Salinicoccus siamensis sp. nov., isolated from fermented shrimp paste in Thailand

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 9, 2007, Pages 2004-2008

  Pakdeeto, Amnat ^a   Tanasupawat, Somboon ^a   Thawai, Chitti ^b   Moonmangmee, Somporn ^c   Kudo, Takuji ^d   Itoh, Takashi ^d  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b KING MONGKUT'S INSTITUTE OF TECHNOLOGY LADKRABANG   (Thailand)

^c THAILAND INSTITUTE OF SCIENTIFIC AND TECHNOLOGICAL RESEARCH   (Thailand)

^d RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CATALASE; CYTOSINE; FARNOQUINONE; GUANINE; MENAQUINONE; OXIDOREDUCTASE; PEPTIDOGLYCAN; RNA 16S; SODIUM CHLORIDE;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; FOOD; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; RNA SEQUENCE; SALINICOCCUS ROSEUS; SALINICOCCUS SIAMENSIS; SEQUENCE ANALYSIS; SHRIMP; STRAIN DIFFERENCE; TEMPERATURE; THAILAND;

AEROBIOSIS; ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CATALASE; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXIDOREDUCTASES; PANDALIDAE; PEPTIDOGLYCAN; PHYLOGENY; PIGMENTS, BIOLOGICAL; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SHELLFISH; SPORES, BACTERIAL; STAPHYLOCOCCACEAE; THAILAND;

DECAPODA (CRUSTACEA); POSIBACTERIA; SALINICOCCUS; SALINICOCCUS ROSEUS;

EID: 34848816033     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64876-0     Document Type: Article

References (30)

1. Barrow, G. I. & Feltham, R. K A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
2. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
4. Forbes, L. (1981). Rapid flagella stain. J Clin Microbiol 13, 807-809.
5. França, L, Rainey, F. A., Nobre, M. F. & da Costa, M. S. (2006). Salinicoccus salsiraiae sp. nov.: A new moderately halophilic gram-positive bacterium isolated from salted skate. Extremophiles 10, 531-536.
6. Hao, M. V., Kocur, M. & Komagata, K. (1984). Marinococcus gen. nov., a new genus for motile cocci with meso-diaminopimelic acid in the cell wall; and Marinococcus albus sp. nov. and Marinococcus halophilus (Novitsky and Kushner) comb. nov. J Gen Appl Microbiol 30, 449-459.
7. Hucker, G. J. & Conn, H. J. (1923). Method of Gram staining. N Y State Agric Exp Stn Tech Bull 93, 3-37.
8. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
9. Komagate, K. & Suzuki, K (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
10. Kumar, S., Tamura, K., Jakobson, I.-B. & Nei, M. (2001). MEGA2: Molecular evolutionary genetic analysis software. Bioinformatics 17, 1244-1245.
11. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
12. Li, W.-J, Schumann, P., Zhang, Y.-Q., Chen, G. Z., Tian, X-P., Xu, L.-H., Stackebrandt, E & Jiang, C.-L. (2005). Marinococcus halotolerans sp. nov., isolated from Qinghai, north-west China. Int J Syst Evol Microbiol 55, 1801-1804.
13. Mŕquez, M. C., Ventosa, A. & Ruíz-Benraquero, F. (1990). Marinococcus hispanicus, a new species of moderately halophilic gram-positive cocci. Int J Syst Bacteriol 40, 165-169.
14. Saito, H. & Miura, K. I. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
17. Satomi, M., Kimura, B., Mizoi, M., Sato, T. & Fujii, T. (1997). Tetragenococcus muriaticus sp. nov., a new moderately halophilic lactic acid bacterium isolated from fermented squid liver sauce. Int J Syst Bacteriol 47, 832-836.
18. Seearunruangchai, A., Tanasupawat S., Keeratipibul, S., Thawai, C, Itoh, T. & Yamada, Y. (2004). Identification of acetic acid bacteria isolated from fruits and related materials collected in Thailand. J Gen Apil Microbiol 50, 47-53.
19. Spring, S., Ludwig, W., Marquez, M. C., Ventosa, A. & Schleifer, K.-H. (1996). Halobacillus gen. nov., with description of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophila comb. nov. Int J Syst Bacteriol 46, 492-496.
20. Stackebrandt, E., Koch, C., Gvozdiak, O. & Schumann, P. (1995). Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. Int J Syst Bacteriol 45, 682-692.
21. Tamaoka, J. S. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
22. Tanasupawat, S., Okada, S., Suzuki, K., Kozaki, M. & Komagata, K. (1993). Lactic acid bacteria, particularly heterofermentative lactobacilli, found in fermented foods in Thailand. Bull JFCC 9, 65-78.
23. Tanasupawat, S., Shida, O., Okada, S. & Komagata, K. (2000). Lactobacillus acidipiscis sp. nov. and Weissella thailandensis sp. nov., isolated from fermented fish in Thailand. Int J Syst Evol Microbiol 50, 1479-1485.
24. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
25. Thornley, M. J. (1960). The differentiation of Pseudomonas from other Gram-negative bacteria on the basis of arginine metabolism. J Appl Bacteriol 23, 37-52.
26. Ventosa, A., Marquez, M. C., Ruiz-Berraquero, F. & Kocur, M. (1990). Salinicoccus roseus gen. nov., sp. nov., a new moderately halophilic Gram-positive coccus. Syst Appl Microbiol 13, 29-33.
27. Ventosa, A., Marquez, M. C., Weiss, N. & Tindall, B. J. (1992). Transfer of Marinococcus hispanicus to the genus Salinicoccus as Salinicoccus hispanicus comb. nov. Syst Appl Microbiol 15, 530-534.
28. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O, Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
29. Yoon, J.-H., Lee, K.-C., Weiss, N., Kang, K. H. & Park, Y.-H. (2003). Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal. Int J Syst Evol Microbiol 53, 595-602.
30. Zhang, W., Xue, Y., Me, Y., Zhou, P., Ventosa, A. & Grant W. D. (2002). Salinicoccus alkaliphilus sp. nov., a novel alkaliphile and moderate halophile from Baer Soda Lake in Inner Mongolia Autonomous Region, China. Int J Syst Evol Microbiol 52, 789-793.