-
1
-
-
33746488809
-
DNA repair: From molecular mechanism to human disease
-
Friedberg, E. C. et al. DNA repair: from molecular mechanism to human disease. DNA Repair (Amst.) 5, 986-996 (2006).
-
(2006)
DNA Repair (Amst.)
, vol.5
, pp. 986-996
-
-
Friedberg, E.C.1
-
4
-
-
0023189690
-
The determination of urinary 3-methyladenine in humans as a potential monitor of exposure to methylating agents
-
Shuker, D. E., Bailey, E., Parry, A., Lamb, J. & Farmer, P. B. The determination of urinary 3-methyladenine in humans as a potential monitor of exposure to methylating agents. Carcinogenesis 8, 959-962 (1987).
-
(1987)
Carcinogenesis
, vol.8
, pp. 959-962
-
-
Shuker, D.E.1
Bailey, E.2
Parry, A.3
Lamb, J.4
Farmer, P.B.5
-
5
-
-
0026673948
-
Relevance of urinary DNA adducts as markers of carcinogen exposure
-
Shuker, D. E. & Farmer, P. B. Relevance of urinary DNA adducts as markers of carcinogen exposure. Chem. Res. Toxicol. 5, 450-460 (1992).
-
(1992)
Chem. Res. Toxicol.
, vol.5
, pp. 450-460
-
-
Shuker, D.E.1
Farmer, P.B.2
-
6
-
-
0022363977
-
Methylation-induced blockstoin vitro DNA replication
-
Larson, K., Sahm, J., Shenkar, R. & Strauss, B.Methylation-induced blockstoin vitro DNA replication. Mutat. Res. 150, 77-84 (1985).
-
(1985)
Mutat. Res.
, vol.150
, pp. 77-84
-
-
Larson, K.1
Sahm, J.2
Shenkar, R.3
Strauss, B.4
-
7
-
-
42449091527
-
Eukaryotic Y-family polymerases bypass a 3-methyl-2'-deoxyadenosine analog in vitro and methyl methanesulfonate-induced DNA damage in vivo
-
Plosky, B. S. et al. Eukaryotic Y-family polymerases bypass a 3-methyl-2'-deoxyadenosine analog in vitro and methyl methanesulfonate-induced DNA damage in vivo. Nucleic Acids Res. 36, 2152-2162 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2152-2162
-
-
Plosky, B.S.1
-
8
-
-
3242727654
-
Biologically relevant chemical reactions of N7-alkylguanine residues in DNA
-
Gates, K. S., Nooner, T. & Dutta, S. Biologically relevant chemical reactions of N7-alkylguanine residues in DNA. Chem. Res. Toxicol. 17, 839-856 (2004).
-
(2004)
Chem. Res. Toxicol.
, vol.17
, pp. 839-856
-
-
Gates, K.S.1
Nooner, T.2
Dutta, S.3
-
9
-
-
4143149415
-
Site-specific DNA damage recognition by enzyme-induced base flipping
-
Stivers, J. T. Site-specific DNA damage recognition by enzyme-induced base flipping. Prog. Nucleic Acid Res. Mol. Biol. 77, 37-65 (2004).
-
(2004)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.77
, pp. 37-65
-
-
Stivers, J.T.1
-
10
-
-
38849207616
-
Extrahelical damaged base recognitionby DNA glycosylase enzymes
-
Stivers, J. T.Extrahelical damaged base recognitionby DNA glycosylase enzymes. Chemistry 14, 786-793 (2008).
-
(2008)
Chemistry
, vol.14
, pp. 786-793
-
-
Stivers, J.T.1
-
11
-
-
0042342532
-
A mechanistic perspectiveonthe chemistryofDNA repair glycosylases
-
Stivers, J.T. & Jiang, Y. L.A mechanistic perspectiveonthe chemistryofDNA repair glycosylases. Chem. Rev. 103, 2729-2760 (2003).
-
(2003)
Chem. Rev.
