Identification of moderately halophilic bacteria from Thai fermented fish (pla-ra) and proposal of Virgibacillus siamensis sp. nov

Journal of General and Applied Microbiology

Volumn 56, Issue 5, 2010, Pages 369-379

  Tanasupawat, Somboon ^a   Chamroensaksri, Nitcha ^a   Kudo, Takuji ^b   Itoh, Takashi ^b  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

Bacillus; Chromohalobacter; Fermented fish; Halophile; Virgibacillus

Indexed keywords

CARDIOLIPIN; GLYCOLIPID; PHOSPHATIDYLGLYCEROL; RNA 16S;

ARTICLE; BACILLUS; BACILLUS VIETNAMNENSIS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHROMOHALOBACTER; CHROMOHALOBACTER SALEXIGENS; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; FERMENTED PRODUCT; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; HALOPHILIC BACTERIUM; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENETIC TREE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; SPECIES DIVERSITY; STRAIN IDENTIFICATION; UNINDEXED SEQUENCE; VIRGIBACILLUS CARMONENSIS; VIRGIBACILLUS DOKDONENSIS; VIRGIBACILLUS HALODENITRIFICANS; VIRGIBACILLUS MARISMORTUI; VIRGIBACILLUS SIAMENSIS;

ANIMALS; FERMENTATION; FISH PRODUCTS; FISHES; FOOD MICROBIOLOGY; PHYLOGENY; THAILAND; VIRGIBACILLUS;

BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); CHROMOHALOBACTER; CHROMOHALOBACTER SALEXIGENS; NEGIBACTERIA; POSIBACTERIA; VIRGIBACILLUS; VIRGIBACILLUS CARMONENSIS; VIRGIBACILLUS DOKDONENSIS; VIRGIBACILLUS HALODENITRIFICANS; VIRGIBACILLUS MARISMORTUI;

EID: 78649341627     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.56.369     Document Type: Article

References (30)

