oda, K.2
-
41
-
-
7644241654
-
Metabolic syndrome and robustness tradeoffs
-
Kitano H., Oda K., Kimura T., Matsuoka Y., Csete M., Doyle J., Muramatsu M. Metabolic syndrome and robustness tradeoffs. Diabetes 2004, 53:S6-S15.
-
(2004)
Diabetes
, vol.53
-
-
Kitano, H.1
Oda, K.2
Kimura, T.3
Matsuoka, Y.4
Csete, M.5
Doyle, J.6
Muramatsu, M.7
-
42
-
-
34548825690
-
Towards a theory of biological robustness
-
Kitano H. Towards a theory of biological robustness. Mol. Syst. Biol. 2007, 3.
-
(2007)
Mol. Syst. Biol.
, pp. 3
-
-
Kitano, H.1
-
43
-
-
0016703498
-
Allosteric mechanism for codon-dependent tRNA selection on ribosomes
-
Kurland C.G., Rigler R., Ehrenberg M., Blomberg C. Allosteric mechanism for codon-dependent tRNA selection on ribosomes. Proc. Natl. Acad. Sci. U.S.A 1975, 72:4248-4251.
-
(1975)
Proc. Natl. Acad. Sci. U.S.A
, vol.72
, pp. 4248-4251
-
-
Kurland, C.G.1
Rigler, R.2
Ehrenberg, M.3
Blomberg, C.4
-
44
-
-
0037381618
-
RNA sensors and riboswitches: self-regulating messages
-
Lai E.C. RNA sensors and riboswitches: self-regulating messages. Curr. Biol. 2003, 13:R285-R291.
-
(2003)
Curr. Biol.
, vol.13
-
-
Lai, E.C.1
-
45
-
-
0027173194
-
The Leptomonas collosoma spliced leader RNA can switch between two alternate structural forms
-
LeCuyer K.A., Crothers D.M. The Leptomonas collosoma spliced leader RNA can switch between two alternate structural forms. Biochemistry 1993, 32:5301-5311.
-
(1993)
Biochemistry
, vol.32
, pp. 5301-5311
-
-
LeCuyer, K.A.1
Crothers, D.M.2
-
48
-
-
33645454965
-
An efficient thermally induced RNA conformational switch as a framework for the functionalization of RNA nanostructures
-
Li X., Horiya S., Harada K. An efficient thermally induced RNA conformational switch as a framework for the functionalization of RNA nanostructures. J. Am. Chem Soc. 2006, 128:4035-4040.
-
(2006)
J. Am. Chem Soc.
, vol.128
, pp. 4035-4040
-
-
Li, X.1
Horiya, S.2
Harada, K.3
-
49
-
-
1842502985
-
Characterization of tectoRNA assembly with cationic conjugated polymers
-
Liu B., Baudrey S., Jaeger L., Bazan G.C. Characterization of tectoRNA assembly with cationic conjugated polymers. J. Am. Chem. Soc. 2004, 126:4076-4077.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 4076-4077
-
-
Liu, B.1
Baudrey, S.2
Jaeger, L.3
Bazan, G.C.4
-
50
-
-
0030806152
-
A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA
-
Lodmell J.S., Dahlberg A.E. A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA. Science 1997, 277:1262-1267.
-
(1997)
Science
, vol.277
, pp. 1262-1267
-
-
Lodmell, J.S.1
Dahlberg, A.E.2
-
51
-
-
0025264854
-
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
-
McCaskill J.S. The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers 1990, 29:1105-1119.
-
(1990)
Biopolymers
, vol.29
, pp. 1105-1119
-
-
McCaskill, J.S.1
-
52
-
-
23444461901
-
Advances in synthetic biology: on the path from prototypes to applications
-
McDaniel R., Weiss R. Advances in synthetic biology: on the path from prototypes to applications. Curr. Opin. Biotechnol. 2005, 16:476-483.
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 476-483
-
-
McDaniel, R.1
Weiss, R.2
-
53
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel F., Westhof E. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 1990, 216:585-610.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
54
-
-
0026077855
-
Alternative tertiary structure attenuates self-cleavage of the ribozyme in the satellite RNA of barley yellow dwarf virus
-
Miller W.A., Silver S.L. Alternative tertiary structure attenuates self-cleavage of the ribozyme in the satellite RNA of barley yellow dwarf virus. Nucleic Acids Res. 1991, 19:5313-5320.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 5313-5320
-
-
Miller, W.A.1
Silver, S.L.2
-
55
-
-
0001641104
-
Translational induction of heat shock transcription factor sigma32: evidence for a built-in RNA thermosensor
-
Morita M.T., Tanaka Y., Kodama T.S., Kyogoku Y., Yanagi H., Yura T. Translational induction of heat shock transcription factor sigma32: evidence for a built-in RNA thermosensor. Genes Dev. 1999, 13:655-665.