, vol.103
, pp. 2729-2760
-
-
Stivers, J.T.1
Jiang, Y.L.2
-
12
-
-
0034625082
-
Uracil-DNA glycosylase-DNA substrate and product structures: Conformational strain promotes catalytic efficiency by coupled stereoelectronic effects
-
Parikh, S. S. et al. Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. Proc. Natl Acad. Sci. USA 97, 5083-5088 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 5083-5088
-
-
Parikh, S.S.1
-
13
-
-
0036305835
-
Structure and activity of a thermostable thymine-DNA glycosylase: Evidence for base twisting to remove mismatched normal DNA bases
-
Mol, C. D., Arvai, A. S., Begley, T. J., Cunningham, R. P. & Tainer, J. A. Structure and activity of a thermostable thymine-DNA glycosylase: evidence for base twisting to remove mismatched normal DNA bases. J. Mol. Biol. 315, 373-384 (2002).
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 373-384
-
-
Mol, C.D.1
Arvai, A.S.2
Begley, T.J.3
Cunningham, R.P.4
Tainer, J.A.5
-
14
-
-
0036730599
-
3-Methyladenine DNA glycosylase i is an unexpected helix-hairpin-helix superfamily member
-
Drohat, A. C., Kwon, K., Krosky, D. J. & Stivers, J. T. 3-Methyladenine DNA glycosylase I is an unexpected helix-hairpin-helix superfamily member. Nature Struct. Biol. 9, 659-664 (2002).
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 659-664
-
-
Drohat, A.C.1
Kwon, K.2
Krosky, D.J.3
Stivers, J.T.4
-
15
-
-
0141754009
-
Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases
-
Eichman, B. F., O'Rourke, E. J., Radicella, J. P. & Ellenberger, T. Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases. EMBO J. 22, 4898-4909 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 4898-4909
-
-
Eichman, B.F.1
O'Rourke, E.J.2
Radicella, J.P.3
Ellenberger, T.4
-
16
-
-
34247555529
-
DNA damage recognition and repair by 3-methyladenine DNA glycosylase i (TAG)
-
Metz, A. H., Hollis, T. & Eichman, B. F. DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG). EMBO J. 26, 2411-2420 (2007).
-
(2007)
EMBO J.
, vol.26
, pp. 2411-2420
-
-
Metz, A.H.1
Hollis, T.2
Eichman, B.F.3
-
17
-
-
33645057457
-
Anew protein superfamily includestwo novel 3-methyladenineDNA glycosylases from Bacillus cereus
-
Alseth, I.et al.Anew protein superfamily includestwo novel 3-methyladenineDNA glycosylases from Bacillus cereus, AlkC and AlkD. Mol. Microbiol. 59, 1602-1609 (2006).
-
(2006)
AlkC and AlkD. Mol. Microbiol.
, vol.59
, pp. 1602-1609
-
-
Alseth, I.1
-
18
-
-
34249862768
-
Structural insight into repairofalkylated DNAbya new superfamily of DNA glycosylases comprising HEAT-like repeats
-
Dalhus, B.et al. Structural insight into repairofalkylated DNAbya new superfamily of DNA glycosylases comprising HEAT-like repeats. Nucleic Acids Res. 35, 2451-2459 (2007).
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2451-2459
-
-
Dalhus, B.1
-
19
-
-
46649086715
-
A new protein architecture for processing alkylation damaged DNA: The crystal structure of DNA glycosylase AlkD
-
Rubinson, E. H., Metz, A. H., O'Quin, J. & Eichman, B. F. A new protein architecture for processing alkylation damaged DNA: the crystal structure of DNA glycosylase AlkD. J. Mol. Biol. 381, 13-23 (2008).
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 13-23
-
-
Rubinson, E.H.1
Metz, A.H.2
O'Quin, J.3
Eichman, B.F.4
-
20
-
-
0029392854
-
HEAT repeatsinthe Huntington's disease protein
-
Andrade, M.A.& Bork, P. HEAT repeatsinthe Huntington's disease protein. Nature Genet. 11, 115-116 (1995).
-
(1995)
Nature Genet.
, vol.11
, pp. 115-116
-
-
Andrade, M.A.1
Bork, P.2
-
21
-
-
0033587167
-
Structure of importin-b bound to the IBB domain of importin-a
-
Cingolani, G., Petosa, C., Weis, K. & Muller, C. W. Structure of importin-b bound to the IBB domain of importin-a. Nature 399, 221-229 (1999).
-
(1999)
Nature
, vol.399
, pp. 221-229
-
-
Cingolani, G.1
Petosa, C.2
Weis, K.3
Muller, C.W.4
-
22
-
-
0033612390
-
Structural view of the ? Ran-Importin b interaction at 2.3A resolution
-
Vetter, I. R., Arndt, A., Kutay, U., Gorlich, D. & Wittinghofer, A. Structural view of the ? Ran-Importin b interaction at 2.3A resolution. Cell 97, 635-646 (1999).
