Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 9, 2009, Pages 2254-2259

  Namwong, Sirilak ^a   Tanasupawat, Somboon ^b   Lee, Keun Chul ^c   Lee, Jung Sook ^c  

^a SUAN SUNANDHA RAJABHAT UNIVERSITY   (Thailand)

^b CHULALONGKORN UNIVERSITY   (Thailand)

^c Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DIAMINOPIMELIC ACID; FATTY ACID; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; RNA 16S; SODIUM CHLORIDE; BACTERIAL DNA; FARNOQUINONE; PHOSPHOLIPID; RIBOSOME DNA;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENETIC SIMILARITY; GRAM POSITIVE BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; OCEANOBACILLUS KAPIALIS; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SHRIMP; BACILLACEAE; BACTERIUM IDENTIFICATION; CELL WALL; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA SEQUENCE; FOOD CONTROL; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PH; PHYLOGENY; SCANNING ELECTRON MICROSCOPY; TEMPERATURE; THAILAND;

BACTERIA (MICROORGANISMS); DECAPODA (CRUSTACEA); OCEANOBACILLUS; POSIBACTERIA;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CELL WALL; CLUSTER ANALYSIS; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FOOD MICROBIOLOGY; HYDROGEN-ION CONCENTRATION; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; TEMPERATURE; THAILAND; VITAMIN K 2;

EID: 70350491042     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.007161-0     Document Type: Article

References (51)