-
(1999)
Genes Dev.
, vol.13
, pp. 655-665
-
-
Morita, M.T.1
Tanaka, Y.2
Kodama, T.S.3
Kyogoku, Y.4
Yanagi, H.5
Yura, T.6
-
56
-
-
0027426883
-
Conformational analysis of the 5′ leader and the gag initiation site of Mo-MuLV RNA and allosteric transitions induced by dimerization
-
Mougel M., Tounekti N., Darlix J.L., Paoletti J., Ehresmann B., Ehresmann C. Conformational analysis of the 5′ leader and the gag initiation site of Mo-MuLV RNA and allosteric transitions induced by dimerization. Nucleic Acids Res. 1993, 21:4677-4684.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4677-4684
-
-
Mougel, M.1
Tounekti, N.2
Darlix, J.L.3
Paoletti, J.4
Ehresmann, B.5
Ehresmann, C.6
-
58
-
-
33645004378
-
Controlling RNA self-assembly to form filaments
-
Nasalean L., Baudrey S., Leontis N.B., Jaeger L. Controlling RNA self-assembly to form filaments. Nucleic Acids Res. 2006, 34:1381-1392.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 1381-1392
-
-
Nasalean, L.1
Baudrey, S.2
Leontis, N.B.3
Jaeger, L.4
-
59
-
-
24044543111
-
A network of orthogonal ribosome-mRNA pairs
-
Rackham O., Chin J.W. A network of orthogonal ribosome-mRNA pairs. Nat. Chem. Biol. 2005, 1:159-166.
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 159-166
-
-
Rackham, O.1
Chin, J.W.2
-
60
-
-
29344453148
-
Cellular logic with orthogonal ribosomes
-
Rackham O., Chin J.W. Cellular logic with orthogonal ribosomes. J. Am. Chem. Soc. 2005, 127:17584-17585.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 17584-17585
-
-
Rackham, O.1
Chin, J.W.2
-
61
-
-
0025332385
-
Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA
-
Robertson D.L., Joyce G.F. Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nature 1990, 344:467-468.
-
(1990)
Nature
, vol.344
, pp. 467-468
-
-
Robertson, D.L.1
Joyce, G.F.2
-
62
-
-
0032955410
-
In vitro selection of an allosteric ribozyme that transduces analytes to amplicons
-
Robertson M.P., Ellington A.D. In vitro selection of an allosteric ribozyme that transduces analytes to amplicons. Nat. Biotechnol. 1999, 17:62-66.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 62-66
-
-
Robertson, M.P.1
Ellington, A.D.2
-
63
-
-
0037337009
-
RNA sequences that work as transcriptional activating regions
-
Saha S., Ansari A.Z., Jarrell K.A., Ptashne M. RNA sequences that work as transcriptional activating regions. Nucleic Acids Res. 2003, 31:1565-1570.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1565-1570
-
-
Saha, S.1
Ansari, A.Z.2
Jarrell, K.A.3
Ptashne, M.4
-
65
-
-
0021776306
-
A theory of alternative designs for biochemical control systems
-
Savageau M.A. A theory of alternative designs for biochemical control systems. Biomed. Biochim. Acta 1985, 44:875-880.
-
(1985)
Biomed. Biochim. Acta
, vol.44
, pp. 875-880
-
-
Savageau, M.A.1
-
66
-
-
0021777396
-
Mathematics of organizationally complex systems
-
Savageau M.A. Mathematics of organizationally complex systems. Biomed. Biochim. Acta 1985, 44:839-844.
-
(1985)
Biomed. Biochim. Acta
, vol.44
, pp. 839-844
-
-
Savageau, M.A.1
-
67
-
-
0031904590
-
Demand theory of gene regulation. I. Quantitative development of the theory
-
Savageau M.A. Demand theory of gene regulation. I. Quantitative development of the theory. Genetics 1998, 149:1665-1676.
-
(1998)
Genetics
, vol.149
, pp. 1665-1676
-
-
Savageau, M.A.1
-
68
-
-
0017140445
-
Codon-dependent rearrangement of the three-dimensional structure of phenylalanine tRNA, exposing the T-psi-C-G sequence for binding to the 50S ribosomal subunit
-
Schwarz U., Menzel H.M., Gassen H.G. Codon-dependent rearrangement of the three-dimensional structure of phenylalanine tRNA, exposing the T-psi-C-G sequence for binding to the 50S ribosomal subunit. Biochemistry 1976, 15:2484-2490.