-
(1999)
Cell
, vol.97
, pp. 635-646
-
-
Vetter, I.R.1
Arndt, A.2
Kutay, U.3
Gorlich, D.4
Wittinghofer, A.5
-
23
-
-
77953168644
-
Thermodynamic characterization of DNA with 3-deazaadenine and 3-methyl-3-deazaadenine substitutions
-
Ganguly, M., Wang, R.-W., Marky, L. A. & Gold, B.Thermodynamic characterization of DNA with 3-deazaadenine and 3-methyl-3-deazaadenine substitutions. J.Phys. Chem. B 114, 7656-7661 (2010).
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7656-7661
-
-
Ganguly, M.1
Wang, R.-W.2
Markyl., A.3
Gold, B.4
-
24
-
-
1642411206
-
Dissecting the broad substrate specificity of human 3-methyladenine-DNA glycosylase
-
O'Brien, P. J. & Ellenberger, T. Dissecting the broad substrate specificity of human 3-methyladenine-DNA glycosylase. J. Biol. Chem. 279, 9750-9757 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 9750-9757
-
-
O'Brien, P.J.1
Ellenberger, T.2
-
25
-
-
3042686671
-
The Escherichia coli 3-methyladenine DNA glycosylase AlkA has a remarkably versatile active site
-
O'Brien, P. J. & Ellenberger, T. The Escherichia coli 3-methyladenine DNA glycosylase AlkA has a remarkably versatile active site. J. Biol. Chem. 279, 26876-26884 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 26876-26884
-
-
O'Brien, P.J.1
Ellenberger, T.2
-
26
-
-
0035834751
-
Turning on uracil-DNA glycosylase using a pyrene nucleotide switch
-
Jiang, Y. L., Kwon, K. & Stivers, J. T. Turning on uracil-DNA glycosylase using a pyrene nucleotide switch. J. Biol. Chem. 276, 42347-42354 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 42347-42354
-
-
Jiang, Y.L.1
Kwon, K.2
Stivers, J.T.3
-
27
-
-
0033535375
-
DNA adduct formation from tobacco-specific N-nitrosamines
-
Hecht, S. S. DNA adduct formation from tobacco-specific N-nitrosamines. Mutat. Res. 424, 127-142 (1999).
-
(1999)
Mutat. Res.
, vol.424
, pp. 127-142
-
-
Hecht, S.S.1
-
28
-
-
0032538337
-
Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: Mechanisms for nucleotide flipping and base excision
-
Lau, A.Y., Scharer, O.D., Samson, L., Verdine, G.L.& Ellenberger, T.Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision. Cell 95, 249-258 (1998).
-
(1998)
Cell
, vol.95
, pp. 249-258
-
-
Lau, A.Y.1
Scharer, O.D.2
Samson, L.3
Verdine, G.L.4
Ellenberger, T.5
-
29
-
-
33644511436
-
Structureof aDNA glycosylase searching for lesions
-
Banerjee, A., Santos, W.L.& Verdine, G. L.Structureof aDNA glycosylase searching for lesions. Science 311, 1153-1157 (2006).
-
(2006)
Science
, vol.311
, pp. 1153-1157
-
-
Banerjee, A.1
Santos, W.L.2
Verdine, G.L.3
-
30
-
-
15844379169
-
Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA
-
Banerjee, A., Yang, W., Karplus, M. & Verdine, G. L. Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA. Nature 434, 612-618 (2005).
-
(2005)
Nature
, vol.434
, pp. 612-618
-
-
Banerjee, A.1
Yang, W.2
Karplus, M.3
Verdine, G.L.4
-
31
-
-
60349094184
-
Damage detection and base flipping in direct DNA alkylation repair
-
Yang, C. G., Garcia, K. & He, C. Damage detection and base flipping in direct DNA alkylation repair. ChemBioChem 10, 417-423 (2009).
-
(2009)
Chem Bio Chem
, vol.10
, pp. 417-423
-
-
Yang, C.G.1
Garcia, K.2
He, C.3
-
32
-
-
42549128712
-
Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA
-
Yang, C. G. et al. Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature 452, 961-965 (2008).
