Translational induction of heat shock transcription factor σ32: Evidence for a built-in RNA thermosensor

Genes and Development

Volumn 13, Issue 6, 1999, Pages 655-665

  Morita, Miyo Terao ^a   Tanaka, Yoshiyuki ^b   Kodama, Takashi S ^b   Kyogoku, Yoshimasa ^b   Yanagi, Hideki ^a   Yura, Takashi ^a  

^a HSP Research Institute   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

Heat shock response; rpoH; Thermosensor; Translational regulation; 32

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; ESCHERICHIA COLI; GENETIC STABILITY; HEAT SHOCK; NONHUMAN; PRIORITY JOURNAL; RNA SEQUENCE; THERMORECEPTOR; TRANSLATION REGULATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; UNIDENTIFIED BACTERIOPHAGE;

EID: 0001641104     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.13.6.655     Document Type: Article

References (46)

1. Brunel, C., P. Romby, C. Sacerdot, M. de Smit, M. Graffe, J. Dondon, J. van Duin, B. Ehresmann, C. Ehresmann, and M. Springer. 1995. Stabilised secondary structure at a ribosomal binding site enhances translational repression in E. coli. J. Mol. Biol. 253: 277-290.
2. Bukau, B. 1993. Regulation of the Escherichia coli heat-shock response. Mol. Microbiol. 9: 671-680.
3. Casadaban, M.J. 1976. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J. Mol. Biol. 104: 541-555.
4. Craig, E.A. and C.A. Gross. 1991. Is hsp70 the cellular thermometer? Trends Biochem. Sci. 16: 135-140.
5. de Smit, M.H. and J. van Duin. 1990a. Secondary structure of the ribosome binding site determines translational efficiency: A quantitative analysis. Proc. Natl. Acad. Sci. 87: 7668-7672.
6. de Smit, M.H. and J. van Duin. 1990b. Control of prokaryotic translational initiation by mRNA secondary structure. Prog. Nucleic Acid Res. Mol. Biol. 38: 1-35.
7. Georgopoulos, C., K. Liberek, M. Zylicz, and D. Ang. 1994. Properties of the heat shock proteins of Escherichia coh and the autoregulation of the heat shock response. In The biology of heat shock proteins and molecular chaperones (ed. R.I. Morimoto, A. Tissieres, and C. Georgopoulos), pp. 209-249. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
8. Goff, S.A. and A.L. Goldberg. 1985. Production of abnormal proteins in E. coli stimulates transcription of Ion and other heat shock genes. Cell 41: 587-595.
9. Gold, L. 1988 Posttranscriptional regulatory mechanisms in Escherichia coli. Annu. Rev. Biochem. 57: 199-233.
10. Groeneveld, H., K. Thimon, and J. Van Duin. 1995. Translational control of maturation-protein synthesis in phage MS2: A role for the kinetics of RNA folding? RNA 1: 79-88.
11. Gross, C.A. 1996. Function and regulation of the heat shock proteins. In Escherichia coli and Salmonella: Cellular and molecular biology (ed. F.C. Neidhardt, R. Curtis III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger), pp. 1382-1399. ASM Press, Washington, D.C.
12. 32 synthesis can regulate the synthesis of heat shock proteins in Escherichia coli. Genes & Dev. 1: 179-184.
13. Hartz, D., D.S. McPheeters, R. Traut, and L. Gold. 1988. Extension inhibition analysis of translation initiation complexes. Methods Enzymol. 164: 419-425.
14. Hendrick, J.P. and F.U. Hartl. 1993. Molecular chaperone functions of heat-shock proteins. Annu. Rev. Biochem. 62: 349-384.
15. Hoe, N.P. and J.D. Goguen. 1993. Temperature sensing in Yersinia pestis: Translation of the LcrF activator protein is thermally regulated. J. Bacteriol. 175: 7901-7909.
16. Hurme, R., K.D. Berndt, S.J. Normark, and M. Rhen. 1997. A proteinaceous gene regulatory thermometer in Salmonella. Cell 90: 55-64.
17. 32 synthesis: Requirement for an internal control element. J. Bacteriol. 173: 3904-3906.
18. 32 in Escherichia coli. J. Bacteriol. 176: 5648-5653.
19. Kodama, T.S., Y. Kyogoku, and H. Sugeta. 1997. A novel method for estimating thermodynamic parameters in multi-equilibrium system by global analysis of spectrophotometric data. In Spectroscopy of biological molecules: Modern trends (ed. P. Carmona, R. Navarro, and A. Hernanz), pp. 577-578. Kluwer Academic Publishers, The Netherlands.