-
(1976)
Biochemistry
, vol.15
, pp. 2484-2490
-
-
Schwarz, U.1
Menzel, H.M.2
Gassen, H.G.3
-
69
-
-
38849128863
-
In silico genetic robustness analysis of microRNA secondary structures: potential evidence of congruent evolution in microRNA
-
Shu W., Bo X., Ni M., Zheng Z., Wang S. In silico genetic robustness analysis of microRNA secondary structures: potential evidence of congruent evolution in microRNA. BMC Evol. Biol. 2007, 7:223.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 223
-
-
Shu, W.1
Bo, X.2
Ni, M.3
Zheng, Z.4
Wang, S.5
-
71
-
-
55949087147
-
In silico genetic robustness analysis of secondary structural elements in the miRNA gene
-
Shu W., Ni M., Bo X., Zheng Z., Wang S. In silico genetic robustness analysis of secondary structural elements in the miRNA gene. J. Mol. Evol. 2008, 67:560-569.
-
(2008)
J. Mol. Evol.
, vol.67
, pp. 560-569
-
-
Shu, W.1
Ni, M.2
Bo, X.3
Zheng, Z.4
Wang, S.5
-
73
-
-
28544440364
-
Reconstruction of genetic circuits
-
Sprinzak D., Elowitz M.B. Reconstruction of genetic circuits. Nature 2005, 438:443-448.
-
(2005)
Nature
, vol.438
, pp. 443-448
-
-
Sprinzak, D.1
Elowitz, M.B.2
-
74
-
-
0033010430
-
An RNA switch at the 5′ splice site requires ATP and the DEAD box protein Prp28p
-
Staley J.P., Guthrie C. An RNA switch at the 5′ splice site requires ATP and the DEAD box protein Prp28p. Mol. Cell 1999, 3:55-64.
-
(1999)
Mol. Cell
, vol.3
, pp. 55-64
-
-
Staley, J.P.1
Guthrie, C.2
-
75
-
-
4544346660
-
Robustness of cellular functions
-
Stelling J., Sauer U., Szallasi Z., Doyle F.J., Doyle J. Robustness of cellular functions. Cell 2004, 118:675-685.
-
(2004)
Cell
, vol.118
, pp. 675-685
-
-
Stelling, J.1
Sauer, U.2
Szallasi, Z.3
Doyle, F.J.4
Doyle, J.5
-
76
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz G. An expanding universe of noncoding RNAs. Science 2002, 296:1260-1263.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
77
-
-
0019979841
-
Transcript secondary structures regulate transcription termination at the attenuator of S. marcescens tryptophan operon
-
Stroynowski I., Yanofsky C. Transcript secondary structures regulate transcription termination at the attenuator of S. marcescens tryptophan operon. Nature 1982, 298:34-38.
-
(1982)
Nature
, vol.298
, pp. 34-38
-
-
Stroynowski, I.1
Yanofsky, C.2
-
78
-
-
2542601538
-
A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
-
Suess B., Fink B., Berens C., Stenz R., Hillen W. A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo. Nucleic Acids Res. 2004, 32:1610-1614.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1610-1614
-
-
Suess, B.1
Fink, B.2
Berens, C.3
Stenz, R.4
Hillen, W.5
-
79
-
-
0642367619
-
Group I aptazymes as genetic regulatory switches
-
Thompson K.M., Syrett H.A., Knudsen S.M., Ellington A.D. Group I aptazymes as genetic regulatory switches. BMC Biotechnol. 2002, 2:21.
-
(2002)
BMC Biotechnol.
, vol.2
, pp. 21
-
-
Thompson, K.M.1
Syrett, H.A.2
Knudsen, S.M.3
Ellington, A.D.4
-
80
-
-
0026557046
-
Effect of dimerization on the conformation of the encapsidation Psi domain of Moloney murine leukemia virus RNA
-
Tounekti N., Mougel M., Roy C., Marquet R., Darlix J.L., Paoletti J., Ehresmann B., Ehresmann C. Effect of dimerization on the conformation of the encapsidation Psi domain of Moloney murine leukemia virus RNA. J. Mol. Biol. 1992, 223:205-220.
-
(1992)
J. Mol. Biol.
, vol.223
, pp. 205-220
-
-
Tounekti, N.1
Mougel, M.2
Roy, C.3
Marquet, R.4
Darlix, J.L.5
Paoletti, J.6
Ehresmann, B.7
Ehresmann, C.8
-
81
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
-
Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 1990, 249:505-510.
-
(1990)
Science
, vol.249
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
82
-
-
0034644270
-
The segment polarity network is a robust developmental module
-
von Dassow G., Meir E., Munro E.M., Odell G.M. The segment polarity network is a robust developmental module. Nature 2000, 406:188-192.