-
(2008)
Nature
, vol.452
, pp. 961-965
-
-
Yang, C.G.1
-
33
-
-
0022423486
-
Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G 1 dCT3YT3G (X, y 5 A, C, G, T)
-
Aboul-ela, F., Koh, D., Tinoco, I. Jr & Martin, F. H. Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G 1 dCT3YT3G (X, Y 5 A, C, G, T). Nucleic Acids Res. 13, 4811-4824 (1985).
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 4811-4824
-
-
Aboul-Ela, F.1
Koh, D.2
Tinoco Jr., I.3
Martin, F.H.4
-
34
-
-
0003976684
-
Aberrantly methylated DNA: Site-specific introduction of N-7-methyl-29-deoxyguanosine into the Dickerson/Drew dodecamer
-
Ezaz-Nikpay, K. & Verdine, G. L. Aberrantly methylated DNA: site-specific introduction of N-7-methyl-29-deoxyguanosine into the Dickerson/Drew dodecamer. J. Am. Chem. Soc. 114, 6562-6563 (1992).
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 6562-6563
-
-
Ezaz-Nikpay, K.1
Verdine, G.L.2
-
35
-
-
0028675029
-
The effects of N7-methylguanine on duplex DNA structure
-
Ezaz-Nikpay, K. & Verdine, G. L. The effects of N7-methylguanine on duplex DNA structure. Chem. Biol. 1, 235-240 (1994).
-
(1994)
Chem. Biol.
, vol.1
, pp. 235-240
-
-
Ezaz-Nikpay, K.1
Verdine, G.L.2
-
36
-
-
51349152032
-
Synthesis and structure of duplexDNAcontainingthe genotoxic nucleobase lesionN7-methylguanine
-
Lee, S., Bowman, B.R., Ueno, Y., Wang, S.& Verdine, G.L.Synthesis and structure of duplexDNAcontainingthe genotoxic nucleobase lesionN7- methylguanine.J.Am. Chem. Soc. 130, 11570-11571 (2008).
-
(2008)
J.Am. Chem. Soc.
, vol.130
, pp. 11570-11571
-
-
Lee, S.1
Bowman, B.R.2
Ueno, Y.3
Wang, S.4
Verdine, G.L.5
-
37
-
-
0023664744
-
The structureofguanosine-thymidine mismatchesinB-DNA at 2.5-A resolution
-
Hunter, W.N.et al. The structureofguanosine-thymidine mismatchesinB-DNA at 2.5-A resolution. J. Biol. Chem. 262, 9962-9970 (1987).
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 9962-9970
-
-
Hunter, W.N.1
-
38
-
-
0035909316
-
Uracil-DNA glycosylase acts by substrate autocatalysis
-
Dinner, A. R., Blackburn, G. M. & Karplus, M. Uracil-DNA glycosylase acts by substrate autocatalysis. Nature 413, 752-755 (2001).
-
(2001)
Nature
, vol.413
, pp. 752-755
-
-
Dinner, A.R.1
Blackburn, G.M.2
Karplus, M.3
-
39
-
-
0345270445
-
Powering DNA repair through substrate electrostatic interactions
-
Jiang, Y. L., Ichikawa, Y., Song, F. & Stivers, J. T. Powering DNA repair through substrate electrostatic interactions. Biochemistry 42, 1922-1929 (2003).
-
(2003)
Biochemistry
, vol.42
, pp. 1922-1929
-
-
Jiang, Y.L.1
Ichikawa, Y.2
Song, F.3
Stivers, J.T.4
-
40
-
-
38149049320
-
Repair of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone-induced DNA pyridyloxobutylation by nucleotide excision repair
-
Brown, P. J., Bedard, L. L. & Massey, T. E. Repair of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone-induced DNA pyridyloxobutylation by nucleotide excision repair. Cancer Lett. 260, 48-55 (2008).
-
(2008)
Cancer Lett.
, vol.260
, pp. 48-55
-
-
Brown, P.J.1
Bedard, L.L.2
Massey, T.E.3
-
41
-
-
68949107651
-
The influence of repair pathways on the cytotoxicity and mutagenicity induced by the pyridyloxobutylation pathway of tobacco-specific nitrosamines
-
Li, L. et al. The influence of repair pathways on the cytotoxicity and mutagenicity induced by the pyridyloxobutylation pathway of tobacco-specific nitrosamines. Chem. Res. Toxicol. 22, 1464-1472 (2009).
-
(2009)
Chem. Res. Toxicol.