20. Kodama, T.S., Y. Tanaka, K. Yasuno, K. Teruya, N. Oda, H. Sugeta, and Y. Kyogoku. 1998. Systematic errors of CD spectra in thermodynamic analysis of nucleic acids. Nucleic Acids Symp. Ser. 39: 61-62.
21. Miller, J. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
22. 32 on treatment with inhibitors of DNA gyrase in Escherichia coli. Mol. & Gen. Genet. 253: 297-302.
23. Morimoto, R.I., D.A. Jurivich, P.E. Kroeger, S.K. Msthr, S.P. Murphy, A. Nakai, K. Sarge, K. Abravaya, and L.T. Sistonen. 1994. Regulation of heat shock gene transcription by a family of heat shock factors. In The biology of heat shock proteins and molecular chaperones (ed. R.I. Morimoto, A. Tissieres, and C. Georgopoulos). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
24. 32 in Escherichia coli: Structural and functional dissection of rpoH mRNA secondary structure. J. Bacteriol. 181: 401-410.
25. 32 synthesis during the heat shock response of Escherichia coli. Proc. Natl. Acad. Sci. 88: 10515-10519.
26. 32 polypeptide is involved in DnaK-mediated negative control of the heat shock response in Escherichia coli. Proc. Natl. Acad. Sci. 91: 10280-10284.
27. 32 homologs from gram negative bacteria; Conserved mRNA and protein segments for heat shock regulation. Nucleic Acids Res. 23: 4383-4390.
28. Nakahigashi, K., H. Yanagi, and T. Yura. 1998. Regulatory conservation and divergence of σ32 homologs from gram-negative bacteria: Serratia marcescens, Proteus mirabils, Pesudomonas aeruginosa, and Agrobacterium tumefaciens. J. Bacteriol. 180: 2402-2408.
29. Petersheim, M. and D.H. Turner. 1983. Base-stacking and base-pairing contributions to helix stability: Thermodynamics of double-helix formation with CCGC, CCGGp, CCG-GAp, ACCGGp, CCGGUp, and ACCGGUp. Biochemistry 22: 256-263.
30. Poot, R.A., N.V. Tsareva, I.E. Boni, and J. Van Duin. 1997. RNA folding kinetics regulate translation of phage MS2 maturation gene. Proc. Natl. Acad. Sci. 94: 10110-10115.
31. Powell, B.S., D.L. Court, Y. Nakamura, M.P. Rivas, and C.L. Turnbough, Jr. 1994. Rapid confirmation of single copy lambda prophage integration by PCR. Nucleic Acids Res. 22: 5765-5766.
32. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
33. Spedding, G. and D. Draper. 1993. Allosteric mechanism for translational repression in the E. coli a operon. Proc. Natl. Acad. Sci. 90: 4399-4403.
34. Sprengart, M.L., H.P. Fatscher, and E. Fuchs. 1990. The initiation of translation in E. coli: Apparent base pairing between the 16S rRNA and downstream sequences of the mRNA. Nucleic Acids Res. 18: 1719-1723.
35. Springer, M. 1996. Translational control of gene expression in E. coli and bacteriophage. In Regulation of gene expression in E. coli and Bacterophage (ed. E.C.C. Lin and A. Simon Lynch), pp. 85-126. R.G. Landes Company, Austin, TX.
36. St. Pierre, R. and T. Linn. 1996. A refined vector system for the in vitro construction of single-copy transcriptional or translational fusions to lacZ. Gene 169: 65-68.
37. 32. Nature 329: 348-351.
38. 32. Genes & Dev. 4: 2202-2209.
39. Tilly, K., N. McKittrick, M. Zylicz, and C. Georgopoulos. 1983. The dnaK protein modulates the heat-shock response of Escherichia coli. Cell 34: 641-646.
40. Tilly, K., J. Spence, and C. Georgopoulos. 1989. Modulation of stability of the Escherichia coli heat shock regulatory factor sigma 32. J. Bacteriol. 171: 1585-1589.
41. Wada, A. 1989. Analysis of Escherichia coli ribosomal proteins by an improved two dimensional gel eletrophoresis. I. Detection of four new proteins. J. Biochem. 100: 1583-1594.
42. Wild, J., W.A. Walter, C.A. Gross, and E. Altman. 1993. Accumulation of secretory protein precursors in Escherichia coli induces the heat shock response. J. Bacteriol. 175: 3992-3997.
43. Yura, T., H. Nagai, and H. Mori. 1993. Regulation of the heat-shock response in bacteria. Annu. Rev. Microbiol. 47: 321-350.
44. 32 synthesis mediated by mRNA secondary structure: A primary step of the heat shock response in Escherichia coli. Nucleic Acids Res. 21: 5449-5455.
45. Zhong, M., A. Orosz, and C. Wu. 1998. Direct sensing of heat and oxidation by Drosophila heat shock transcription factor. Mol. Cell 2: 101-108.
46. Zuker, M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244: 48-52.