1. Albert, R. A., Archambault, J., Rosselló-Mora, R., Tindall, B. J. & Matheny, M. (2005). Bacillus acidicola sp. nov., a novel mesophilic, acidophilic species isolated from acidic Sphagnum peat bogs in Wisconsin. Int J Syst Evol Microbiol 55, 2125-2130.
2. Barrow, G. I. & Feltham, R. K. A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Forbes, L. (1981). Rapid flagella stain. J Clin Microbiol 13, 807-809.
6. García, M. T., Gallego, V., Ventosa, A. & Mellado, E. (2005). Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacterium. Int J Syst Evol Microbiol 55, 1789-1795.
7. Hao, M. V., Kocur, M. & Komagata, K. (1984). Marinococcus gen. nov., a new genus for motile cocci with meso-diaminopimelic acid in the cell wall; and Marinococcus albus sp. nov. and Marinococcus halophilus (Novitsky and Kushner) comb. nov. J Gen Appl Microbiol 30, 449-459.
8. Heyndrickx, M., Lebbe, L., Kersters, K., De Vos, P., Forsyth, G. & Logan, N. A. (1998). Virgibacillus: a new genus to accommodate Bacillus panthothenticus (Proom and Knight 1950). Emended description of Virgibacillus panthothenticus. Int J Syst Bacteriol 48, 99-106.
9. Heyrman, J., Logan, N. A., Busse, H.-J., Balcaen, A., Lebbe, L., Rodriguez-Diaz, M., Swings, J. & De Vos, P. (2003). Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. Int J Syst Evol Microbiol 53, 501-511.
10. Hucker, G. J. & Conn, H. J. (1923). Method of Gram staining. N Y State Agric Exp Stn Tech Bull 93, 3-37.
11. Ishikawa, M., Ishizaki, S., Yamamoto, Y. & Yamasato, K. (2002). Paraliobacillus ryukyuensis gen. nov., sp. nov., a new Gram-positive, slightly halophilic, extremely halotolerant, facultative anaerobe isolated from a decomposing marine alga. J Gen Appl Microbiol 48, 269-279.
12. Ishikawa, M., Nakajima, K., Itamiya, Y., Furukawa, S., Yamamoto, Y. & Yamasato, K. (2005). Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1. Int J Syst Evol Microbiol 55, 2427-2439.
13. Jeon, C. O., Lim, J.-M., Lee, J.-M., Xu, L.-H., Jiang, C.-L. & Kim, C.-J. (2005). Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55, 1891-1896.
14. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
15. Kim, Y. G., Choi, D. H., Hyun, S. & Cho, B. C. (2007). Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core. Int J Syst Evol Microbiol 57, 409-413.
16. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
17. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
18. Lee, J.-S., Lim, J.-M., Lee, K. C., Lee, J.-C., Park, Y.-H. & Kim, C.-J. (2006). Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int J Syst Evol Microbiol 56, 251-257.
19. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
20. Lim, J.-M., Jeon, C. O., Song, S. M. & Kim, C.-J. (2005). Pontibacillus chungwhensis gen. nov., sp. nov., a moderately halophilic Gram-positive bacterium from a solar saltern in Korea. Int J Syst Evol Microbiol 55, 165-170.
21. Lu, J., Nogi, Y. & Takami, H. (2001). Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol Lett 205, 291-297.
22. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
23. Nakamura, K., Haruta, S., Ueno, S., Ishii, M., Yokota, A. & Igarashi, Y. (2004). Cerasibacillus quisquiliarum gen. nov., sp. nov., isolated from a semi-continuous decomposing system of kitchen refuse. Int J Syst Evol Microbiol 54, 1063-1069.
24. Nam, J.-H., Bae, W. & Lee, D.-H. (2008). Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea. Int J Syst Evol Microbiol 58, 1109-1113.
25. Namwong, S., Tanasupawat, S., Smitinont, T., Visessanguan, W., Kudo, T. & Itoh, T. (2005). Isolation of Lentibacillus salicampi strains and Lentibacillus juripiscarius sp. nov. from fish sauce in Thailand. Int J Syst Evol Microbiol 55, 315-320.
26. Niimura, Y., Koh, E., Yanagida, F., Suzuki, K.-I., Komagata, K. & Kozaki, M. (1990). Amphibacillus xylanus gen. nov., sp. nov., a facultatively anaerobic sporeforming xylan-digesting bacterium which lacks cytochrome, quinone, and catalase. Int J Syst Bacteriol 40, 297-301.
27. Phithakpol, B., Varanyanond, W., Reungmaneepaitoon, S. & Wood, H. (1995). The Traditional Fermented Foods of Thailand. Kuala Lumpur: ASEAN Food Handling Bureau Level 3.
28. Raats, D. & Halpern, M. (2007). Oceanobacillus chironomi sp. nov., a halotolerant and facultatively alkaliphilic species isolated from a chironomid egg mass. Int J Syst Evol Microbiol 57, 255-259.
29. Ren, P.-G. & Zhou, P.-J. (2005a). Tenuibacillus multivorans gen. nov., sp. nov., a moderately halophilic bacterium isolated from saline soil in Xin-Jiang, China. Int J Syst Evol Microbiol 55, 95-99.
30. Ren, P.-G. & Zhou, P.-J. (2005b). Salinibacillus aidingensis gen. nov., sp. nov. and Salinibacillus kushneri sp. nov., moderately halophilic bacteria isolated from a neutral saline lake in Xin-Jiang, China. Int J Syst Evol Microbiol 55, 949-953.
31. Romano, I., Lama, L., Nicolaus, B., Poli, A., Gambacorta, A. & Giordano, A. (2006). Oceanobacillus oncorhynchi subsp. incaldanensis subsp. nov., an alkalitolerant halophile isolated from an algal mat collected from a sulfurous spring in Campania (Italy), and emended description of Oceanobacillus oncorhynchi. Int J Syst Evol Microbiol 56, 805-810.
32. Saito, H. & Miura, K. I. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
33. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
34. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
35. Satomi, M., Kimura, B., Mizoi, M., Sato, T. & Fujii, T. (1997). Tetragenococcus muriaticus sp. nov., a new moderately halophilic lactic acid bacterium isolated from fermented squid liver sauce. Int J Syst Bacteriol 47, 832-836.
36. Schlesner, H., Lawson, P. A., Collins, M. D., Weiss, N., Wehmeyer, U., Völker, H. & Thomm, M. (2001). Filobacillus milensis gen. nov., sp. nov., a new halophilic spore-forming bacterium with Orn-D-Glu-type peptidoglycan. Int J Syst Evol Microbiol 51, 425-431.
37. Seearunruangchai, A., Tanasupawat, S., Keeratipibul, S., Thawai, C., Itoh, T. & Yamada, Y. (2004). Identification of acetic acid bacteria isolated from fruits collected in Thailand. J Gen Appl Microbiol 50, 47-53.
38. Spring, S., Ludwig, W., Marquez, M. C., Ventosa, A. & Schleifer, K.-H. (1996). Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 46, 492-496.
39. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
40. Tanasupawat, S. & Komagata, K. (2001). Lactic acid bacteria in fermented foods in Southeast Asia. In Microbial Diversity in Asia. Technology and Prospects, pp. 43-59. Edited by B. H. Nga, H. M. Tan & K. Suzuki. Singapore: World Scientific Publishing.
41. Tanasupawat, S., Shida, O., Okada, S. & Komagata, K. (2000). Lactobacillus acidipiscis sp. nov. and Weissella thailandensis sp. nov., isolated from fermented fish in Thailand. Int J Syst Evol Microbiol 50, 1479-1485.
42. Tanasupawat, S., Namwong, S., Kudo, T. & Itoh, T. (2007). Piscibacillus salipiscarius gen. nov., sp. nov., a moderately halophilic bacterium from fermented fish (pla-ra) in Thailand. Int J Syst Evol Microbiol 57, 1413-1417.
43. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
44. Thornley, M. J. (1960). The differentiation of Pseudomonas from other Gram-negative bacteria on the basis of arginine metabolism. J Appl Bacteriol 23, 37-52.
45. Valderrama, M. J., Monteoliva-Sanchez, M., Quesada, E. & Ramos-Cormenzana, A. (1998). Influence of salt concentration on the cellular fatty acid composition of the moderately halophilic bacterium Halomonas salina. Res Microbiol 149, 675-679.
46. Ventosa, A., Garcia, M. T., Kamekura, M., Onishi, H. & Ruiz-Berraquero, F. (1989). Bacillus halophilus sp. nov., a moderately halophilic Bacillus species. Syst Appl Microbiol 12, 162-166.
47. Wainø, M., Tindall, B. J., Schumann, P. & Ingvorsen, K. (1999). Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49, 821-831.
48. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
49. Yoon, J.-H., Kang, K. H. & Park, Y.-H. (2002). Lentibacillus salicampi gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt field in Korea. Int J Syst Evol Microbiol 52, 2043-2048.
50. Yumoto, I., Hirota, K., Nodasaka, Y. & Nakajima, K. (2005). Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus. Int J Syst Evol Microbiol 55, 1521-1524.
51. Zhilina, T. N., Garnova, E. S., Tourova, T. P., Kostrikina, N. A. & Zavarzin, G. A. (2001). Amphibacillus fermentum sp. nov. and Amphibacillus tropicus sp. nov., new alkaliphilic, facultatively anaerobic, saccharolytic bacilli from Lake Magadi. Microbiology 70, 711-722 (English translation of Mikrobiologiia).