, vol.22
, pp. 1464-1472
-
-
Li, L.1
-
42
-
-
34948892722
-
Recognition of DNA damage by the Rad4 nucleotide excision repair protein
-
Min, J. H. & Pavletich, N. P. Recognition of DNA damage by the Rad4 nucleotide excision repair protein. Nature 449, 570-575 (2007).
-
(2007)
Nature
, vol.449
, pp. 570-575
-
-
Min, J.H.1
Pavletich, N.P.2
-
43
-
-
0034719372
-
DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination
-
Mol, C. D., Izumi, T., Mitra, S. & Tainer, J. A. DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination. Nature 403, 451-456 (2000).
-
(2000)
Nature
, vol.403
, pp. 451-456
-
-
Mol, C.D.1
Izumi, T.2
Mitra, S.3
Tainer, J.A.4
-
44
-
-
67249113070
-
Flipping of alkylated DNA damage bridges base and nucleotide excision repair
-
Tubbs, J. L. et al. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 459, 808-813 (2009).
-
(2009)
Nature
, vol.459
, pp. 808-813
-
-
Tubbs, J.L.1
-
45
-
-
0033782987
-
HEAT repeats associated with condensins, Cohesins, Andother complexes involvedinchromosome-related functions
-
Neuwald, A. F. & Hirano, T. HEAT repeats associated with condensins, Cohesins, Andother complexes involvedinchromosome-related functions. Genome Res. 10, 1445-1452 (2000).
-
(2000)
Genome Res.
, vol.10
, pp. 1445-1452
-
-
Neuwald, A.F.1
Hirano, T.2
-
46
-
-
0037462453
-
The ATRs ATMs, and TORs are giant HEAT repeat proteins
-
Perry, J. & Kleckner, N.The ATRs, ATMs, And TORs are giant HEAT repeat proteins. Cell 112, 151-155 (2003).
-
(2003)
Cell
, vol.112
, pp. 151-155
-
-
Perry, J.1
Kleckner, N.2
-
47
-
-
40049096125
-
Cryo-EM structure of the DNA-dependent protein kinase catalytic subunit at subnanometer resolution reveals a helices and insight into DNA binding
-
Williams, D. R., Lee, K. J., Shi, J., Chen, D. J. & Stewart, P. L. Cryo-EM structure of the DNA-dependent protein kinase catalytic subunit at subnanometer resolution reveals a helices and insight into DNA binding. Structure 16, 468-477 (2008).
-
(2008)
Structure
, vol.16
, pp. 468-477
-
-
Williams, D.R.1
Lee, K.J.2
Shi, J.3
Chen, D.J.4
Stewart, P.L.5
-
48
-
-
73849140503
-
Crystal structure of DNA-PKcs revealsalargeopen- ringcradle comprised of HEAT repeats
-
Sibanda, B. L., Chirgadze, D. Y. & Blundell, T. L. Crystal structure of DNA-PKcs revealsalargeopen- ringcradle comprised of HEAT repeats. Nature 463, 118-121 (2010).
-
(2010)
Nature
, vol.463
, pp. 118-121
-
-
Sibanda, B.L.1
Chirgadze, D.Y.2
Blundell, T.L.3
-
49
-
-
0036909326
-
The synthesis of anti-fixed 3-methyl-3-deaza-29-deoxyadenosine and other 3H-imidazo[4, 5-c]pyridine analogs
-
Irani, R. J. & SantaLucia, J. Jr. The synthesis of anti-fixed 3-methyl-3-deaza-29-deoxyadenosine and other 3H-imidazo[4, 5-c]pyridine analogs. Nucleosides Nucleotides Nucleic Acids 21, 737-751 (2002).
-
(2002)
Nucleosides Nucleotides Nucleic Acids
, vol.21
, pp. 737-751
-
-
Irani, R.J.1
Santa Lucia Jr., J.2
-
50
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
51
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
McCoy, A. J., Grosse-Kunstleve, R. W., Storoni, L. C. & Read, R. J. Likelihood-enhanced fast translation functions. Acta Crystallogr. D. 61, 458-464 (2005).
-
(2005)
Acta Crystallogr. D.
, vol.61
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
52
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T. et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr.D54, 905-921 (1998).
-
(1998)
Acta Crystallogr.