-
(2000)
Nature
, vol.406
, pp. 188-192
-
-
von Dassow, G.1
Meir, E.2
Munro, E.M.3
Odell, G.M.4
-
83
-
-
0018500287
-
Chemical evidence for a codon-induced allosteric change in tRNALys involving the 7-methylguanosine residue 46
-
Wagner R., Garrett R.A. Chemical evidence for a codon-induced allosteric change in tRNALys involving the 7-methylguanosine residue 46. Eur. J. Biochem. 1979, 97:615-621.
-
(1979)
Eur. J. Biochem.
, vol.97
, pp. 615-621
-
-
Wagner, R.1
Garrett, R.A.2
-
84
-
-
0025113767
-
Binding of initiation factor 2 and initiator tRNA to the Escherichia coli 30S ribosomal subunit induces allosteric transitions in 16S rRNA
-
Wakao H., Romby P., Laalami S., Ebel J.P., Ehresmann C., Ehresmann B. Binding of initiation factor 2 and initiator tRNA to the Escherichia coli 30S ribosomal subunit induces allosteric transitions in 16S rRNA. Biochemistry 1990, 29:8144-8151.
-
(1990)
Biochemistry
, vol.29
, pp. 8144-8151
-
-
Wakao, H.1
Romby, P.2
Laalami, S.3
Ebel, J.P.4
Ehresmann, C.5
Ehresmann, B.6
-
86
-
-
0027193847
-
Movement of the guide sequence during RNA catalysis by a group I ribozyme
-
Wang J.F., Downs W.D., Cech T.R. Movement of the guide sequence during RNA catalysis by a group I ribozyme. Science 1993, 260:504-508.
-
(1993)
Science
, vol.260
, pp. 504-508
-
-
Wang, J.F.1
Downs, W.D.2
Cech, T.R.3
-
87
-
-
0032554635
-
Binding of neomycin to the TAR element of HIV-1 RNA induces dissociation of Tat protein by an allosteric mechanism
-
Wang S., Huber P.W., Cui M., Czarnik A.W., Mei H.Y. Binding of neomycin to the TAR element of HIV-1 RNA induces dissociation of Tat protein by an allosteric mechanism. Biochemistry 1998, 37:5549-5557.
-
(1998)
Biochemistry
, vol.37
, pp. 5549-5557
-
-
Wang, S.1
Huber, P.W.2
Cui, M.3
Czarnik, A.W.4
Mei, H.Y.5
-
88
-
-
0032500736
-
Controlling gene expression in living cells through small molecule-RNA interactions
-
Werstuck G., Green M.R. Controlling gene expression in living cells through small molecule-RNA interactions. Science 1998, 282:296-298.
-
(1998)
Science
, vol.282
, pp. 296-298
-
-
Werstuck, G.1
Green, M.R.2
-
89
-
-
0032853242
-
In vitro selection of functional nucleic acids
-
Wilson D.S., Szostak J.W. In vitro selection of functional nucleic acids. Annu. Rev. Biochem. 1999, 68:611-647.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 611-647
-
-
Wilson, D.S.1
Szostak, J.W.2
-
90
-
-
62649171253
-
Frameworks for programming biological function through RNA parts and devices
-
Win M.N., Liang J.C., Smolke C.D. Frameworks for programming biological function through RNA parts and devices. Chem. Biol. 2009, 16:298-310.
-
(2009)
Chem. Biol.
, vol.16
, pp. 298-310
-
-
Win, M.N.1
Liang, J.C.2
Smolke, C.D.3
-
91
-
-
0020709956
-
Effect of Escherichia coli initiation factors on the kinetics of N-Acphe-tRNAPhe binding to 30S ribosomal subunits. A fluorescence stopped-flow study
-
Wintermeyer W., Gualerzi C. Effect of Escherichia coli initiation factors on the kinetics of N-Acphe-tRNAPhe binding to 30S ribosomal subunits. A fluorescence stopped-flow study. Biochemistry 1983, 22:690-694.
-
(1983)
Biochemistry
, vol.22
, pp. 690-694
-
-
Wintermeyer, W.1
Gualerzi, C.2
-
92
-
-
4644275337
-
Exogenous control of mammalian gene expression through modulation of RNA self-cleavage
-
Yen L., Svendsen J., Lee J.S., Gray J.T., Magnier M., Baba T., D'Amato R.J., Mulligan R.C. Exogenous control of mammalian gene expression through modulation of RNA self-cleavage. Nature 2004, 431:471-476.
-
(2004)
Nature
, vol.431
, pp. 471-476
-
-
Yen, L.1
Svendsen, J.2
Lee, J.S.3
Gray, J.T.4
Magnier, M.5
Baba, T.6
D'Amato, R.J.7
Mulligan, R.C.8
-
93
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker M., Stiegler P. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 1981, 9:133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|