1. Arahal, D. R., Marquez, M. C., Volcani, B. E., Schleifer, K. H., and Ventosa, A. (1999) Bacillus marismortui sp. nov., a new moderately halophilic species from the Dead Sea. Int. J. Syst. Bacteriol., 49, 521-530.
2. Arahal, D. R., Garcia, M. T., Vargas, C., Canovas, D., Nieto, J. J., and Ventosa, A. (2001) Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043T and ATCC 33174T. Int. J. Syst. Evol. Microbiol., 51, 1457-1462.
3. Barrow, G. I. and Feltham, R. K. A. (1993) Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd ed., Cambridge University Press, Cambridge, 331 pp.
4. Chamroensaksri, N., Tanasupawat, S., Akaracharunya, A., Visessanguan, W., Kudo, T., and Itoh, T. (2009) Salinivibrio siamensis sp. nov., from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol., 59, 880-885.
5. Chamroensaksri, N., Tanasupawat, S., Akaracharunya, A., Visessanguan, W., Kudo, T., and Itoh, T. (2010) Gracilibacillus thailandensis sp. nov., from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol., 60, 944-948.
6. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid?deoxyribonucleic acid hybridization saltern in Korea. Int. J. Syst. Evol. Microbiol., 58, 45-49.
7. Lee, J.-C., Li, W.-J., Xu, L.-H., Jian, C.-L., and Kim, C.-J. (2008b) Lentibacillus salis sp. nov., a moderately halophilic bacterium isolated from a salt lake. Int. J. Syst. Evol. Microbiol., 58, 1838-1843.
8. Lee, J.-S., Lim, J.-M., Lee, K. C., Lee, J.-C., Park, Y.-H., and Kim, C.-J. (2006) Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int. J. Syst. Evol. Microbiol., 56, 251-257.
9. Leifson, E. (1963) Determination of carbohydrate metabolism of marine bacteria. J. Bacteriol., 85, 1183-1184.
10. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A., and Parlett, J. H. (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods, 2, 233-241.
11. Namwong, S., Tanasupawat, S., Lee, K. C., and Lee, J.-S. (2009) Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol., 59, 2254-2259.
12. Namwong, S., Tanasupawat, S., Smitinont, T., Visessanguan, W., Kudo, T., and Itoh, T. (2005) Isolation of Lentibacillus salicampi strains and Lentibacillus juripiscarius sp. nov., from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol., 55, 315-320.
13. Noguchi, H.,Uchino, M., Shida, O., Takano, K., Nakamura, L. K., and Komagata, K. (2004) Bacillus vietnamensis sp. nov., a moderately halotolerant, aerobic, endospore-forming bacterium isolated from Vietnamese fish sauce. Int. J. Syst. Evol. Microbiol., 54, 2117-2120.
14. Pakdeeto, A., Tanasupawat, S., Thawai, C., Moonmangmee, S., Kudo, T., and Itoh, T. (2007a) Lentibacillus kapialis sp. nov., from fermented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol., 57, 364-369.
15. Pakdeeto, A., Tanasupawat, S., Thawai, C., Moonmangmee, S., Kudo, T., and Itoh, T. (2007b) Salinicoccus siamensis sp. nov., isolated from fermented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol., 57, 2004-2008.
16. Perrière, G. and Gouy, M. (1996)WWW-Query: An on-line retrieval system for biological sequence banks. Biochimie, 78, 364-369.
17. Saito, H. and Miura, K. (1963) Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim. Biophys. Acta, 72, 619-629.
18. Saitou, N. and Nei, M. (1987) The neighboring-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
19. Sasser, M. (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101, MIDI, Inc., Newark, DE.
20. Tamaoka, J. and Komagata, K. (1984) Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol. Lett., 25, 125-128.
21. Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA 4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24, 1596-1599.
22. Tanasupawat, S., Namwong, S., Kudo, T., and Itoh, T. (2007) Piscibacillus salipiscarius gen. nov., sp. nov., a moderately halophilic bacterium from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol., 57, 1413-1417.
23. Tanasupawat, S., Pakdeeto, A., Namwong, S., Thawai, C., Kudo, T., and Itoh, T. (2006) Lentibacillus halophilus sp. nov., from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol., 56, 1859-1863.
24. Thompson, J. D., Higgins D. G., and Gibson, T. J. (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
25. Thongsanit, J., Tanasupawat, S., Keeratipibul, S., and Jatikavanich, S. (2002) Characterization and identification of Tetragenococcus halophilus and Tetragenococcus muriaticus strains from fish sauce (nam-pla). Jpn. J. Lactic Acid Bacteria, 13, 46-52.
26. Thornley, M. J. (1960) The differentiation of Pseudomonas from other Gram-negative bacteria on the basis of arginine metabolism. J. Appl. Bacteriol., 23, 37-52.
27. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E., Stackebrandt, E., Starr, M. P., and Trüper, H. G. (1987) International Committee on Systematic Bacteriology. Report of the Ad Hoc committee on the reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol., 37, 463-464.
28. Yoon, J.-H., Kang, S.-J., Lee, S.-Y., Lee, M.-H., and Oh, T.-K. (2005) Virgibacillus dokdonensis sp. nov., isolated from a Korean Island, Dokdo, located at the edge of the East Sea in Korea. Int. J. Syst. Evol. Microbiol., 55, 1833-1837.
29. Yoon, J.-H., Oh, T.-K., and Park, Y.-H. (2004) Transfer of Bacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov. Int. J. Syst. Evol. Microbiol., 54, 2163-2167.
30. Yoon, J.-H., Weiss, N., Lee, K. C., Lee, I. S., Kang, K. H., and Park, Y.-H. (2001) Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with Llysine in the cell wall, and reclassification of Bacillus marinus Rüger 1983 as Marinibacillus marinus gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol., 51, 2087-2093.