, vol.D54
, pp. 905-921
-
-
Brünger, A.T.1
-
53
-
-
0032790081
-
XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density
-
McRee, D. E. XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125, 156-165 (1999).
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
55
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132 (2004).
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
56
-
-
0000243829
-
Procheck - A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., Macarthur, M. W., Moss, D. S. & Thornton, J. M. Procheck - a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 283-291 (1993).
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
57
-
-
0024058085
-
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
-
Lavery, R. & Sklenar, H. The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dyn. 6, 63-91 (1988).
-
(1988)
J. Biomol. Struct. Dyn.
, vol.6
, pp. 63-91
-
-
Lavery, R.1
Sklenar, H.2
-
58
-
-
0034728369
-
Substrate specificity of human methylpurine DNA N-glycosylase
-
Asaeda, A. et al. Substrate specificity of human methylpurine DNA N-glycosylase. Biochemistry 39, 1959-1965 (2000).
-
(2000)
Biochemistry
, vol.39
, pp. 1959-1965
-
-
Asaeda, A.1
-
59
-
-
57749170001
-
Akinetic assaytomonitor RNA decapping under single-turnover conditions
-
Jones, B.N., Quang-Dang, D.U., Oku, Y. & Gross, J.D. Akinetic assaytomonitor RNA decapping under single-turnover conditions. Methods Enzymol.448, 23-40 (2008).
-
(2008)
Methods Enzymol
, vol.448
, pp. 23-40
-
-
Jones, B.N.1
Quang-Dang, D.U.2
Oku, Y.3
Gross, J.D.4
-
60
-
-
67649592232
-
Human AP endonuclease 1 stimulates multiple-turnover base excision by alkyladenine DNA glycosylase
-
Baldwin, M. R. & O'Brien, P. J. Human AP endonuclease 1 stimulates multiple-turnover base excision by alkyladenine DNA glycosylase. Biochemistry 48, 6022-6033 (2009).
-
(2009)
Biochemistry
, vol.48
, pp. 6022-6033
-
-
Baldwin, M.R.1
O'Brien, P.J.2
-
61
-
-
71749091666
-
Efficient recognition of an unpaired lesion by a DNA repair glycosylase
-
Lyons, D. M. & O'Brien, P. J. Efficient recognition of an unpaired lesion by a DNA repair glycosylase. J. Am. Chem. Soc. 131, 17742-17743 (2009).
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 17742-17743
-
-
Lyons, D.M.1
O'Brien, P.J.2
-
62
-
-
35648950472
-
Pre-steady-state kinetic characterization of the AP endonuclease activity of human AP endonuclease 1
-
Maher, R. L. & Bloom, L. B. Pre-steady-state kinetic characterization of the AP endonuclease activity of human AP endonuclease 1. J. Biol. Chem. 282, 30577-30585 (2007).
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 30577-30585
-
-
Maher, R.L.1
Bloom, L.B.2
-
63
-
-
33845755964
-
Slow base excision by human alkyladenine DNA glycosylase limits the rate of formation of AP sites and AP endonuclease 1 does not stimulate base excision
-
Maher, R. L., Vallur, A. C., Feller, J. A. & Bloom, L. B. Slow base excision by human alkyladenine DNA glycosylase limits the rate of formation of AP sites and AP endonuclease 1 does not stimulate base excision. DNA Repair (Amst.) 6, 71-81 (2007).
-
(2007)
DNA Repair (Amst.)
, vol.6
, pp. 71-81
-
-
Maher, R.L.1
Vallur, A.C.2
Feller, J.A.3
Bloom, L.B.4
-
64
-
-
73649103725
-
Role of two strictly conserved residues in nucleotide flipping and N-glycosylic bond cleavage by human thymine DNA glycosylase
-
Maiti, A., Morgan, M. T. & Drohat, A. C. Role of two strictly conserved residues in nucleotide flipping and N-glycosylic bond cleavage by human thymine DNA glycosylase. J. Biol. Chem. 284, 36680-36688 (2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 36680-36688
-
-
Maiti, A.1
Morgan, M.T.2
Drohat, A.C.3
-
65
-
-
33749171576
-
Specificity of human thymine DNA glycosylase depends on N-glycosidic bond stability
-
Bennett, M. T. et al. Specificity of human thymine DNA glycosylase depends on N-glycosidic bond stability. J. Am. Chem. Soc. 128, 12510-12519 (2006).
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 12510-12519
-
-
Bennett, M.T.1
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